Wall clock time and date at job start Mon Mar 30 2020 01:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00265 * 2 1 4 4 H 1.48494 * 109.46805 * 270.00181 * 3 2 1 5 5 H 1.48492 * 109.46808 * 30.00363 * 3 2 1 6 6 H 1.48500 * 109.46953 * 150.00575 * 3 2 1 7 7 C 1.37879 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99840 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.27399 * 302.08913 * 9 7 2 11 11 C 1.54600 * 110.39123 * 64.23810 * 9 7 2 12 12 C 1.54933 * 102.92139 * 140.91683 * 11 9 7 13 13 N 1.48535 * 103.22793 * 322.58110 * 12 11 9 14 14 C 1.46902 * 110.99811 * 159.72030 * 13 12 11 15 15 C 1.52995 * 109.47035 * 58.33071 * 14 13 12 16 16 C 1.52994 * 109.47405 * 63.92815 * 15 14 13 17 17 C 1.53005 * 109.47405 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.46927 * 300.00556 * 17 16 15 19 19 O 1.42901 * 109.46846 * 299.99588 * 18 17 16 20 20 C 1.52994 * 109.47532 * 59.99522 * 18 17 16 21 21 C 1.52995 * 109.47016 * 183.93086 * 15 14 13 22 22 C 1.47903 * 105.81766 * 39.21117 * 13 12 11 23 23 H 0.97003 * 120.00037 * 359.97438 * 1 2 3 24 24 H 0.96700 * 113.99942 * 57.91111 * 10 9 7 25 25 H 1.09006 * 110.71914 * 259.27366 * 11 9 7 26 26 H 1.09000 * 110.72296 * 22.37591 * 11 9 7 27 27 H 1.08998 * 110.66395 * 204.14631 * 12 11 9 28 28 H 1.08997 * 110.66441 * 81.01875 * 12 11 9 29 29 H 1.09005 * 109.46930 * 298.32486 * 14 13 12 30 30 H 1.08997 * 109.46449 * 178.32433 * 14 13 12 31 31 H 1.09005 * 109.46913 * 303.92814 * 15 14 13 32 32 H 1.08996 * 109.47126 * 59.99866 * 16 15 14 33 33 H 1.09002 * 109.47324 * 299.99791 * 16 15 14 34 34 H 1.08994 * 109.47180 * 180.02562 * 17 16 15 35 35 H 1.09005 * 109.46918 * 59.99997 * 17 16 15 36 36 H 1.09000 * 109.46842 * 179.97438 * 18 17 16 37 37 H 0.96696 * 114.00299 * 180.02562 * 19 18 17 38 38 H 1.09005 * 109.47085 * 60.00086 * 20 18 17 39 39 H 1.08995 * 109.47578 * 180.02562 * 20 18 17 40 40 H 1.09003 * 109.47471 * 299.99951 * 21 15 14 41 41 H 1.09004 * 109.47477 * 59.99989 * 21 15 14 42 42 H 1.09000 * 109.91863 * 94.02181 * 22 13 12 43 43 H 1.08998 * 109.92017 * 215.12073 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.3870 -2.5722 1.1355 11 6 0.4356 -2.6505 -1.3053 12 6 0.5997 -4.1534 -1.6442 13 7 2.0037 -4.4388 -1.2522 14 6 2.2099 -5.8783 -1.0443 15 6 1.8598 -6.6342 -2.3276 16 6 2.8231 -6.2207 -3.4420 17 6 2.4726 -6.9762 -4.7255 18 6 2.5925 -8.4816 -4.4801 19 8 3.9317 -8.7959 -4.0930 20 6 1.6292 -8.8951 -3.3657 21 6 1.9802 -8.1395 -2.0818 22 6 2.2343 -3.6842 -0.0012 23 1 -0.4850 0.8401 0.0004 24 1 -0.2547 -1.8507 1.1886 25 1 -0.6130 -2.4056 -1.1355 26 1 0.8529 -2.0262 -2.0955 27 1 0.4556 -4.3251 -2.7108 28 1 -0.0936 -4.7575 -1.0590 29 1 1.5692 -6.2237 -0.2328 30 1 3.2530 -6.0624 -0.7873 31 1 0.8382 -6.3949 -2.6230 32 1 3.8446 -6.4600 -3.1465 33 1 2.7372 -5.1483 -3.6171 34 1 3.1591 -6.6819 -5.5193 35 1 1.4510 -6.7365 -5.0208 36 1 2.3424 -9.0198 -5.3944 37 1 4.0812 -9.7356 -3.9212 38 1 0.6077 -8.6554 -3.6610 39 1 1.7150 -9.9675 -3.1906 40 1 3.0018 -8.3789 -1.7863 41 1 1.2939 -8.4341 -1.2879 42 1 2.0439 -4.3253 0.8596 43 1 3.2608 -3.3187 0.0281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261640194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:08 Heat of formation + Delta-G solvation = -139.753027 kcal Electronic energy + Delta-G solvation = -21870.009792 eV Core-core repulsion = 18719.934488 eV Total energy + Delta-G solvation = -3150.075304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66281 -39.59316 -37.13531 -35.63701 -34.13224 -32.46010 -31.65296 -30.24868 -29.68811 -26.81654 -25.26362 -23.53035 -22.80562 -21.38927 -21.23473 -20.36008 -19.12063 -17.70883 -16.92845 -16.87339 -16.72976 -16.28408 -15.80992 -15.55286 -15.11114 -14.79167 -14.47015 -14.07592 -13.94880 -13.77883 -13.31054 -13.29016 -13.03456 -13.01182 -12.85993 -12.67248 -12.46659 -12.31780 -12.14308 -12.00652 -11.94838 -11.85423 -11.53221 -11.23088 -11.09968 -10.80935 -10.60566 -10.49563 -10.09601 -9.28428 -8.21687 -6.35380 1.40638 1.42115 1.52206 2.39432 2.98270 3.15249 3.46933 3.78547 3.87253 3.93374 3.97318 4.20700 4.23100 4.30003 4.39664 4.43812 4.51215 4.57092 4.60293 4.63098 4.69200 4.74055 4.83403 4.89412 4.98465 5.07865 5.12252 5.18380 5.23077 5.25973 5.32449 5.41176 5.42592 5.56414 5.60121 5.66814 5.77194 6.01145 6.15891 6.28097 6.68825 7.02892 7.34698 7.44757 8.84499 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035968 B = 0.004166 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.273235 B = 6719.633582 C = 6968.018685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.555 4.555 8 H 0.052 0.948 9 C 0.227 3.773 10 O -0.603 6.603 11 C -0.110 4.110 12 C 0.047 3.953 13 N -0.512 5.512 14 C 0.053 3.947 15 C -0.075 4.075 16 C -0.095 4.095 17 C -0.116 4.116 18 C 0.107 3.893 19 O -0.581 6.581 20 C -0.144 4.144 21 C -0.106 4.106 22 C 0.061 3.939 23 H 0.269 0.731 24 H 0.378 0.622 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.034 0.966 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.389 0.611 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.030 0.970 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 -17.311 -8.507 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.172 4.172 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.593 4.593 8 H 0.071 0.929 9 C 0.187 3.813 10 O -0.412 6.412 11 C -0.149 4.149 12 C -0.081 4.081 13 N -0.236 5.236 14 C -0.076 4.076 15 C -0.094 4.094 16 C -0.133 4.133 17 C -0.153 4.153 18 C 0.048 3.952 19 O -0.389 6.389 20 C -0.182 4.182 21 C -0.144 4.144 22 C -0.067 4.067 23 H 0.079 0.921 24 H 0.228 0.772 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.238 0.762 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.501 -16.945 -8.859 19.284 hybrid contribution -0.634 0.935 0.886 1.436 sum 1.867 -16.009 -7.973 17.982 Atomic orbital electron populations 1.69698 1.06810 1.28161 1.50912 1.25691 0.95851 1.02251 0.93374 0.85524 0.78614 0.79022 0.78249 1.20036 1.20441 1.19821 1.21961 0.93390 0.92198 1.51792 0.92944 1.19613 0.86738 0.92171 0.82778 1.86075 1.52098 1.53591 1.49485 1.22751 0.99098 0.94129 0.98957 1.23146 0.88803 0.95794 1.00327 1.64790 1.22769 1.07650 1.28401 1.22393 1.00746 0.87165 0.97257 1.21116 0.99472 0.94960 0.93830 1.21256 0.98563 0.99210 0.94248 1.21606 1.02094 0.93964 0.97639 1.21793 0.81945 0.95496 0.95959 1.86527 1.29310 1.31788 1.91290 1.22206 1.00106 1.00629 0.95232 1.21437 1.01898 0.93206 0.97863 1.22683 0.99183 0.94460 0.90380 0.92116 0.77183 0.93357 0.93463 0.89499 0.94743 0.95686 0.91200 0.91602 0.92977 0.93005 0.91952 0.90068 0.91370 0.76203 0.90666 0.89881 0.91751 0.92072 0.95121 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.09 10.88 21.45 0.23 -49.85 16 2 C 0.03 1.53 5.26 84.66 0.45 1.97 16 3 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.56 -31.07 8.11 25.60 0.21 -30.86 16 8 H 0.05 2.95 7.35 -2.91 -0.02 2.93 16 9 C 0.23 11.77 0.99 -10.66 -0.01 11.76 16 10 O -0.60 -32.90 12.93 -148.98 -1.93 -34.82 16 11 C -0.11 -5.30 5.50 31.80 0.17 -5.13 16 12 C 0.05 1.83 5.34 86.65 0.46 2.29 16 13 N -0.51 -20.03 4.76 -883.02 -4.20 -24.23 16 14 C 0.05 1.67 4.24 86.30 0.37 2.04 16 15 C -0.08 -1.93 1.99 -10.80 -0.02 -1.95 16 16 C -0.10 -2.52 4.94 30.59 0.15 -2.37 16 17 C -0.12 -2.42 5.66 30.60 0.17 -2.24 16 18 C 0.11 1.77 3.77 30.59 0.12 1.89 16 19 O -0.58 -10.63 11.97 -148.98 -1.78 -12.41 16 20 C -0.14 -2.18 5.64 30.61 0.17 -2.01 16 21 C -0.11 -2.14 5.06 30.61 0.15 -1.98 16 22 C 0.06 2.79 6.17 86.45 0.53 3.33 16 23 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 24 H 0.38 20.99 7.05 -74.06 -0.52 20.47 16 25 H 0.05 2.41 8.05 -2.38 -0.02 2.39 16 26 H 0.05 2.41 7.86 -2.39 -0.02 2.39 16 27 H 0.09 3.00 7.57 -2.39 -0.02 2.98 16 28 H 0.03 1.33 8.01 -2.39 -0.02 1.31 16 29 H 0.02 0.82 7.97 -2.38 -0.02 0.80 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 1.73 6.69 -2.38 -0.02 1.71 16 32 H 0.05 1.51 7.68 -2.39 -0.02 1.50 16 33 H 0.05 1.61 7.72 -2.39 -0.02 1.59 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 37 H 0.39 3.72 9.08 -74.06 -0.67 3.05 16 38 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 1.36 7.68 -2.39 -0.02 1.34 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 42 H 0.03 1.40 7.48 -2.39 -0.02 1.38 16 43 H 0.07 3.23 7.40 -2.39 -0.02 3.21 16 Total: -1.00 -61.49 326.97 -2.93 -64.42 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.20 Total: 34.80 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 2.92 Total: -23.27 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -3.97 Total: -74.08 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -3.71 Total: -47.23 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -61.49 -2.93 -64.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261640194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.332 kcal (2) G-P(sol) polarization free energy of solvation -61.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds