Wall clock time and date at job start Mon Mar 30 2020 00:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36172 * 120.04850 * 2 1 4 4 C 1.40166 * 120.09689 * 179.97438 * 3 2 1 5 5 C 1.47281 * 119.89942 * 180.02562 * 4 3 2 6 6 C 1.32356 * 118.54258 * 294.97910 * 5 4 3 7 7 C 1.51624 * 120.22347 * 179.16183 * 6 5 4 8 8 H 1.08997 * 112.92462 * 157.98118 * 7 6 5 9 9 C 1.55154 * 105.89696 * 282.21698 * 7 6 5 10 10 C 1.54339 * 104.24496 * 83.31630 * 9 7 6 11 11 C 1.54048 * 105.09002 * 4.08736 * 10 9 7 12 12 H 1.09002 * 111.19408 * 143.30990 * 11 10 9 13 13 C 1.50263 * 118.53715 * 114.71468 * 5 4 3 14 14 N 1.48856 * 106.80615 * 33.14279 * 7 6 5 15 15 C 1.40202 * 120.19540 * 359.97438 * 4 3 2 16 16 C 1.36138 * 120.09494 * 359.97438 * 15 4 3 17 17 C 1.40973 * 120.04971 * 179.97438 * 2 1 3 18 18 C 1.40932 * 120.09369 * 0.03817 * 17 2 1 19 19 H 1.07997 * 120.00112 * 25.64068 * 18 17 2 20 20 C 1.40026 * 119.99541 * 205.63856 * 18 17 2 21 21 N 1.30788 * 120.00679 * 15.42564 * 20 18 17 22 22 Si 1.86805 * 119.99717 * 195.42568 * 20 18 17 23 23 H 1.48503 * 109.46844 * 90.00225 * 22 20 18 24 24 H 1.48495 * 109.47094 * 209.99813 * 22 20 18 25 25 H 1.48498 * 109.47270 * 330.00294 * 22 20 18 26 26 H 1.09003 * 109.47242 * 89.99803 * 1 2 3 27 27 H 1.09004 * 109.46711 * 209.99548 * 1 2 3 28 28 H 1.08990 * 109.47312 * 329.99481 * 1 2 3 29 29 H 1.07998 * 119.95085 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.88596 * 359.14187 * 6 5 4 31 31 H 1.09002 * 110.46929 * 202.00572 * 9 7 6 32 32 H 1.08994 * 110.47293 * 324.49271 * 9 7 6 33 33 H 1.09002 * 110.31930 * 122.98506 * 10 9 7 34 34 H 1.08998 * 110.31912 * 245.08431 * 10 9 7 35 35 H 1.09002 * 109.22609 * 306.70712 * 13 5 4 36 36 H 1.09010 * 109.22728 * 66.06566 * 13 5 4 37 37 H 1.00897 * 111.00173 * 50.65021 * 14 7 6 38 38 H 1.08000 * 119.95159 * 179.97438 * 15 4 3 39 39 H 1.07999 * 120.05042 * 179.72332 * 16 15 4 40 40 H 0.96995 * 120.00210 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.1787 0.0000 4 6 3.5905 1.1799 0.0005 5 6 4.3236 2.4573 0.0011 6 6 4.2129 3.2504 -1.0527 7 6 4.9359 4.5828 -1.0844 8 1 5.0890 4.9588 -2.0959 9 6 4.0970 5.5427 -0.1999 10 6 4.5724 5.2467 1.2383 11 6 5.7146 4.2251 1.0809 12 1 6.5048 4.4019 1.8105 13 6 5.1591 2.8049 1.2007 14 7 6.2075 4.4005 -0.3324 15 6 4.2967 -0.0313 0.0016 16 6 3.6230 -1.2143 0.0027 17 6 2.2129 -1.2202 0.0005 18 6 1.5113 -2.4425 0.0003 19 1 0.5114 -2.4911 -0.4050 20 6 2.1107 -3.5939 0.5255 21 7 3.1748 -3.4916 1.2790 22 14 1.3904 -5.2760 0.1499 23 1 2.0129 -5.8164 -1.0853 24 1 1.6621 -6.1953 1.2841 25 1 -0.0763 -5.1536 -0.0476 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8898 0.5139 29 1 1.6488 2.1140 -0.0004 30 1 3.6059 2.9473 -1.8930 31 1 4.3016 6.5804 -0.4633 32 1 3.0339 5.3261 -0.3044 33 1 4.9417 6.1575 1.7098 34 1 3.7593 4.8201 1.8255 35 1 4.5459 2.7310 2.0988 36 1 5.9898 2.1029 1.2752 37 1 6.7089 3.5890 -0.6611 38 1 5.3767 -0.0258 0.0016 39 1 4.1677 -2.1469 -0.0010 40 1 3.5898 -4.2892 1.6430 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242027001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:44 Heat of formation + Delta-G solvation = 10.155550 kcal Electronic energy + Delta-G solvation = -20152.628387 eV Core-core repulsion = 17316.362526 eV Total energy + Delta-G solvation = -2836.265861 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.23525 -39.54178 -35.92788 -34.34910 -32.72484 -32.15168 -31.25651 -30.52333 -27.97787 -26.59445 -25.35947 -23.72085 -22.29753 -21.26377 -21.02477 -19.23906 -18.89134 -17.57943 -17.08858 -15.93516 -15.81909 -15.74787 -15.38182 -15.02121 -14.66422 -14.38586 -14.10078 -13.72382 -13.64166 -13.58687 -13.16260 -13.03618 -13.01593 -12.85754 -12.68411 -12.47737 -12.15517 -12.07975 -12.00947 -11.56742 -11.50056 -11.36545 -11.25397 -11.07255 -9.79899 -9.43490 -9.28883 -9.00443 -8.64170 -6.31357 0.77240 1.15734 1.29955 1.36765 1.49289 1.56370 2.18033 2.70388 3.29144 3.65133 3.74771 3.87802 4.00700 4.13755 4.21211 4.34952 4.43111 4.44196 4.54695 4.69291 4.71229 4.78937 4.83315 4.87577 4.98982 5.02169 5.06900 5.11152 5.13201 5.18840 5.27603 5.29898 5.36553 5.47556 5.65080 5.74944 5.76113 5.99312 6.10668 6.16212 6.23437 6.35626 6.38994 6.68095 6.92550 7.04843 8.30269 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035859 B = 0.004424 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.659191 B = 6327.771096 C = 6717.794940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.215 4.215 3 C -0.078 4.078 4 C -0.189 4.189 5 C -0.048 4.048 6 C -0.202 4.202 7 C 0.099 3.901 8 H 0.115 0.885 9 C -0.109 4.109 10 C -0.118 4.118 11 C 0.067 3.933 12 H 0.108 0.892 13 C -0.103 4.103 14 N -0.654 5.654 15 C -0.097 4.097 16 C -0.189 4.189 17 C 0.083 3.917 18 C -0.485 4.485 19 H 0.081 0.919 20 C 0.033 3.967 21 N -0.824 5.824 22 Si 0.981 3.019 23 H -0.264 1.264 24 H -0.269 1.269 25 H -0.256 1.256 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.338 0.662 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.320 11.473 -1.022 11.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.216 4.216 3 C -0.096 4.096 4 C -0.190 4.190 5 C -0.049 4.049 6 C -0.222 4.222 7 C -0.011 4.011 8 H 0.133 0.867 9 C -0.147 4.147 10 C -0.156 4.156 11 C -0.042 4.042 12 H 0.126 0.874 13 C -0.141 4.141 14 N -0.282 5.282 15 C -0.116 4.116 16 C -0.209 4.209 17 C 0.081 3.919 18 C -0.514 4.514 19 H 0.099 0.901 20 C -0.182 4.182 21 N -0.450 5.450 22 Si 0.802 3.198 23 H -0.189 1.189 24 H -0.193 1.193 25 H -0.179 1.179 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.154 0.846 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.729 12.056 -0.825 12.389 hybrid contribution -0.629 -2.367 -0.025 2.449 sum 2.100 9.690 -0.850 9.951 Atomic orbital electron populations 1.20378 0.91546 1.01090 1.00566 1.19867 0.96215 0.92954 1.12590 1.20463 0.93047 0.96155 0.99983 1.18597 0.92757 0.92281 1.15339 1.19795 0.96938 0.92904 0.95228 1.23827 1.03267 0.97506 0.97602 1.22134 0.88517 0.91571 0.98892 0.86688 1.22448 0.98863 0.99368 0.94065 1.22265 0.96935 0.99026 0.97325 1.22950 0.97126 0.92168 0.91965 0.87415 1.21058 0.98501 0.98159 0.96387 1.64613 1.17920 1.43246 1.02388 1.20614 0.97604 0.92557 1.00779 1.20967 0.94926 0.96716 1.08270 1.17898 0.92264 0.92926 0.88861 1.19812 1.02199 0.93495 1.35897 0.90054 1.26809 0.94495 1.04986 0.91890 1.69868 1.19000 1.32962 1.23157 0.85216 0.79814 0.75936 0.78871 1.18853 1.19339 1.17926 0.92826 0.93068 0.92202 0.87636 0.88669 0.89717 0.91678 0.89581 0.91963 0.91365 0.91671 0.84614 0.88670 0.88292 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.25 9.39 71.24 0.67 -2.58 16 2 C -0.21 -10.45 5.90 -19.68 -0.12 -10.57 16 3 C -0.08 -3.52 9.24 22.26 0.21 -3.31 16 4 C -0.19 -8.27 5.20 -19.95 -0.10 -8.37 16 5 C -0.05 -1.68 5.04 -18.71 -0.09 -1.77 16 6 C -0.20 -6.29 8.45 24.89 0.21 -6.08 16 7 C 0.10 2.40 4.72 44.82 0.21 2.61 16 8 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 9 C -0.11 -2.37 6.41 31.79 0.20 -2.17 16 10 C -0.12 -2.56 6.37 31.40 0.20 -2.36 16 11 C 0.07 1.61 4.37 44.51 0.19 1.80 16 12 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 13 C -0.10 -3.10 5.10 29.70 0.15 -2.95 16 14 N -0.65 -15.86 7.53 -453.26 -3.41 -19.27 16 15 C -0.10 -4.67 9.67 22.26 0.22 -4.46 16 16 C -0.19 -10.21 8.61 22.46 0.19 -10.01 16 17 C 0.08 4.49 5.57 -21.27 -0.12 4.37 16 18 C -0.49 -25.86 8.11 23.36 0.19 -25.67 16 19 H 0.08 4.15 6.84 -2.91 -0.02 4.13 16 20 C 0.03 1.67 5.18 85.28 0.44 2.11 16 21 N -0.82 -43.35 10.87 21.84 0.24 -43.12 16 22 Si 0.98 38.07 29.59 68.60 2.03 40.10 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 25 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 2.18 6.76 -2.38 -0.02 2.16 16 28 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 29 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.10 3.18 8.02 -2.91 -0.02 3.16 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.48 7.86 -2.39 -0.02 1.46 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.46 7.71 -2.39 -0.02 1.44 16 35 H 0.07 2.16 7.93 -2.39 -0.02 2.14 16 36 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.34 8.43 8.38 -89.70 -0.75 7.68 16 38 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 39 H 0.10 5.60 6.14 -2.91 -0.02 5.58 16 40 H 0.29 13.69 8.29 -92.71 -0.77 12.92 16 Total: -1.00 -57.99 317.60 1.79 -56.20 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: 0.28 Total: 35.50 kcal Atomic # 6 Polarization: -72.06 SS G_CDS: 2.65 Total: -69.40 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -3.17 Total: -62.39 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -57.99 1.79 -56.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242027001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.351 kcal (2) G-P(sol) polarization free energy of solvation -57.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds