Wall clock time and date at job start Mon Mar 30 2020 01:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48498 * 109.46813 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47161 * 300.00086 * 3 2 1 6 6 H 1.48503 * 109.46917 * 60.00168 * 3 2 1 7 7 C 1.37883 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99779 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.87731 * 62.39522 * 9 7 2 11 11 C 1.55138 * 110.99090 * 298.54339 * 9 7 2 12 12 C 1.54321 * 103.01592 * 206.25694 * 11 9 7 13 13 N 1.47438 * 107.23562 * 22.28561 * 12 11 9 14 14 C 1.46905 * 110.99763 * 123.25495 * 13 12 11 15 15 C 1.53000 * 109.46881 * 75.60963 * 14 13 12 16 16 C 1.53001 * 109.47411 * 65.32753 * 15 14 13 17 17 C 1.53004 * 109.46904 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47067 * 299.99900 * 17 16 15 19 19 O 1.42896 * 109.47265 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47177 * 60.00267 * 18 17 16 21 21 C 1.52997 * 109.46792 * 185.32796 * 15 14 13 22 22 C 1.47843 * 108.56860 * 0.98712 * 13 12 11 23 23 H 0.97003 * 119.99394 * 359.97438 * 1 2 3 24 24 H 0.96702 * 113.99679 * 297.60958 * 10 9 7 25 25 H 1.09002 * 110.70449 * 87.87722 * 11 9 7 26 26 H 1.08996 * 110.86058 * 324.70892 * 11 9 7 27 27 H 1.09000 * 109.89228 * 262.87878 * 12 11 9 28 28 H 1.09003 * 110.02222 * 141.76915 * 12 11 9 29 29 H 1.08994 * 109.47410 * 315.60512 * 14 13 12 30 30 H 1.08999 * 109.47055 * 195.60332 * 14 13 12 31 31 H 1.09002 * 109.46869 * 305.32340 * 15 14 13 32 32 H 1.08995 * 109.46936 * 60.00355 * 16 15 14 33 33 H 1.08994 * 109.46957 * 299.99717 * 16 15 14 34 34 H 1.09002 * 109.46742 * 180.02562 * 17 16 15 35 35 H 1.08993 * 109.47053 * 59.99890 * 17 16 15 36 36 H 1.09005 * 109.47501 * 300.00123 * 18 17 16 37 37 H 0.96698 * 114.00675 * 179.97438 * 19 18 17 38 38 H 1.08992 * 109.47051 * 60.00210 * 20 18 17 39 39 H 1.09003 * 109.47161 * 180.02562 * 20 18 17 40 40 H 1.08995 * 109.47635 * 299.99693 * 21 15 14 41 41 H 1.09002 * 109.47225 * 59.99983 * 21 15 14 42 42 H 1.09004 * 110.36987 * 94.72913 * 22 13 12 43 43 H 1.08995 * 110.37793 * 217.07227 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4600 -2.6305 -1.1835 11 6 0.3741 -2.6346 1.2722 12 6 0.2539 -4.1628 1.4504 13 7 1.3920 -4.7761 0.7416 14 6 2.1863 -5.6157 1.6484 15 6 1.4445 -6.9282 1.9092 16 6 1.3494 -7.7275 0.6081 17 6 0.6081 -9.0403 0.8691 18 6 1.3699 -9.8569 1.9149 19 8 0.6779 -11.0832 2.1582 20 6 1.4649 -9.0575 3.2160 21 6 2.2057 -7.7450 2.9551 22 6 2.2184 -3.6987 0.1569 23 1 -0.4849 0.8401 0.0004 24 1 -0.2256 -1.9547 -1.2752 25 1 -0.6069 -2.1867 1.1137 26 1 0.8675 -2.1838 2.1332 27 1 -0.6838 -4.5138 1.0198 28 1 0.2946 -4.4193 2.5090 29 1 2.3374 -5.0902 2.5913 30 1 3.1531 -5.8292 1.1925 31 1 0.4414 -6.7117 2.2768 32 1 2.3524 -7.9440 0.2406 33 1 0.8071 -7.1456 -0.1371 34 1 0.5408 -9.6100 -0.0578 35 1 -0.3949 -8.8242 1.2369 36 1 2.3730 -10.0730 1.5471 37 1 1.1053 -11.6531 2.8122 38 1 0.4619 -8.8415 3.5838 39 1 2.0081 -9.6391 3.9609 40 1 3.2087 -7.9615 2.5877 41 1 2.2734 -7.1755 3.8821 42 1 3.0365 -3.4405 0.8295 43 1 2.6068 -4.0031 -0.8149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261640193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:06 Heat of formation + Delta-G solvation = -142.184118 kcal Electronic energy + Delta-G solvation = -21651.051101 eV Core-core repulsion = 18500.870377 eV Total energy + Delta-G solvation = -3150.180724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56152 -39.53811 -37.21390 -35.89932 -34.18131 -32.37963 -31.70600 -30.04129 -29.75546 -26.81488 -25.20430 -23.60629 -22.56398 -21.45454 -21.25428 -20.48673 -18.99871 -18.11968 -16.99396 -16.85863 -16.57518 -16.25218 -15.80633 -15.40666 -15.21828 -14.70308 -14.47360 -14.10696 -14.02010 -13.71764 -13.38490 -13.26154 -13.13789 -13.05596 -12.87469 -12.68100 -12.42948 -12.28195 -12.22281 -12.14600 -11.97419 -11.66280 -11.44563 -11.33938 -11.08460 -10.94467 -10.62427 -10.59230 -10.06691 -9.09240 -8.21995 -6.37968 1.38118 1.41556 1.52023 2.37391 3.02100 3.15875 3.34183 3.75361 3.86069 3.90665 4.04907 4.09540 4.21509 4.30484 4.35149 4.44784 4.46555 4.56073 4.58342 4.63538 4.70907 4.78712 4.84567 4.92573 4.99286 5.07902 5.11216 5.17636 5.22216 5.25858 5.28109 5.37595 5.48726 5.54349 5.56821 5.58937 5.80343 5.99463 6.25353 6.36726 6.68356 6.95031 7.33781 7.45542 8.83265 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047881 B = 0.003768 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.643275 B = 7428.452591 C = 7575.951553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.029 3.971 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.561 4.561 8 H 0.054 0.946 9 C 0.233 3.767 10 O -0.587 6.587 11 C -0.135 4.135 12 C 0.055 3.945 13 N -0.527 5.527 14 C 0.054 3.946 15 C -0.075 4.075 16 C -0.096 4.096 17 C -0.111 4.111 18 C 0.106 3.894 19 O -0.588 6.588 20 C -0.142 4.142 21 C -0.107 4.107 22 C 0.068 3.932 23 H 0.268 0.732 24 H 0.371 0.629 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.393 0.607 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 -16.343 7.473 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.600 4.600 8 H 0.072 0.928 9 C 0.193 3.807 10 O -0.395 6.395 11 C -0.174 4.174 12 C -0.073 4.073 13 N -0.251 5.251 14 C -0.074 4.074 15 C -0.094 4.094 16 C -0.133 4.133 17 C -0.149 4.149 18 C 0.048 3.952 19 O -0.397 6.397 20 C -0.179 4.179 21 C -0.145 4.145 22 C -0.060 4.060 23 H 0.077 0.923 24 H 0.219 0.781 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.243 0.757 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.560 -16.841 6.551 18.417 hybrid contribution 0.414 2.104 0.999 2.366 sum 3.974 -14.737 7.550 17.029 Atomic orbital electron populations 1.69843 1.06851 1.27997 1.50311 1.25708 0.95831 1.02295 0.93294 0.85485 0.78948 0.79318 0.77707 1.19490 1.20506 1.20365 1.21861 0.93489 0.92227 1.52388 0.92798 1.19800 0.87527 0.91440 0.81938 1.86138 1.51348 1.56398 1.45573 1.23043 1.00796 0.94339 0.99231 1.22722 0.94724 0.93466 0.96355 1.63506 1.08899 1.20199 1.32466 1.22410 0.96758 0.93964 0.94285 1.21093 0.98992 0.93377 0.95910 1.21324 1.00555 0.94171 0.97284 1.21475 0.99262 0.95641 0.98538 1.21826 0.94973 0.83657 0.94737 1.86482 1.55383 1.32011 1.65815 1.22167 1.01213 0.96774 0.97783 1.21474 0.99271 0.95309 0.98486 1.22808 0.94768 0.90093 0.98296 0.92273 0.78126 0.92686 0.93922 0.92187 0.92491 0.94918 0.90710 0.92355 0.91652 0.92250 0.91890 0.92719 0.91772 0.75727 0.92270 0.89724 0.90762 0.91270 0.93311 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.25 10.75 21.45 0.23 -49.02 16 2 C 0.03 1.57 5.29 84.66 0.45 2.01 16 3 Si 0.96 42.37 29.54 68.60 2.03 44.40 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.56 -30.52 8.27 25.60 0.21 -30.31 16 8 H 0.05 2.92 7.79 -2.91 -0.02 2.89 16 9 C 0.23 11.76 0.87 -10.15 -0.01 11.75 16 10 O -0.59 -31.59 13.16 -148.98 -1.96 -33.55 16 11 C -0.13 -6.32 5.37 31.78 0.17 -6.15 16 12 C 0.06 2.14 6.23 86.65 0.54 2.68 16 13 N -0.53 -19.72 4.59 -885.54 -4.06 -23.78 16 14 C 0.05 1.57 3.97 86.30 0.34 1.91 16 15 C -0.07 -1.81 2.23 -10.79 -0.02 -1.83 16 16 C -0.10 -2.35 5.09 30.60 0.16 -2.19 16 17 C -0.11 -2.52 5.57 30.59 0.17 -2.35 16 18 C 0.11 1.94 3.47 30.59 0.11 2.05 16 19 O -0.59 -10.92 13.32 -148.98 -1.98 -12.90 16 20 C -0.14 -2.30 5.54 30.58 0.17 -2.13 16 21 C -0.11 -1.94 5.20 30.58 0.16 -1.79 16 22 C 0.07 2.95 5.81 86.77 0.50 3.46 16 23 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 24 H 0.37 20.26 7.56 -74.06 -0.56 19.70 16 25 H 0.05 2.77 7.54 -2.39 -0.02 2.76 16 26 H 0.04 2.04 8.04 -2.39 -0.02 2.02 16 27 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.06 1.96 7.19 -2.39 -0.02 1.94 16 29 H 0.03 0.95 7.78 -2.39 -0.02 0.93 16 30 H 0.07 2.05 7.99 -2.39 -0.02 2.03 16 31 H 0.06 1.56 7.46 -2.39 -0.02 1.55 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.78 7.76 -2.39 -0.02 1.76 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.39 3.58 9.08 -74.06 -0.67 2.91 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.05 2.05 7.70 -2.38 -0.02 2.03 16 43 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -60.18 331.21 -3.05 -63.23 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: -0.25 Total: 34.52 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 2.94 Total: -22.89 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -3.83 Total: -72.80 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -3.95 Total: -46.46 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -60.18 -3.05 -63.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261640193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.949 kcal (2) G-P(sol) polarization free energy of solvation -60.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds