Wall clock time and date at job start Mon Mar 30 2020 01:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47179 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99899 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46795 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47215 * 65.00306 * 12 11 10 14 14 C 1.46843 * 110.99886 * 66.04437 * 13 12 11 15 15 C 1.53038 * 109.50196 * 174.12316 * 14 13 12 16 16 C 1.53101 * 109.29052 * 59.20558 * 15 14 13 17 17 H 1.08995 * 109.53419 * 182.46377 * 16 15 14 18 18 O 1.42876 * 109.40274 * 62.17753 * 16 15 14 19 19 C 1.42883 * 114.16131 * 179.38890 * 18 16 15 20 20 C 1.53098 * 109.41193 * 61.14745 * 19 18 16 21 21 C 1.53182 * 109.12643 * 302.33206 * 20 19 18 22 22 C 1.53130 * 109.20138 * 302.40984 * 16 15 14 23 23 H 1.09002 * 109.55487 * 297.14450 * 22 16 15 24 24 C 1.46834 * 110.99609 * 301.82914 * 13 12 11 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.08995 * 109.47179 * 299.99629 * 11 10 9 29 29 H 1.09002 * 109.47160 * 60.00474 * 11 10 9 30 30 H 1.09000 * 109.47075 * 184.99889 * 12 11 10 31 31 H 1.08993 * 109.47766 * 304.99947 * 12 11 10 32 32 H 1.09001 * 109.46609 * 294.13057 * 14 13 12 33 33 H 1.09002 * 109.47060 * 54.11766 * 14 13 12 34 34 H 1.08994 * 109.50381 * 179.15192 * 15 14 13 35 35 H 1.09000 * 109.50085 * 299.26697 * 15 14 13 36 36 H 1.09001 * 109.48598 * 301.16575 * 19 18 16 37 37 H 1.09005 * 109.49094 * 181.13703 * 19 18 16 38 38 H 1.08997 * 109.53226 * 182.43557 * 20 19 18 39 39 H 1.09004 * 109.52630 * 62.22141 * 20 19 18 40 40 H 1.08998 * 109.53629 * 297.14189 * 21 20 19 41 41 H 1.08999 * 109.53544 * 176.89829 * 21 20 19 42 42 H 1.09005 * 109.45871 * 305.84057 * 24 13 12 43 43 H 1.09001 * 109.45787 * 65.78292 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 7 3.4081 -5.8885 1.2536 14 6 2.5623 -6.2420 2.4007 15 6 3.4189 -6.3034 3.6674 16 6 4.0795 -4.9416 3.8977 17 1 4.7250 -4.9933 4.7744 18 8 3.0690 -3.9522 4.1011 19 6 3.5768 -2.6383 4.3406 20 6 4.3882 -2.1773 3.1269 21 6 5.5177 -3.1792 2.8684 22 6 4.9143 -4.5724 2.6682 23 1 5.7144 -5.3012 2.5383 24 6 4.0155 -4.5633 1.4300 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 0.9447 -4.9827 0.8886 29 1 0.9452 -4.9822 -0.8914 30 1 2.1820 -6.9374 -0.0917 31 1 3.3215 -5.7953 -0.8434 32 1 1.7844 -5.4885 2.5244 33 1 2.1016 -7.2144 2.2264 34 1 2.7885 -6.5510 4.5213 35 1 4.1888 -7.0659 3.5494 36 1 4.2173 -2.6511 5.2224 37 1 2.7462 -1.9517 4.5047 38 1 4.8124 -1.1930 3.3247 39 1 3.7391 -2.1265 2.2527 40 1 6.1943 -3.1942 3.7229 41 1 6.0661 -2.8872 1.9728 42 1 4.6109 -4.3168 0.5509 43 1 3.2303 -3.8180 1.5569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261237584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:14 Heat of formation + Delta-G solvation = -119.066276 kcal Electronic energy + Delta-G solvation = -22957.261067 eV Core-core repulsion = 19808.082807 eV Total energy + Delta-G solvation = -3149.178259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.38881 -39.18872 -37.44459 -35.01470 -34.84640 -33.70373 -30.84202 -30.21942 -28.76368 -26.32256 -25.21234 -24.54698 -24.01402 -22.94484 -21.54105 -19.69747 -18.62054 -17.53056 -17.44369 -16.95730 -16.71580 -16.53377 -16.34036 -15.88315 -15.59319 -15.22986 -14.66815 -14.53752 -14.13098 -13.77449 -13.74645 -13.33756 -13.21178 -13.07943 -12.91504 -12.83306 -12.70563 -12.48692 -12.25401 -12.11387 -11.99080 -11.71964 -11.53852 -11.29546 -11.24012 -10.96022 -10.79470 -10.22826 -10.17410 -9.02338 -8.32652 -6.44117 1.35992 1.40365 1.48545 2.31413 2.89273 3.01215 3.02386 3.28342 3.77232 3.88907 3.96354 4.07905 4.15404 4.16374 4.24749 4.31831 4.38929 4.47857 4.56382 4.60114 4.65930 4.70653 4.76400 4.82163 4.88632 4.91350 4.95425 5.00308 5.04020 5.13605 5.16418 5.18582 5.31923 5.34350 5.41392 5.53762 5.68991 5.95163 6.19616 6.25028 6.43108 6.51426 6.79085 7.26857 8.79783 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.007341 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.853225 B = 3813.414093 C = 4669.071219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.008 3.992 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.262 1.262 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.213 3.787 10 O -0.387 6.387 11 C 0.017 3.983 12 C 0.066 3.934 13 N -0.528 5.528 14 C 0.052 3.948 15 C -0.101 4.101 16 C 0.087 3.913 17 H 0.076 0.924 18 O -0.400 6.400 19 C 0.067 3.933 20 C -0.164 4.164 21 C -0.108 4.108 22 C -0.111 4.111 23 H 0.094 0.906 24 C 0.060 3.940 25 H 0.269 0.731 26 H -0.027 1.027 27 H -0.023 1.023 28 H 0.030 0.970 29 H 0.042 0.958 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.010 0.990 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.001 -11.471 8.203 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.191 4.191 3 Si 0.797 3.203 4 H -0.202 1.202 5 H -0.187 1.187 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.081 0.919 9 C 0.138 3.862 10 O -0.307 6.307 11 C -0.061 4.061 12 C -0.062 4.062 13 N -0.251 5.251 14 C -0.076 4.076 15 C -0.138 4.138 16 C 0.030 3.970 17 H 0.094 0.906 18 O -0.320 6.320 19 C -0.009 4.009 20 C -0.202 4.202 21 C -0.146 4.146 22 C -0.130 4.130 23 H 0.112 0.888 24 C -0.067 4.067 25 H 0.078 0.922 26 H -0.010 1.010 27 H -0.005 1.005 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.132 0.868 31 H 0.097 0.903 32 H 0.029 0.971 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.230 -11.734 8.169 17.580 hybrid contribution -1.078 1.821 -0.376 2.149 sum 9.152 -9.913 7.793 15.581 Atomic orbital electron populations 1.70080 1.07838 1.28501 1.50794 1.25910 0.95815 1.03215 0.94133 0.85357 0.78244 0.77126 0.79524 1.20228 1.18653 1.19043 1.21201 0.93775 0.90294 1.51606 0.91948 1.19710 0.88688 0.85318 0.92456 1.87980 1.34286 1.13854 1.94564 1.23305 0.97834 0.85843 0.99145 1.22332 0.93846 0.96832 0.93220 1.62275 1.32281 1.28464 1.02108 1.22080 0.94514 1.00034 0.90956 1.21619 1.00345 0.94977 0.96885 1.22290 0.89629 0.88731 0.96355 0.90644 1.87905 1.34129 1.17786 1.92189 1.22503 0.98243 0.83718 0.96444 1.22220 0.98627 0.99795 0.99522 1.21535 0.96913 0.93702 1.02410 1.21783 0.98193 0.97831 0.95154 0.88754 1.22234 0.97958 0.90068 0.96483 0.92222 1.00961 1.00511 0.95207 0.93977 0.86814 0.90290 0.97129 0.89203 0.90021 0.87913 0.91052 0.90571 0.90639 0.93308 0.89586 0.91939 0.93406 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.53 -31.58 9.43 25.60 0.24 -31.34 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.21 12.30 5.69 71.23 0.41 12.70 16 10 O -0.39 -19.03 6.77 -148.98 -1.01 -20.03 16 11 C 0.02 0.68 5.75 71.98 0.41 1.09 16 12 C 0.07 2.01 5.93 86.30 0.51 2.52 16 13 N -0.53 -16.17 4.86 -896.45 -4.35 -20.53 16 14 C 0.05 1.47 4.92 86.33 0.42 1.89 16 15 C -0.10 -2.34 5.82 30.64 0.18 -2.17 16 16 C 0.09 2.31 2.88 30.67 0.09 2.40 16 17 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 18 O -0.40 -13.53 9.24 -148.98 -1.38 -14.90 16 19 C 0.07 2.08 6.84 72.01 0.49 2.57 16 20 C -0.16 -5.42 5.77 30.69 0.18 -5.24 16 21 C -0.11 -2.93 5.52 30.70 0.17 -2.76 16 22 C -0.11 -3.09 2.67 -10.70 -0.03 -3.12 16 23 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 24 C 0.06 2.12 3.11 86.32 0.27 2.39 16 25 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 26 H -0.03 -1.70 8.14 -2.38 -0.02 -1.72 16 27 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 28 H 0.03 1.21 6.46 -2.39 -0.02 1.20 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.11 2.67 8.06 -2.39 -0.02 2.65 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.01 0.38 6.26 -2.39 -0.01 0.36 16 33 H 0.09 2.08 8.06 -2.39 -0.02 2.06 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 37 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.05 2.12 6.57 -2.39 -0.02 2.10 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.82 8.12 -2.38 -0.02 1.80 16 43 H 0.06 2.54 3.50 -2.39 -0.01 2.53 16 Total: -1.00 -68.14 323.82 0.34 -67.80 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.96 Total: 16.01 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 3.81 Total: -18.16 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -4.07 Total: -77.34 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -2.39 Total: -34.94 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -68.14 0.34 -67.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261237584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.270 kcal (2) G-P(sol) polarization free energy of solvation -68.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds