Wall clock time and date at job start Mon Mar 30 2020 01:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47179 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99899 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46795 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47215 * 65.00306 * 12 11 10 14 14 C 1.46843 * 110.99886 * 66.04437 * 13 12 11 15 15 C 1.53038 * 109.50196 * 174.12316 * 14 13 12 16 16 C 1.53101 * 109.29052 * 59.20558 * 15 14 13 17 17 H 1.08995 * 109.53419 * 182.46377 * 16 15 14 18 18 O 1.42876 * 109.40274 * 62.17753 * 16 15 14 19 19 C 1.42883 * 114.16131 * 179.38890 * 18 16 15 20 20 C 1.53098 * 109.41193 * 61.14745 * 19 18 16 21 21 C 1.53182 * 109.12643 * 302.33206 * 20 19 18 22 22 C 1.53130 * 109.20138 * 302.40984 * 16 15 14 23 23 H 1.09002 * 109.55487 * 297.14450 * 22 16 15 24 24 C 1.46834 * 110.99609 * 301.82914 * 13 12 11 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.08995 * 109.47179 * 299.99629 * 11 10 9 29 29 H 1.09002 * 109.47160 * 60.00474 * 11 10 9 30 30 H 1.09000 * 109.47075 * 184.99889 * 12 11 10 31 31 H 1.08993 * 109.47766 * 304.99947 * 12 11 10 32 32 H 1.09001 * 109.46609 * 294.13057 * 14 13 12 33 33 H 1.09002 * 109.47060 * 54.11766 * 14 13 12 34 34 H 1.08994 * 109.50381 * 179.15192 * 15 14 13 35 35 H 1.09000 * 109.50085 * 299.26697 * 15 14 13 36 36 H 1.09001 * 109.48598 * 301.16575 * 19 18 16 37 37 H 1.09005 * 109.49094 * 181.13703 * 19 18 16 38 38 H 1.08997 * 109.53226 * 182.43557 * 20 19 18 39 39 H 1.09004 * 109.52630 * 62.22141 * 20 19 18 40 40 H 1.08998 * 109.53629 * 297.14189 * 21 20 19 41 41 H 1.08999 * 109.53544 * 176.89829 * 21 20 19 42 42 H 1.09005 * 109.45871 * 305.84057 * 24 13 12 43 43 H 1.09001 * 109.45787 * 65.78292 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 7 3.4081 -5.8885 1.2536 14 6 2.5623 -6.2420 2.4007 15 6 3.4189 -6.3034 3.6674 16 6 4.0795 -4.9416 3.8977 17 1 4.7250 -4.9933 4.7744 18 8 3.0690 -3.9522 4.1011 19 6 3.5768 -2.6383 4.3406 20 6 4.3882 -2.1773 3.1269 21 6 5.5177 -3.1792 2.8684 22 6 4.9143 -4.5724 2.6682 23 1 5.7144 -5.3012 2.5383 24 6 4.0155 -4.5633 1.4300 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 0.9447 -4.9827 0.8886 29 1 0.9452 -4.9822 -0.8914 30 1 2.1820 -6.9374 -0.0917 31 1 3.3215 -5.7953 -0.8434 32 1 1.7844 -5.4885 2.5244 33 1 2.1016 -7.2144 2.2264 34 1 2.7885 -6.5510 4.5213 35 1 4.1888 -7.0659 3.5494 36 1 4.2173 -2.6511 5.2224 37 1 2.7462 -1.9517 4.5047 38 1 4.8124 -1.1930 3.3247 39 1 3.7391 -2.1265 2.2527 40 1 6.1943 -3.1942 3.7229 41 1 6.0661 -2.8872 1.9728 42 1 4.6109 -4.3168 0.5509 43 1 3.2303 -3.8180 1.5569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261237584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:15 Heat of formation + Delta-G solvation = -98.937955 kcal Electronic energy + Delta-G solvation = -22956.388237 eV Core-core repulsion = 19808.082807 eV Total energy + Delta-G solvation = -3148.305430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.15374 -37.65419 -35.84196 -33.69435 -32.91308 -32.28060 -29.60531 -28.56266 -26.83063 -25.09075 -23.78811 -22.96953 -22.20718 -21.69025 -20.25609 -18.44911 -16.46216 -16.07739 -15.72393 -15.59653 -15.39858 -15.20587 -14.72558 -14.32788 -14.07500 -13.58499 -13.43563 -13.01008 -12.60429 -12.50866 -12.25358 -12.05615 -11.68956 -11.54496 -11.47317 -11.09949 -10.94551 -10.87900 -10.82955 -10.58849 -10.47531 -10.30802 -10.10184 -10.01730 -9.72458 -9.12038 -9.00748 -8.79582 -8.19457 -7.59899 -6.11790 -4.13464 3.28842 3.32682 3.35441 4.05896 4.29681 4.37796 4.86268 4.92423 5.07310 5.16539 5.22692 5.25112 5.37736 5.45920 5.50404 5.63386 5.68343 5.75715 5.78456 5.87279 5.91963 5.97420 6.01808 6.07820 6.14342 6.15618 6.16694 6.27684 6.36050 6.46111 6.51443 6.60935 6.77140 7.08729 7.15185 7.43377 7.52142 7.56922 7.58979 7.76958 8.14466 8.55526 8.98722 9.51042 10.99696 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.007341 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.853225 B = 3813.414093 C = 4669.071219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.065 0.935 9 C 0.194 3.806 10 O -0.385 6.385 11 C 0.024 3.976 12 C 0.060 3.940 13 N -0.537 5.537 14 C 0.053 3.947 15 C -0.104 4.104 16 C 0.094 3.906 17 H 0.049 0.951 18 O -0.373 6.373 19 C 0.068 3.932 20 C -0.166 4.166 21 C -0.112 4.112 22 C -0.115 4.115 23 H 0.074 0.926 24 C 0.055 3.945 25 H 0.264 0.736 26 H 0.003 0.997 27 H 0.001 0.999 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.839 -10.528 7.071 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.730 3.270 4 H -0.212 1.212 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.120 3.880 10 O -0.305 6.305 11 C -0.055 4.055 12 C -0.068 4.068 13 N -0.261 5.261 14 C -0.075 4.075 15 C -0.142 4.142 16 C 0.036 3.964 17 H 0.067 0.933 18 O -0.292 6.292 19 C -0.009 4.009 20 C -0.203 4.203 21 C -0.150 4.150 22 C -0.134 4.134 23 H 0.092 0.908 24 C -0.072 4.072 25 H 0.074 0.926 26 H 0.021 0.979 27 H 0.019 0.981 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.061 -10.763 7.037 15.177 hybrid contribution -0.348 1.618 -0.011 1.655 sum 7.713 -9.145 7.026 13.874 Atomic orbital electron populations 1.69955 1.06091 1.27170 1.50412 1.24924 0.94895 0.99270 0.95232 0.86481 0.79406 0.82283 0.78837 1.21197 1.19966 1.20070 1.20947 0.93763 0.89246 1.50861 0.91705 1.20169 0.88897 0.83800 0.95174 1.87951 1.34977 1.12941 1.94610 1.22994 0.96290 0.86844 0.99360 1.22226 0.94868 0.96725 0.93001 1.62192 1.32338 1.29875 1.01649 1.21998 0.95053 1.00125 0.90342 1.21563 0.99861 0.95104 0.97679 1.22038 0.89715 0.88860 0.95802 0.93280 1.87927 1.32343 1.16975 1.91991 1.22486 0.98404 0.84221 0.95762 1.22305 0.98538 0.98318 1.01177 1.21532 0.97474 0.94644 1.01324 1.21785 0.98232 0.97043 0.96304 0.90765 1.22434 0.98735 0.90312 0.95717 0.92647 0.97903 0.98083 0.94395 0.94440 0.90438 0.90320 0.93452 0.91649 0.91274 0.90354 0.94324 0.89010 0.91537 0.88218 0.92689 0.91493 0.91486 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -14.51 9.43 -34.44 -0.32 -14.83 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.19 5.24 5.69 36.00 0.20 5.44 16 10 O -0.38 -8.94 6.77 -35.23 -0.24 -9.17 16 11 C 0.02 0.46 5.75 37.16 0.21 0.67 16 12 C 0.06 0.94 5.93 -3.82 -0.02 0.92 16 13 N -0.54 -8.52 4.86 -234.70 -1.14 -9.66 16 14 C 0.05 0.78 4.92 -3.84 -0.02 0.76 16 15 C -0.10 -1.36 5.82 -26.66 -0.16 -1.52 16 16 C 0.09 1.35 2.88 -26.61 -0.08 1.27 16 17 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 18 O -0.37 -6.35 9.24 -35.23 -0.33 -6.68 16 19 C 0.07 1.06 6.84 37.21 0.25 1.31 16 20 C -0.17 -2.72 5.77 -26.59 -0.15 -2.87 16 21 C -0.11 -1.61 5.52 -26.56 -0.15 -1.75 16 22 C -0.11 -1.70 2.67 -90.48 -0.24 -1.94 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 24 C 0.05 0.96 3.11 -3.86 -0.01 0.95 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.00 0.09 8.14 -51.92 -0.42 -0.33 16 27 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 28 H 0.04 0.73 6.46 -51.93 -0.34 0.40 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.83 6.26 -51.93 -0.33 0.51 16 33 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.10 2.04 6.57 -51.93 -0.34 1.70 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 43 H 0.10 2.03 3.50 -51.93 -0.18 1.85 16 LS Contribution 323.82 15.07 4.88 4.88 Total: -1.00 -29.95 323.82 -9.17 -39.12 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.48 Total: 0.97 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -0.58 Total: -10.03 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.40 Total: -35.59 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.56 Total: -15.85 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.95 -9.17 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261237584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.816 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds