Wall clock time and date at job start Mon Mar 30 2020 01:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00016 * 2 1 4 4 H 1.48498 * 109.46903 * 270.00505 * 3 2 1 5 5 H 1.48498 * 109.46912 * 30.00221 * 3 2 1 6 6 H 1.48496 * 109.46855 * 150.00257 * 3 2 1 7 7 C 1.37876 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00476 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99900 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.46927 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99648 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47211 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47192 * 62.30929 * 12 11 10 14 14 C 1.46851 * 110.99796 * 52.04052 * 13 12 11 15 15 C 1.53030 * 109.50047 * 185.88341 * 14 13 12 16 16 C 1.53104 * 109.29093 * 300.78569 * 15 14 13 17 17 H 1.09001 * 109.52886 * 177.53368 * 16 15 14 18 18 O 1.42871 * 109.40386 * 297.81319 * 16 15 14 19 19 C 1.42899 * 114.15427 * 180.61913 * 18 16 15 20 20 C 1.53095 * 109.40751 * 298.85175 * 19 18 16 21 21 C 1.53812 * 109.28762 * 57.66523 * 20 19 18 22 22 C 1.53128 * 109.20070 * 57.59298 * 16 15 14 23 23 H 1.08998 * 109.55418 * 62.55420 * 22 16 15 24 24 C 1.46836 * 111.00018 * 176.24949 * 13 12 11 25 25 H 0.96995 * 119.99735 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47115 * 60.00150 * 9 7 2 27 27 H 1.09000 * 109.47026 * 299.99961 * 9 7 2 28 28 H 1.09000 * 109.47215 * 299.99604 * 11 10 9 29 29 H 1.09001 * 109.47437 * 59.99690 * 11 10 9 30 30 H 1.08995 * 109.47637 * 182.31659 * 12 11 10 31 31 H 1.09007 * 109.47095 * 302.31378 * 12 11 10 32 32 H 1.08998 * 109.46340 * 305.89360 * 14 13 12 33 33 H 1.08997 * 109.46805 * 65.87119 * 14 13 12 34 34 H 1.09007 * 109.50454 * 180.84650 * 15 14 13 35 35 H 1.08995 * 109.50557 * 60.72935 * 15 14 13 36 36 H 1.09005 * 109.47973 * 58.83136 * 19 18 16 37 37 H 1.08993 * 109.48294 * 178.85293 * 19 18 16 38 38 H 1.08997 * 109.52607 * 177.56319 * 20 19 18 39 39 H 1.08999 * 109.52626 * 297.76975 * 20 19 18 40 40 H 1.09002 * 109.93279 * 183.25805 * 21 20 19 41 41 H 1.09001 * 109.47328 * 62.80814 * 21 20 19 42 42 H 1.09002 * 109.45826 * 294.22033 * 24 13 12 43 43 H 1.08995 * 109.45885 * 54.18144 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6479 -5.9562 -0.0017 13 7 3.4493 -5.8472 1.2247 14 6 2.5898 -5.8319 2.4153 15 6 3.4434 -5.5708 3.6582 16 6 4.5019 -6.6697 3.7848 17 1 5.1400 -6.4638 4.6442 18 8 3.8565 -7.9329 3.9558 19 6 4.7557 -9.0342 4.0991 20 6 5.6124 -9.1591 2.8364 21 6 6.3691 -7.8405 2.6034 22 6 5.3519 -6.6993 2.5115 23 1 5.8770 -5.7506 2.4013 24 6 4.4433 -6.9252 1.3013 25 1 -0.4849 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 0.9447 -4.9827 0.8887 29 1 0.9451 -4.9822 -0.8913 30 1 2.1798 -6.9396 -0.0437 31 1 3.2932 -5.8236 -0.8703 32 1 1.8439 -5.0434 2.3146 33 1 2.0890 -6.7949 2.5142 34 1 2.8076 -5.5743 4.5437 35 1 3.9341 -4.6020 3.5658 36 1 5.4012 -8.8667 4.9613 37 1 4.1861 -9.9520 4.2444 38 1 6.3285 -9.9714 2.9609 39 1 4.9709 -9.3657 1.9798 40 1 6.9380 -7.8974 1.6754 41 1 7.0470 -7.6583 3.4373 42 1 3.9331 -7.8830 1.4042 43 1 5.0445 -6.9300 0.3922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261237585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:17 Heat of formation + Delta-G solvation = -97.814782 kcal Electronic energy + Delta-G solvation = -21688.260762 eV Core-core repulsion = 18540.004037 eV Total energy + Delta-G solvation = -3148.256725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41825 -37.62747 -36.03361 -34.10060 -32.96147 -32.36966 -29.97227 -28.86017 -26.73682 -25.41158 -24.01815 -23.23547 -22.24095 -21.87553 -20.19450 -18.87687 -16.42606 -16.31866 -16.22480 -15.87955 -15.36720 -15.30570 -14.86153 -14.49930 -14.21574 -13.76313 -13.67222 -13.15426 -13.10881 -12.76872 -12.64691 -12.16015 -12.09888 -11.70362 -11.55212 -11.39965 -11.06104 -10.88380 -10.81254 -10.73570 -10.59007 -10.52459 -10.36562 -10.07398 -9.77020 -9.42181 -9.02485 -8.72987 -8.07812 -7.88720 -6.05098 -4.05864 3.34272 3.39007 3.45022 3.69381 4.10562 4.40460 4.58476 4.60853 4.70708 4.76533 4.94479 5.01967 5.14366 5.24496 5.30712 5.31402 5.42853 5.49621 5.52165 5.60519 5.63761 5.65961 5.72378 5.76773 5.82959 5.93158 5.98000 6.05919 6.09959 6.14373 6.17202 6.36872 6.38813 6.42815 7.17192 7.18192 7.40263 7.43132 7.50204 7.87012 8.23404 8.68589 9.09211 9.58865 11.06642 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.003879 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.665028 B = 7216.579569 C = 7425.903870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.378 6.378 11 C 0.061 3.939 12 C 0.064 3.936 13 N -0.524 5.524 14 C 0.056 3.944 15 C -0.107 4.107 16 C 0.095 3.905 17 H 0.056 0.944 18 O -0.377 6.377 19 C 0.062 3.938 20 C -0.158 4.158 21 C -0.116 4.116 22 C -0.115 4.115 23 H 0.090 0.910 24 C 0.067 3.933 25 H 0.263 0.737 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.753 -18.753 6.956 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.298 6.298 11 C -0.017 4.017 12 C -0.064 4.064 13 N -0.248 5.248 14 C -0.071 4.071 15 C -0.145 4.145 16 C 0.037 3.963 17 H 0.074 0.926 18 O -0.296 6.296 19 C -0.015 4.015 20 C -0.196 4.196 21 C -0.154 4.154 22 C -0.134 4.134 23 H 0.108 0.892 24 C -0.061 4.061 25 H 0.072 0.928 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.840 -18.164 6.938 21.792 hybrid contribution -0.096 0.067 -0.044 0.125 sum 9.744 -18.097 6.894 21.679 Atomic orbital electron populations 1.69969 1.06099 1.27017 1.50942 1.24946 0.94946 0.99376 0.95301 0.86354 0.79706 0.82364 0.78173 1.20542 1.21164 1.19609 1.21068 0.94092 0.89342 1.50256 0.91512 1.20177 0.88875 0.83974 0.95074 1.87967 1.34540 1.12254 1.95009 1.22349 0.94025 0.86365 0.98967 1.22096 0.95405 0.95807 0.93066 1.61815 1.16233 1.44944 1.01843 1.22068 0.95324 1.00530 0.89222 1.21616 0.97373 0.97457 0.98055 1.22145 0.94329 0.84103 0.95720 0.92626 1.87932 1.33208 1.15135 1.93337 1.22500 0.92788 0.90116 0.96099 1.22337 0.99596 0.98067 0.99598 1.21708 0.97346 0.94188 1.02178 1.21748 0.96291 0.99684 0.95650 0.89209 1.22016 0.94184 0.92544 0.97388 0.92766 0.98048 0.97972 0.94339 0.94344 0.94680 0.90253 0.89628 0.94832 0.90963 0.89239 0.93542 0.89298 0.91256 0.90915 0.91250 0.91790 0.94624 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -15.29 9.43 -34.44 -0.32 -15.62 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.42 5.69 36.01 0.20 5.63 16 10 O -0.38 -9.38 10.23 -35.23 -0.36 -9.74 16 11 C 0.06 1.17 5.56 37.16 0.21 1.38 16 12 C 0.06 1.03 5.52 -3.82 -0.02 1.01 16 13 N -0.52 -8.40 4.67 -234.70 -1.10 -9.50 16 14 C 0.06 0.88 4.91 -3.84 -0.02 0.86 16 15 C -0.11 -1.48 5.82 -26.66 -0.16 -1.63 16 16 C 0.09 1.14 2.88 -26.61 -0.08 1.07 16 17 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 18 O -0.38 -4.66 9.25 -35.23 -0.33 -4.99 16 19 C 0.06 0.57 6.85 37.21 0.25 0.82 16 20 C -0.16 -1.33 5.78 -26.26 -0.15 -1.48 16 21 C -0.12 -1.05 5.58 -26.23 -0.15 -1.20 16 22 C -0.11 -1.34 2.65 -90.47 -0.24 -1.58 16 23 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 24 C 0.07 0.87 4.34 -3.85 -0.02 0.86 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 27 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.04 0.72 6.05 -51.93 -0.31 0.41 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.51 5.79 -51.93 -0.30 1.21 16 33 H 0.03 0.51 7.75 -51.93 -0.40 0.11 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.67 6.58 -51.93 -0.34 0.33 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.04 0.47 6.07 -51.93 -0.32 0.15 16 43 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -32.03 329.23 -9.25 -41.27 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -7.56 Total: -4.18 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -0.58 Total: -8.37 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.36 Total: -36.12 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.69 Total: -14.73 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.03 -9.25 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261237585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.540 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds