Wall clock time and date at job start Mon Mar 30 2020 00:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36172 * 120.04850 * 2 1 4 4 C 1.40166 * 120.09689 * 179.97438 * 3 2 1 5 5 C 1.47281 * 119.89942 * 180.02562 * 4 3 2 6 6 C 1.32356 * 118.54258 * 294.97910 * 5 4 3 7 7 C 1.51624 * 120.22347 * 179.16183 * 6 5 4 8 8 H 1.08997 * 112.92462 * 157.98118 * 7 6 5 9 9 C 1.55154 * 105.89696 * 282.21698 * 7 6 5 10 10 C 1.54339 * 104.24496 * 83.31630 * 9 7 6 11 11 C 1.54048 * 105.09002 * 4.08736 * 10 9 7 12 12 H 1.09002 * 111.19408 * 143.30990 * 11 10 9 13 13 C 1.50263 * 118.53715 * 114.71468 * 5 4 3 14 14 N 1.48856 * 106.80615 * 33.14279 * 7 6 5 15 15 C 1.40202 * 120.19540 * 359.97438 * 4 3 2 16 16 C 1.36138 * 120.09494 * 359.97438 * 15 4 3 17 17 C 1.40973 * 120.04971 * 179.97438 * 2 1 3 18 18 C 1.40932 * 120.09369 * 0.03817 * 17 2 1 19 19 H 1.07997 * 120.00112 * 25.64068 * 18 17 2 20 20 C 1.40026 * 119.99541 * 205.63856 * 18 17 2 21 21 N 1.30788 * 120.00679 * 15.42564 * 20 18 17 22 22 Si 1.86805 * 119.99717 * 195.42568 * 20 18 17 23 23 H 1.48503 * 109.46844 * 90.00225 * 22 20 18 24 24 H 1.48495 * 109.47094 * 209.99813 * 22 20 18 25 25 H 1.48498 * 109.47270 * 330.00294 * 22 20 18 26 26 H 1.09003 * 109.47242 * 89.99803 * 1 2 3 27 27 H 1.09004 * 109.46711 * 209.99548 * 1 2 3 28 28 H 1.08990 * 109.47312 * 329.99481 * 1 2 3 29 29 H 1.07998 * 119.95085 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.88596 * 359.14187 * 6 5 4 31 31 H 1.09002 * 110.46929 * 202.00572 * 9 7 6 32 32 H 1.08994 * 110.47293 * 324.49271 * 9 7 6 33 33 H 1.09002 * 110.31930 * 122.98506 * 10 9 7 34 34 H 1.08998 * 110.31912 * 245.08431 * 10 9 7 35 35 H 1.09002 * 109.22609 * 306.70712 * 13 5 4 36 36 H 1.09010 * 109.22728 * 66.06566 * 13 5 4 37 37 H 1.00897 * 111.00173 * 50.65021 * 14 7 6 38 38 H 1.08000 * 119.95159 * 179.97438 * 15 4 3 39 39 H 1.07999 * 120.05042 * 179.72332 * 16 15 4 40 40 H 0.96995 * 120.00210 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.1787 0.0000 4 6 3.5905 1.1799 0.0005 5 6 4.3236 2.4573 0.0011 6 6 4.2129 3.2504 -1.0527 7 6 4.9359 4.5828 -1.0844 8 1 5.0890 4.9588 -2.0959 9 6 4.0970 5.5427 -0.1999 10 6 4.5724 5.2467 1.2383 11 6 5.7146 4.2251 1.0809 12 1 6.5048 4.4019 1.8105 13 6 5.1591 2.8049 1.2007 14 7 6.2075 4.4005 -0.3324 15 6 4.2967 -0.0313 0.0016 16 6 3.6230 -1.2143 0.0027 17 6 2.2129 -1.2202 0.0005 18 6 1.5113 -2.4425 0.0003 19 1 0.5114 -2.4911 -0.4050 20 6 2.1107 -3.5939 0.5255 21 7 3.1748 -3.4916 1.2790 22 14 1.3904 -5.2760 0.1499 23 1 2.0129 -5.8164 -1.0853 24 1 1.6621 -6.1953 1.2841 25 1 -0.0763 -5.1536 -0.0476 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8898 0.5139 29 1 1.6488 2.1140 -0.0004 30 1 3.6059 2.9473 -1.8930 31 1 4.3016 6.5804 -0.4633 32 1 3.0339 5.3261 -0.3044 33 1 4.9417 6.1575 1.7098 34 1 3.7593 4.8201 1.8255 35 1 4.5459 2.7310 2.0988 36 1 5.9898 2.1029 1.2752 37 1 6.7089 3.5890 -0.6611 38 1 5.3767 -0.0258 0.0016 39 1 4.1677 -2.1469 -0.0010 40 1 3.5898 -4.2892 1.6430 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242027001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:45 Heat of formation + Delta-G solvation = 23.002688 kcal Electronic energy + Delta-G solvation = -20152.071293 eV Core-core repulsion = 17316.362526 eV Total energy + Delta-G solvation = -2835.708767 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.03337 -37.77727 -34.20543 -32.72767 -31.04411 -30.95962 -30.10967 -28.87304 -26.22195 -24.86017 -24.16105 -22.21989 -20.64357 -20.04595 -19.52918 -17.79340 -17.23120 -16.20904 -15.36457 -14.66309 -14.42698 -14.14724 -13.81093 -13.62301 -13.10373 -12.75038 -12.57293 -12.51443 -12.27860 -11.96405 -11.81616 -11.62100 -11.40193 -11.21207 -11.19307 -10.97761 -10.89323 -10.69741 -10.51709 -10.37411 -10.17804 -9.59843 -9.44870 -9.28028 -8.48349 -8.12850 -7.42479 -7.20099 -6.82169 -4.39782 2.42347 2.82595 3.01858 3.05182 3.06211 3.19930 3.86145 4.38073 4.52896 4.80083 4.90876 5.13137 5.31557 5.40012 5.49289 5.59961 5.65645 5.82855 5.91660 5.99450 6.10512 6.14042 6.16748 6.20819 6.24778 6.30578 6.38817 6.40450 6.63938 6.69522 6.79963 6.92694 6.99560 7.13033 7.19832 7.34688 7.42589 7.52170 7.62686 7.89692 8.02074 8.07271 8.24725 8.56890 8.82057 8.93183 10.09634 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035859 B = 0.004424 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.659191 B = 6327.771096 C = 6717.794940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.202 4.202 3 C -0.067 4.067 4 C -0.201 4.201 5 C -0.022 4.022 6 C -0.225 4.225 7 C 0.097 3.903 8 H 0.098 0.902 9 C -0.111 4.111 10 C -0.117 4.117 11 C 0.063 3.937 12 H 0.090 0.910 13 C -0.109 4.109 14 N -0.658 5.658 15 C -0.086 4.086 16 C -0.166 4.166 17 C 0.118 3.882 18 C -0.453 4.453 19 H 0.081 0.919 20 C 0.074 3.926 21 N -0.789 5.789 22 Si 0.909 3.091 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.261 1.261 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.339 0.661 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 9.558 -0.752 9.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.203 4.203 3 C -0.085 4.085 4 C -0.202 4.202 5 C -0.023 4.023 6 C -0.245 4.245 7 C -0.012 4.012 8 H 0.116 0.884 9 C -0.149 4.149 10 C -0.155 4.155 11 C -0.047 4.047 12 H 0.108 0.892 13 C -0.147 4.147 14 N -0.286 5.286 15 C -0.104 4.104 16 C -0.185 4.185 17 C 0.115 3.885 18 C -0.482 4.482 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.413 5.413 22 Si 0.733 3.267 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.185 1.185 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.154 0.846 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.743 10.121 -0.554 10.501 hybrid contribution -0.688 -1.937 -0.062 2.056 sum 2.055 8.185 -0.617 8.461 Atomic orbital electron populations 1.20400 0.93615 1.00503 0.99590 1.19414 0.94354 0.93121 1.13428 1.20165 0.92492 0.95784 1.00055 1.18177 0.92494 0.91025 1.18553 1.19837 0.95249 0.93980 0.93219 1.23618 1.04972 0.96748 0.99112 1.21977 0.88617 0.93137 0.97502 0.88411 1.22437 0.99416 0.98623 0.94456 1.22229 0.97490 0.98539 0.97241 1.22894 0.96360 0.93761 0.91655 0.89157 1.21108 0.99255 0.96363 0.97975 1.64569 1.18309 1.43393 1.02326 1.20414 0.96876 0.92449 1.00675 1.20989 0.94562 0.96581 1.06354 1.17536 0.91824 0.91632 0.87489 1.19608 1.01754 0.92508 1.34321 0.90093 1.25975 0.94264 1.01503 0.92670 1.69805 1.17636 1.31686 1.22210 0.86298 0.80540 0.80872 0.78982 1.19218 1.20241 1.18519 0.94113 0.92085 0.94452 0.89650 0.87512 0.91783 0.91231 0.91622 0.91262 0.90460 0.91102 0.84559 0.89817 0.86393 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 9.39 36.00 0.34 -1.41 16 2 C -0.20 -4.84 5.90 -104.33 -0.62 -5.46 16 3 C -0.07 -1.50 9.24 -39.60 -0.37 -1.87 16 4 C -0.20 -4.40 5.20 -104.76 -0.55 -4.94 16 5 C -0.02 -0.40 5.04 -103.08 -0.52 -0.92 16 6 C -0.23 -3.71 8.45 -35.78 -0.30 -4.01 16 7 C 0.10 1.34 4.72 -66.18 -0.31 1.03 16 8 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 9 C -0.11 -1.40 6.41 -24.89 -0.16 -1.56 16 10 C -0.12 -1.46 6.37 -25.48 -0.16 -1.63 16 11 C 0.06 0.84 4.37 -65.04 -0.28 0.55 16 12 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 13 C -0.11 -1.71 5.10 -28.12 -0.14 -1.85 16 14 N -0.66 -8.97 7.53 -94.62 -0.71 -9.68 16 15 C -0.09 -2.00 9.67 -39.60 -0.38 -2.38 16 16 C -0.17 -4.26 8.61 -39.29 -0.34 -4.60 16 17 C 0.12 3.08 5.57 -106.79 -0.60 2.48 16 18 C -0.45 -11.66 8.11 -37.89 -0.31 -11.97 16 19 H 0.08 2.00 6.84 -52.49 -0.36 1.64 16 20 C 0.07 1.82 5.18 -17.33 -0.09 1.73 16 21 N -0.79 -19.96 10.87 55.55 0.60 -19.36 16 22 Si 0.91 18.25 29.59 -169.99 -5.03 13.23 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.29 6.76 -51.93 -0.35 0.94 16 28 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.11 1.87 8.02 -52.49 -0.42 1.44 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.90 7.86 -51.93 -0.41 0.49 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.90 7.71 -51.93 -0.40 0.50 16 35 H 0.08 1.25 7.93 -51.93 -0.41 0.84 16 36 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 37 H 0.34 4.63 8.38 -39.29 -0.33 4.31 16 38 H 0.08 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.12 3.14 6.14 -52.49 -0.32 2.81 16 40 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 LS Contribution 317.60 15.07 4.79 4.79 Total: -1.00 -26.29 317.60 -11.08 -37.36 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -5.94 Total: 10.48 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: -4.78 Total: -36.81 kcal Atomic # 7 Polarization: -28.93 SS G_CDS: -0.11 Total: -29.04 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.29 -11.08 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242027001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.367 kcal (2) G-P(sol) polarization free energy of solvation -26.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds