Wall clock time and date at job start Mon Mar 30 2020 01:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00265 * 2 1 4 4 H 1.48494 * 109.46805 * 270.00181 * 3 2 1 5 5 H 1.48492 * 109.46808 * 30.00363 * 3 2 1 6 6 H 1.48500 * 109.46953 * 150.00575 * 3 2 1 7 7 C 1.37879 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99840 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.27399 * 302.08913 * 9 7 2 11 11 C 1.54600 * 110.39123 * 64.23810 * 9 7 2 12 12 C 1.54933 * 102.92139 * 140.91683 * 11 9 7 13 13 N 1.48535 * 103.22793 * 322.58110 * 12 11 9 14 14 C 1.46902 * 110.99811 * 159.72030 * 13 12 11 15 15 C 1.52995 * 109.47035 * 58.33071 * 14 13 12 16 16 C 1.52994 * 109.47405 * 63.92815 * 15 14 13 17 17 C 1.53005 * 109.47405 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.46927 * 300.00556 * 17 16 15 19 19 O 1.42901 * 109.46846 * 299.99588 * 18 17 16 20 20 C 1.52994 * 109.47532 * 59.99522 * 18 17 16 21 21 C 1.52995 * 109.47016 * 183.93086 * 15 14 13 22 22 C 1.47903 * 105.81766 * 39.21117 * 13 12 11 23 23 H 0.97003 * 120.00037 * 359.97438 * 1 2 3 24 24 H 0.96700 * 113.99942 * 57.91111 * 10 9 7 25 25 H 1.09006 * 110.71914 * 259.27366 * 11 9 7 26 26 H 1.09000 * 110.72296 * 22.37591 * 11 9 7 27 27 H 1.08998 * 110.66395 * 204.14631 * 12 11 9 28 28 H 1.08997 * 110.66441 * 81.01875 * 12 11 9 29 29 H 1.09005 * 109.46930 * 298.32486 * 14 13 12 30 30 H 1.08997 * 109.46449 * 178.32433 * 14 13 12 31 31 H 1.09005 * 109.46913 * 303.92814 * 15 14 13 32 32 H 1.08996 * 109.47126 * 59.99866 * 16 15 14 33 33 H 1.09002 * 109.47324 * 299.99791 * 16 15 14 34 34 H 1.08994 * 109.47180 * 180.02562 * 17 16 15 35 35 H 1.09005 * 109.46918 * 59.99997 * 17 16 15 36 36 H 1.09000 * 109.46842 * 179.97438 * 18 17 16 37 37 H 0.96696 * 114.00299 * 180.02562 * 19 18 17 38 38 H 1.09005 * 109.47085 * 60.00086 * 20 18 17 39 39 H 1.08995 * 109.47578 * 180.02562 * 20 18 17 40 40 H 1.09003 * 109.47471 * 299.99951 * 21 15 14 41 41 H 1.09004 * 109.47477 * 59.99989 * 21 15 14 42 42 H 1.09000 * 109.91863 * 94.02181 * 22 13 12 43 43 H 1.08998 * 109.92017 * 215.12073 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.3870 -2.5722 1.1355 11 6 0.4356 -2.6505 -1.3053 12 6 0.5997 -4.1534 -1.6442 13 7 2.0037 -4.4388 -1.2522 14 6 2.2099 -5.8783 -1.0443 15 6 1.8598 -6.6342 -2.3276 16 6 2.8231 -6.2207 -3.4420 17 6 2.4726 -6.9762 -4.7255 18 6 2.5925 -8.4816 -4.4801 19 8 3.9317 -8.7959 -4.0930 20 6 1.6292 -8.8951 -3.3657 21 6 1.9802 -8.1395 -2.0818 22 6 2.2343 -3.6842 -0.0012 23 1 -0.4850 0.8401 0.0004 24 1 -0.2547 -1.8507 1.1886 25 1 -0.6130 -2.4056 -1.1355 26 1 0.8529 -2.0262 -2.0955 27 1 0.4556 -4.3251 -2.7108 28 1 -0.0936 -4.7575 -1.0590 29 1 1.5692 -6.2237 -0.2328 30 1 3.2530 -6.0624 -0.7873 31 1 0.8382 -6.3949 -2.6230 32 1 3.8446 -6.4600 -3.1465 33 1 2.7372 -5.1483 -3.6171 34 1 3.1591 -6.6819 -5.5193 35 1 1.4510 -6.7365 -5.0208 36 1 2.3424 -9.0198 -5.3944 37 1 4.0812 -9.7356 -3.9212 38 1 0.6077 -8.6554 -3.6610 39 1 1.7150 -9.9675 -3.1906 40 1 3.0018 -8.3789 -1.7863 41 1 1.2939 -8.4341 -1.2879 42 1 2.0439 -4.3253 0.8596 43 1 3.2608 -3.3187 0.0281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261640194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:09 Heat of formation + Delta-G solvation = -118.132820 kcal Electronic energy + Delta-G solvation = -21869.072270 eV Core-core repulsion = 18719.934488 eV Total energy + Delta-G solvation = -3149.137782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.49040 -38.12972 -35.75297 -34.22731 -32.02458 -31.14306 -30.74547 -28.73817 -27.87570 -25.11781 -23.70471 -22.59004 -21.46552 -20.18764 -19.43925 -19.09689 -17.04975 -16.92574 -15.81787 -15.23527 -14.94292 -14.73412 -14.65709 -13.88717 -13.72532 -13.46925 -13.29520 -12.69182 -12.54380 -12.24620 -12.00143 -11.97639 -11.68470 -11.48698 -11.21872 -11.12801 -10.98481 -10.82405 -10.54601 -10.50979 -10.42305 -10.23770 -10.13349 -9.93064 -9.84850 -9.65628 -9.08537 -8.54118 -8.04533 -7.66852 -6.15409 -4.21156 3.27149 3.33830 3.38279 4.16203 4.36029 4.54210 4.70995 4.79293 4.87295 5.11995 5.16807 5.31391 5.38934 5.46742 5.57730 5.58236 5.73446 5.81843 5.89131 5.93488 5.97786 6.03113 6.14783 6.18116 6.23275 6.29166 6.30980 6.39217 6.52717 6.56065 6.67144 6.75329 6.99761 7.13500 7.36649 7.55092 7.58070 7.74326 7.81260 7.92056 8.22226 8.80588 9.45938 9.58110 10.92275 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035968 B = 0.004166 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.273235 B = 6719.633582 C = 6968.018685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.243 3.757 10 O -0.596 6.596 11 C -0.118 4.118 12 C 0.033 3.967 13 N -0.511 5.511 14 C 0.053 3.947 15 C -0.082 4.082 16 C -0.101 4.101 17 C -0.114 4.114 18 C 0.105 3.895 19 O -0.561 6.561 20 C -0.149 4.149 21 C -0.110 4.110 22 C 0.054 3.946 23 H 0.266 0.734 24 H 0.383 0.617 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.371 0.629 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.033 0.967 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.859 -15.842 -7.504 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.203 3.797 10 O -0.406 6.406 11 C -0.157 4.157 12 C -0.095 4.095 13 N -0.235 5.235 14 C -0.076 4.076 15 C -0.101 4.101 16 C -0.138 4.138 17 C -0.151 4.151 18 C 0.046 3.954 19 O -0.366 6.366 20 C -0.187 4.187 21 C -0.148 4.148 22 C -0.073 4.073 23 H 0.076 0.924 24 H 0.234 0.766 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.217 0.783 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.502 -15.444 -7.853 17.506 hybrid contribution -0.655 0.481 0.552 0.982 sum 1.848 -14.963 -7.301 16.752 Atomic orbital electron populations 1.69623 1.05952 1.27323 1.51272 1.25010 0.94981 0.99420 0.93953 0.86465 0.79861 0.82752 0.78159 1.20550 1.21195 1.19807 1.21722 0.93554 0.90664 1.50547 0.91997 1.19354 0.86240 0.91576 0.82521 1.86083 1.52028 1.53880 1.48577 1.22969 1.00619 0.91693 1.00423 1.23258 0.88656 0.98644 0.98902 1.64797 1.22956 1.05633 1.30088 1.22287 1.00607 0.89159 0.95565 1.21161 0.99844 0.93493 0.95577 1.21370 0.99282 1.00363 0.92804 1.21589 1.01644 0.92669 0.99240 1.21800 0.81954 0.96754 0.94858 1.86567 1.28988 1.29877 1.91163 1.22228 1.00080 0.99610 0.96814 1.21477 1.01889 0.95045 0.96355 1.22847 1.00389 0.95043 0.89055 0.92411 0.76572 0.91927 0.91497 0.91833 0.95137 0.95507 0.91375 0.91468 0.91565 0.90553 0.91645 0.91026 0.93447 0.78281 0.91218 0.92182 0.91391 0.92490 0.94838 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.45 10.88 55.43 0.60 -23.85 16 2 C 0.07 1.82 5.26 -17.82 -0.09 1.73 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.45 8.11 -34.44 -0.28 -14.73 16 8 H 0.06 1.70 7.35 -52.49 -0.39 1.31 16 9 C 0.24 6.19 0.99 -90.41 -0.09 6.10 16 10 O -0.60 -15.95 12.93 -35.23 -0.46 -16.40 16 11 C -0.12 -2.80 5.50 -24.87 -0.14 -2.93 16 12 C 0.03 0.66 5.34 -1.90 -0.01 0.65 16 13 N -0.51 -10.04 4.76 -230.45 -1.10 -11.14 16 14 C 0.05 0.86 4.24 -3.83 -0.02 0.84 16 15 C -0.08 -1.12 1.99 -90.63 -0.18 -1.30 16 16 C -0.10 -1.38 4.94 -26.73 -0.13 -1.52 16 17 C -0.11 -1.30 5.66 -26.73 -0.15 -1.45 16 18 C 0.11 1.03 3.77 -26.73 -0.10 0.93 16 19 O -0.56 -5.83 11.97 -35.23 -0.42 -6.25 16 20 C -0.15 -1.39 5.64 -26.70 -0.15 -1.54 16 21 C -0.11 -1.24 5.06 -26.70 -0.14 -1.38 16 22 C 0.05 1.22 6.17 -2.75 -0.02 1.21 16 23 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 24 H 0.38 10.39 7.05 45.56 0.32 10.71 16 25 H 0.06 1.53 8.05 -51.93 -0.42 1.12 16 26 H 0.07 1.67 7.86 -51.93 -0.41 1.27 16 27 H 0.06 1.14 7.57 -51.93 -0.39 0.75 16 28 H 0.03 0.60 8.01 -51.93 -0.42 0.19 16 29 H 0.03 0.45 7.97 -51.93 -0.41 0.04 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.96 6.69 -51.93 -0.35 0.61 16 32 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 33 H 0.08 1.20 7.72 -51.93 -0.40 0.79 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.37 2.31 9.08 45.56 0.41 2.72 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.79 7.68 -51.93 -0.40 0.39 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.75 7.48 -51.93 -0.39 0.37 16 43 H 0.08 1.76 7.40 -51.93 -0.38 1.37 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -28.75 326.97 -9.07 -37.82 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.11 Total: 12.24 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -1.49 Total: -13.39 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: -0.49 Total: -34.98 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.88 Total: -22.65 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.75 -9.07 -37.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261640194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.314 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds