Wall clock time and date at job start Mon Mar 30 2020 01:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48498 * 109.46813 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47161 * 300.00086 * 3 2 1 6 6 H 1.48503 * 109.46917 * 60.00168 * 3 2 1 7 7 C 1.37883 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99779 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.87731 * 62.39522 * 9 7 2 11 11 C 1.55138 * 110.99090 * 298.54339 * 9 7 2 12 12 C 1.54321 * 103.01592 * 206.25694 * 11 9 7 13 13 N 1.47438 * 107.23562 * 22.28561 * 12 11 9 14 14 C 1.46905 * 110.99763 * 123.25495 * 13 12 11 15 15 C 1.53000 * 109.46881 * 75.60963 * 14 13 12 16 16 C 1.53001 * 109.47411 * 65.32753 * 15 14 13 17 17 C 1.53004 * 109.46904 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47067 * 299.99900 * 17 16 15 19 19 O 1.42896 * 109.47265 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47177 * 60.00267 * 18 17 16 21 21 C 1.52997 * 109.46792 * 185.32796 * 15 14 13 22 22 C 1.47843 * 108.56860 * 0.98712 * 13 12 11 23 23 H 0.97003 * 119.99394 * 359.97438 * 1 2 3 24 24 H 0.96702 * 113.99679 * 297.60958 * 10 9 7 25 25 H 1.09002 * 110.70449 * 87.87722 * 11 9 7 26 26 H 1.08996 * 110.86058 * 324.70892 * 11 9 7 27 27 H 1.09000 * 109.89228 * 262.87878 * 12 11 9 28 28 H 1.09003 * 110.02222 * 141.76915 * 12 11 9 29 29 H 1.08994 * 109.47410 * 315.60512 * 14 13 12 30 30 H 1.08999 * 109.47055 * 195.60332 * 14 13 12 31 31 H 1.09002 * 109.46869 * 305.32340 * 15 14 13 32 32 H 1.08995 * 109.46936 * 60.00355 * 16 15 14 33 33 H 1.08994 * 109.46957 * 299.99717 * 16 15 14 34 34 H 1.09002 * 109.46742 * 180.02562 * 17 16 15 35 35 H 1.08993 * 109.47053 * 59.99890 * 17 16 15 36 36 H 1.09005 * 109.47501 * 300.00123 * 18 17 16 37 37 H 0.96698 * 114.00675 * 179.97438 * 19 18 17 38 38 H 1.08992 * 109.47051 * 60.00210 * 20 18 17 39 39 H 1.09003 * 109.47161 * 180.02562 * 20 18 17 40 40 H 1.08995 * 109.47635 * 299.99693 * 21 15 14 41 41 H 1.09002 * 109.47225 * 59.99983 * 21 15 14 42 42 H 1.09004 * 110.36987 * 94.72913 * 22 13 12 43 43 H 1.08995 * 110.37793 * 217.07227 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4600 -2.6305 -1.1835 11 6 0.3741 -2.6346 1.2722 12 6 0.2539 -4.1628 1.4504 13 7 1.3920 -4.7761 0.7416 14 6 2.1863 -5.6157 1.6484 15 6 1.4445 -6.9282 1.9092 16 6 1.3494 -7.7275 0.6081 17 6 0.6081 -9.0403 0.8691 18 6 1.3699 -9.8569 1.9149 19 8 0.6779 -11.0832 2.1582 20 6 1.4649 -9.0575 3.2160 21 6 2.2057 -7.7450 2.9551 22 6 2.2184 -3.6987 0.1569 23 1 -0.4849 0.8401 0.0004 24 1 -0.2256 -1.9547 -1.2752 25 1 -0.6069 -2.1867 1.1137 26 1 0.8675 -2.1838 2.1332 27 1 -0.6838 -4.5138 1.0198 28 1 0.2946 -4.4193 2.5090 29 1 2.3374 -5.0902 2.5913 30 1 3.1531 -5.8292 1.1925 31 1 0.4414 -6.7117 2.2768 32 1 2.3524 -7.9440 0.2406 33 1 0.8071 -7.1456 -0.1371 34 1 0.5408 -9.6100 -0.0578 35 1 -0.3949 -8.8242 1.2369 36 1 2.3730 -10.0730 1.5471 37 1 1.1053 -11.6531 2.8122 38 1 0.4619 -8.8415 3.5838 39 1 2.0081 -9.6391 3.9609 40 1 3.2087 -7.9615 2.5877 41 1 2.2734 -7.1755 3.8821 42 1 3.0365 -3.4405 0.8295 43 1 2.6068 -4.0031 -0.8149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261640193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:07 Heat of formation + Delta-G solvation = -121.034191 kcal Electronic energy + Delta-G solvation = -21650.133971 eV Core-core repulsion = 18500.870377 eV Total energy + Delta-G solvation = -3149.263595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.38367 -38.13435 -36.03928 -34.34872 -32.11883 -31.04338 -30.80830 -28.53228 -28.00464 -25.14379 -23.73752 -22.68673 -21.35558 -20.10781 -19.59433 -19.23514 -17.33415 -16.99917 -15.59256 -15.22487 -14.92905 -14.84608 -14.50641 -14.20733 -13.78972 -13.56141 -13.14712 -12.87550 -12.40058 -12.29923 -12.18765 -11.92151 -11.68690 -11.38541 -11.26516 -11.16219 -11.07367 -11.02208 -10.79554 -10.42520 -10.40272 -10.29742 -10.21244 -10.05731 -9.82734 -9.76233 -9.15391 -8.58905 -8.05366 -7.54223 -6.20278 -4.28325 3.20746 3.29551 3.33582 4.06927 4.29344 4.54795 4.63688 4.75762 4.97453 5.07961 5.13739 5.24641 5.35163 5.48917 5.52218 5.52984 5.73207 5.76051 5.85117 5.88547 5.93731 6.03405 6.07869 6.09842 6.15344 6.19968 6.23948 6.34894 6.49810 6.58397 6.60834 6.71666 6.90402 7.10764 7.44133 7.49415 7.51496 7.68569 7.81581 7.86642 8.19190 8.74335 9.40398 9.54042 10.86559 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047881 B = 0.003768 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.643275 B = 7428.452591 C = 7575.951553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.251 3.749 10 O -0.579 6.579 11 C -0.144 4.144 12 C 0.044 3.956 13 N -0.525 5.525 14 C 0.055 3.945 15 C -0.081 4.081 16 C -0.102 4.102 17 C -0.112 4.112 18 C 0.104 3.896 19 O -0.571 6.571 20 C -0.148 4.148 21 C -0.113 4.113 22 C 0.059 3.941 23 H 0.265 0.735 24 H 0.376 0.624 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.373 0.627 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.730 -15.222 6.257 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.211 3.789 10 O -0.386 6.386 11 C -0.183 4.183 12 C -0.083 4.083 13 N -0.248 5.248 14 C -0.074 4.074 15 C -0.100 4.100 16 C -0.139 4.139 17 C -0.150 4.150 18 C 0.045 3.955 19 O -0.377 6.377 20 C -0.186 4.186 21 C -0.151 4.151 22 C -0.068 4.068 23 H 0.075 0.925 24 H 0.225 0.775 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.220 0.780 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.388 -15.692 5.318 16.740 hybrid contribution 0.796 1.781 1.395 2.398 sum 3.184 -13.911 6.714 15.771 Atomic orbital electron populations 1.69755 1.05917 1.27216 1.50477 1.25006 0.94982 0.99399 0.93754 0.86436 0.80146 0.83137 0.77658 1.19709 1.20784 1.20955 1.21597 0.93547 0.90779 1.51470 0.92138 1.19530 0.86857 0.90618 0.81902 1.86145 1.51335 1.56628 1.44508 1.23243 1.02578 0.91995 1.00487 1.22851 0.94440 0.96076 0.94976 1.63536 1.08920 1.21186 1.31192 1.22281 0.96490 0.93629 0.94992 1.21155 0.99546 0.94243 0.95060 1.21434 1.00456 0.94023 0.98010 1.21528 0.99752 0.95826 0.97866 1.21903 0.94979 0.83663 0.94944 1.86531 1.54628 1.31717 1.64800 1.22220 1.01549 0.97168 0.97631 1.21517 0.99067 0.95255 0.99237 1.22974 0.95121 0.90465 0.98206 0.92478 0.77490 0.90559 0.92816 0.91906 0.94695 0.95184 0.91655 0.91147 0.92455 0.89532 0.91632 0.91452 0.92975 0.78032 0.91236 0.92193 0.91948 0.91885 0.93745 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 10.75 55.43 0.60 -23.33 16 2 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 3 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.54 -14.40 8.27 -34.44 -0.28 -14.68 16 8 H 0.06 1.62 7.79 -52.49 -0.41 1.21 16 9 C 0.25 6.25 0.87 -89.63 -0.08 6.18 16 10 O -0.58 -15.21 13.16 -35.23 -0.46 -15.67 16 11 C -0.14 -3.33 5.37 -24.91 -0.13 -3.46 16 12 C 0.04 0.87 6.23 -2.84 -0.02 0.85 16 13 N -0.52 -9.97 4.59 -231.25 -1.06 -11.03 16 14 C 0.05 0.85 3.97 -3.82 -0.02 0.83 16 15 C -0.08 -1.05 2.23 -90.62 -0.20 -1.25 16 16 C -0.10 -1.30 5.09 -26.73 -0.14 -1.44 16 17 C -0.11 -1.33 5.57 -26.73 -0.15 -1.48 16 18 C 0.10 1.08 3.47 -26.73 -0.09 0.98 16 19 O -0.57 -6.00 13.32 -35.23 -0.47 -6.47 16 20 C -0.15 -1.42 5.54 -26.76 -0.15 -1.57 16 21 C -0.11 -1.19 5.20 -26.76 -0.14 -1.33 16 22 C 0.06 1.29 5.81 -2.30 -0.01 1.28 16 23 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 24 H 0.38 9.96 7.56 45.56 0.34 10.31 16 25 H 0.08 1.88 7.54 -51.93 -0.39 1.49 16 26 H 0.05 1.28 8.04 -51.93 -0.42 0.86 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.03 0.62 7.19 -51.93 -0.37 0.25 16 29 H 0.03 0.47 7.78 -51.93 -0.40 0.07 16 30 H 0.06 0.97 7.99 -51.93 -0.42 0.55 16 31 H 0.07 0.99 7.46 -51.93 -0.39 0.60 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.30 7.76 -51.93 -0.40 0.90 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.37 2.26 9.08 45.56 0.41 2.67 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.94 7.70 -51.93 -0.40 0.54 16 43 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 331.21 15.07 4.99 4.99 Total: -1.00 -28.28 331.21 -9.14 -37.41 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -6.20 Total: 11.77 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.50 Total: -13.32 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: -0.46 Total: -34.37 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.93 Total: -22.14 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.28 -9.14 -37.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261640193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.620 kcal (2) G-P(sol) polarization free energy of solvation -28.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds