Wall clock time and date at job start Mon Mar 30 2020 01:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00016 * 2 1 4 4 H 1.48498 * 109.46903 * 270.00505 * 3 2 1 5 5 H 1.48498 * 109.46912 * 30.00221 * 3 2 1 6 6 H 1.48496 * 109.46855 * 150.00257 * 3 2 1 7 7 C 1.37876 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00476 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99900 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.46927 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99648 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47211 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47192 * 62.30929 * 12 11 10 14 14 C 1.46851 * 110.99796 * 52.04052 * 13 12 11 15 15 C 1.53030 * 109.50047 * 185.88341 * 14 13 12 16 16 C 1.53104 * 109.29093 * 300.78569 * 15 14 13 17 17 H 1.09001 * 109.52886 * 177.53368 * 16 15 14 18 18 O 1.42871 * 109.40386 * 297.81319 * 16 15 14 19 19 C 1.42899 * 114.15427 * 180.61913 * 18 16 15 20 20 C 1.53095 * 109.40751 * 298.85175 * 19 18 16 21 21 C 1.53812 * 109.28762 * 57.66523 * 20 19 18 22 22 C 1.53128 * 109.20070 * 57.59298 * 16 15 14 23 23 H 1.08998 * 109.55418 * 62.55420 * 22 16 15 24 24 C 1.46836 * 111.00018 * 176.24949 * 13 12 11 25 25 H 0.96995 * 119.99735 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47115 * 60.00150 * 9 7 2 27 27 H 1.09000 * 109.47026 * 299.99961 * 9 7 2 28 28 H 1.09000 * 109.47215 * 299.99604 * 11 10 9 29 29 H 1.09001 * 109.47437 * 59.99690 * 11 10 9 30 30 H 1.08995 * 109.47637 * 182.31659 * 12 11 10 31 31 H 1.09007 * 109.47095 * 302.31378 * 12 11 10 32 32 H 1.08998 * 109.46340 * 305.89360 * 14 13 12 33 33 H 1.08997 * 109.46805 * 65.87119 * 14 13 12 34 34 H 1.09007 * 109.50454 * 180.84650 * 15 14 13 35 35 H 1.08995 * 109.50557 * 60.72935 * 15 14 13 36 36 H 1.09005 * 109.47973 * 58.83136 * 19 18 16 37 37 H 1.08993 * 109.48294 * 178.85293 * 19 18 16 38 38 H 1.08997 * 109.52607 * 177.56319 * 20 19 18 39 39 H 1.08999 * 109.52626 * 297.76975 * 20 19 18 40 40 H 1.09002 * 109.93279 * 183.25805 * 21 20 19 41 41 H 1.09001 * 109.47328 * 62.80814 * 21 20 19 42 42 H 1.09002 * 109.45826 * 294.22033 * 24 13 12 43 43 H 1.08995 * 109.45885 * 54.18144 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6479 -5.9562 -0.0017 13 7 3.4493 -5.8472 1.2247 14 6 2.5898 -5.8319 2.4153 15 6 3.4434 -5.5708 3.6582 16 6 4.5019 -6.6697 3.7848 17 1 5.1400 -6.4638 4.6442 18 8 3.8565 -7.9329 3.9558 19 6 4.7557 -9.0342 4.0991 20 6 5.6124 -9.1591 2.8364 21 6 6.3691 -7.8405 2.6034 22 6 5.3519 -6.6993 2.5115 23 1 5.8770 -5.7506 2.4013 24 6 4.4433 -6.9252 1.3013 25 1 -0.4849 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 0.9447 -4.9827 0.8887 29 1 0.9451 -4.9822 -0.8913 30 1 2.1798 -6.9396 -0.0437 31 1 3.2932 -5.8236 -0.8703 32 1 1.8439 -5.0434 2.3146 33 1 2.0890 -6.7949 2.5142 34 1 2.8076 -5.5743 4.5437 35 1 3.9341 -4.6020 3.5658 36 1 5.4012 -8.8667 4.9613 37 1 4.1861 -9.9520 4.2444 38 1 6.3285 -9.9714 2.9609 39 1 4.9709 -9.3657 1.9798 40 1 6.9380 -7.8974 1.6754 41 1 7.0470 -7.6583 3.4373 42 1 3.9331 -7.8830 1.4042 43 1 5.0445 -6.9300 0.3922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261237585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:16 Heat of formation + Delta-G solvation = -119.579542 kcal Electronic energy + Delta-G solvation = -21689.204553 eV Core-core repulsion = 18540.004037 eV Total energy + Delta-G solvation = -3149.200516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.37399 -39.05818 -37.59981 -35.04689 -34.84446 -33.75980 -30.96789 -30.40804 -28.73922 -26.29684 -25.24093 -24.44913 -24.15435 -22.95365 -21.43759 -19.79236 -18.59436 -17.60267 -17.44163 -17.13253 -16.64170 -16.46263 -16.24795 -16.00052 -15.76068 -14.92959 -14.84372 -14.74937 -14.20110 -13.89808 -13.81071 -13.56449 -13.29812 -13.01907 -12.97989 -12.83265 -12.67669 -12.50214 -12.26276 -12.08224 -11.87117 -11.74444 -11.62520 -11.31414 -11.21400 -10.94042 -10.82238 -10.27661 -10.16904 -9.10129 -8.30658 -6.42630 1.40332 1.43477 1.55741 2.36090 2.81567 2.97092 3.03009 3.24251 3.67884 3.79785 3.86036 4.02508 4.09415 4.14027 4.22295 4.27146 4.34317 4.41437 4.48604 4.56211 4.57355 4.65851 4.67581 4.77640 4.83880 4.86062 4.88126 4.93104 4.97883 5.00595 5.10879 5.15821 5.19491 5.26574 5.29931 5.39294 5.56920 5.98442 6.15879 6.26046 6.36136 6.57626 6.86530 7.29542 8.81858 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.003879 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.665028 B = 7216.579569 C = 7425.903870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.209 3.791 10 O -0.392 6.392 11 C 0.053 3.947 12 C 0.071 3.929 13 N -0.546 5.546 14 C 0.062 3.938 15 C -0.108 4.108 16 C 0.099 3.901 17 H 0.069 0.931 18 O -0.397 6.397 19 C 0.055 3.945 20 C -0.154 4.154 21 C -0.112 4.112 22 C -0.114 4.114 23 H 0.077 0.923 24 C 0.070 3.930 25 H 0.270 0.730 26 H -0.017 1.017 27 H -0.018 1.018 28 H 0.040 0.960 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.470 -19.501 7.349 23.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.311 6.311 11 C -0.024 4.024 12 C -0.056 4.056 13 N -0.271 5.271 14 C -0.065 4.065 15 C -0.146 4.146 16 C 0.042 3.958 17 H 0.087 0.913 18 O -0.317 6.317 19 C -0.022 4.022 20 C -0.191 4.191 21 C -0.149 4.149 22 C -0.133 4.133 23 H 0.095 0.905 24 C -0.057 4.057 25 H 0.079 0.921 26 H 0.001 0.999 27 H -0.001 1.001 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.561 -18.946 7.330 23.373 hybrid contribution -0.683 0.200 -0.156 0.729 sum 10.877 -18.746 7.174 22.829 Atomic orbital electron populations 1.70076 1.07774 1.28588 1.50706 1.25961 0.95946 1.03363 0.93937 0.85184 0.78372 0.77007 0.78851 1.19243 1.19873 1.18902 1.21370 0.94028 0.90834 1.51978 0.92157 1.19791 0.88677 0.85043 0.93080 1.87920 1.34521 1.13659 1.95033 1.22660 0.95577 0.84775 0.99417 1.22025 0.94681 0.95497 0.93429 1.61814 1.16772 1.46839 1.01697 1.21937 0.95113 0.99426 0.90061 1.21589 0.97832 0.97804 0.97380 1.22035 0.93591 0.83726 0.96466 0.91284 1.87899 1.34570 1.15686 1.93511 1.22738 0.92972 0.89469 0.96986 1.22312 0.99700 0.98333 0.98778 1.21697 0.96764 0.93324 1.03154 1.21743 0.96492 1.00366 0.94732 0.90461 1.22057 0.93623 0.91613 0.98436 0.92085 0.99941 1.00074 0.94207 0.93502 0.91970 0.90081 0.92580 0.94594 0.90386 0.90646 0.92311 0.88070 0.88953 0.91821 0.90494 0.90552 0.94244 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.98 45.34 29.54 68.60 2.03 47.37 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.54 -33.47 9.43 25.60 0.24 -33.22 16 8 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 9 C 0.21 12.22 5.69 71.24 0.41 12.63 16 10 O -0.39 -20.08 10.23 -148.98 -1.52 -21.61 16 11 C 0.05 2.08 5.56 71.98 0.40 2.49 16 12 C 0.07 2.26 5.52 86.30 0.48 2.74 16 13 N -0.55 -17.48 4.67 -896.46 -4.19 -21.66 16 14 C 0.06 1.98 4.91 86.32 0.42 2.41 16 15 C -0.11 -3.01 5.82 30.64 0.18 -2.83 16 16 C 0.10 2.29 2.88 30.67 0.09 2.37 16 17 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 18 O -0.40 -9.16 9.25 -148.98 -1.38 -10.53 16 19 C 0.05 0.86 6.85 72.01 0.49 1.35 16 20 C -0.15 -2.13 5.78 30.90 0.18 -1.95 16 21 C -0.11 -1.73 5.58 30.92 0.17 -1.56 16 22 C -0.11 -2.51 2.65 -10.70 -0.03 -2.54 16 23 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 24 C 0.07 1.76 4.34 86.32 0.37 2.13 16 25 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 26 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 27 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 28 H 0.04 1.56 6.05 -2.39 -0.01 1.55 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 32 H 0.06 2.08 5.79 -2.39 -0.01 2.07 16 33 H 0.04 1.10 7.75 -2.39 -0.02 1.09 16 34 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 1.01 6.58 -2.39 -0.02 1.00 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.04 0.97 6.07 -2.39 -0.01 0.96 16 43 H 0.07 1.76 8.12 -2.39 -0.02 1.75 16 Total: -1.00 -69.27 329.23 0.05 -69.22 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.96 Total: 9.31 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 3.87 Total: -15.17 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -3.90 Total: -78.59 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -2.90 Total: -32.14 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -69.27 0.05 -69.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261237585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.358 kcal (2) G-P(sol) polarization free energy of solvation -69.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds