Wall clock time and date at job start Mon Mar 30 2020 00:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39385 * 119.50017 * 2 1 4 4 C 1.36086 * 120.98773 * 180.02562 * 3 2 1 5 5 C 1.40545 * 119.66062 * 359.97438 * 4 3 2 6 6 C 1.41748 * 119.34952 * 0.02562 * 5 4 3 7 7 C 1.40502 * 119.35763 * 180.02562 * 6 5 4 8 8 C 1.36120 * 119.65367 * 359.97438 * 7 6 5 9 9 C 1.39334 * 120.99084 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.50532 * 180.02562 * 9 8 7 11 11 C 1.36130 * 120.98752 * 0.02562 * 9 8 7 12 12 C 1.50701 * 120.17320 * 180.02562 * 11 9 8 13 13 N 1.46496 * 109.47298 * 89.76047 * 12 11 9 14 14 C 1.46495 * 120.00180 * 270.00574 * 13 12 11 15 15 C 1.36940 * 119.99720 * 89.99779 * 13 12 11 16 16 H 1.07996 * 119.99931 * 23.38780 * 15 13 12 17 17 C 1.38813 * 119.99843 * 203.38367 * 15 13 12 18 18 N 1.31620 * 119.99865 * 13.06935 * 17 15 13 19 19 Si 1.86800 * 119.99804 * 193.07110 * 17 15 13 20 20 H 1.48495 * 109.47245 * 89.99872 * 19 17 15 21 21 H 1.48497 * 109.46897 * 210.00094 * 19 17 15 22 22 H 1.48504 * 109.47167 * 329.99673 * 19 17 15 23 23 C 1.36084 * 119.50491 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47893 * 89.99608 * 1 2 3 25 25 H 1.09006 * 109.47447 * 209.99628 * 1 2 3 26 26 H 1.09000 * 109.47543 * 329.99293 * 1 2 3 27 27 H 1.07996 * 119.50567 * 0.02562 * 3 2 1 28 28 H 1.08008 * 120.17003 * 179.97438 * 4 3 2 29 29 H 1.08005 * 120.17477 * 180.27378 * 7 6 5 30 30 H 1.08002 * 119.51220 * 179.97438 * 8 7 6 31 31 H 1.09003 * 109.47197 * 95.29638 * 10 9 8 32 32 H 1.09004 * 109.46801 * 215.29236 * 10 9 8 33 33 H 1.08996 * 109.47333 * 335.29027 * 10 9 8 34 34 H 1.08997 * 109.46779 * 209.76535 * 12 11 9 35 35 H 1.09000 * 109.47022 * 329.76176 * 12 11 9 36 36 H 1.09001 * 109.47771 * 91.88641 * 14 13 12 37 37 H 1.09005 * 109.47178 * 211.88526 * 14 13 12 38 38 H 1.09006 * 109.47220 * 331.87901 * 14 13 12 39 39 H 0.97009 * 119.99326 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.17121 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1933 1.2131 0.0000 4 6 3.5537 1.2485 -0.0005 5 6 4.2807 0.0456 -0.0005 6 6 3.5826 -1.1880 -0.0005 7 6 4.3092 -2.3906 0.0000 8 6 5.6700 -2.3553 0.0000 9 6 6.3562 -1.1426 -0.0011 10 6 7.8632 -1.1426 -0.0016 11 6 5.6857 0.0421 -0.0016 12 6 6.4464 1.3430 -0.0033 13 7 6.6969 1.7604 -1.3851 14 6 7.9172 1.3286 -2.0709 15 6 5.7902 2.5541 -2.0355 16 1 5.1114 3.1744 -1.4692 17 6 5.7436 2.5614 -3.4229 18 7 6.3773 1.6329 -4.1074 19 14 4.7817 3.8890 -4.3181 20 1 5.6709 5.0469 -4.5894 21 1 4.2682 3.3476 -5.6020 22 1 3.6410 4.3279 -3.4745 23 6 2.1772 -1.1844 0.0005 24 1 -0.3635 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6372 2.1389 0.0004 28 1 4.0721 2.1960 -0.0009 29 1 3.7908 -3.3381 -0.0044 30 1 6.2262 -3.2811 0.0009 31 1 8.2262 -1.0484 -1.0251 32 1 8.2267 -0.3034 0.5915 33 1 8.2267 -2.0759 0.4285 34 1 5.8601 2.1073 0.5066 35 1 7.3966 1.2089 0.5136 36 1 7.7224 0.4015 -2.6101 37 1 8.2304 2.0994 -2.7752 38 1 8.7070 1.1637 -1.3380 39 1 6.3444 1.6379 -5.0770 40 1 1.6319 -2.1166 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307453131.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:06 Heat of formation + Delta-G solvation = 41.400623 kcal Electronic energy + Delta-G solvation = -20765.975241 eV Core-core repulsion = 17931.064268 eV Total energy + Delta-G solvation = -2834.910973 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38458 -38.44338 -37.15291 -34.35705 -33.56909 -32.67789 -30.59568 -29.65516 -27.90140 -27.37383 -25.91090 -24.17419 -23.47349 -22.07189 -21.10018 -18.79172 -17.94146 -17.41406 -16.90095 -16.71582 -15.75496 -15.45222 -15.09892 -14.80279 -14.67197 -14.66021 -14.50871 -14.01170 -13.68425 -13.50879 -13.34375 -13.07440 -12.91216 -12.88719 -12.80084 -12.53008 -12.35818 -12.19816 -11.93694 -11.81511 -11.53580 -11.51363 -11.45784 -10.61246 -10.46539 -9.18101 -8.79181 -8.46542 -7.83398 -5.27608 -0.20410 0.24226 1.28893 1.42971 1.43660 1.51343 2.17471 2.50202 3.26530 3.34179 3.80836 3.88667 3.97716 4.09399 4.12405 4.23397 4.31353 4.44235 4.49026 4.60616 4.66475 4.76248 4.82931 4.85956 4.87427 4.91073 4.99599 5.02012 5.12051 5.19203 5.31640 5.33716 5.38414 5.48323 5.58330 5.64584 5.72745 5.74005 5.79497 5.98900 6.15285 6.31206 6.33945 7.15309 7.85756 8.30513 9.20328 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.008977 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.791377 B = 3118.389116 C = 4573.710587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.100 4.100 5 C -0.063 4.063 6 C -0.074 4.074 7 C -0.130 4.130 8 C -0.114 4.114 9 C -0.107 4.107 10 C -0.107 4.107 11 C -0.090 4.090 12 C 0.177 3.823 13 N -0.599 5.599 14 C 0.182 3.818 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.051 4.051 18 N -0.934 5.934 19 Si 0.957 3.043 20 H -0.284 1.284 21 H -0.300 1.300 22 H -0.268 1.268 23 C -0.125 4.125 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.132 0.868 28 H 0.117 0.883 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.074 0.926 36 H -0.002 1.002 37 H 0.018 0.982 38 H 0.033 0.967 39 H 0.245 0.755 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.806 -6.610 10.700 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.094 4.094 3 C -0.157 4.157 4 C -0.118 4.118 5 C -0.063 4.063 6 C -0.074 4.074 7 C -0.148 4.148 8 C -0.132 4.132 9 C -0.108 4.108 10 C -0.163 4.163 11 C -0.093 4.093 12 C 0.051 3.949 13 N -0.320 5.320 14 C 0.037 3.963 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.786 3.214 20 H -0.211 1.211 21 H -0.227 1.227 22 H -0.192 1.192 23 C -0.143 4.143 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.150 0.850 28 H 0.135 0.865 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.016 0.984 37 H 0.037 0.963 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.759 -6.574 10.529 13.684 hybrid contribution -0.282 0.739 -1.213 1.448 sum -6.041 -5.835 9.316 12.543 Atomic orbital electron populations 1.20821 0.88828 1.03858 1.02806 1.19936 0.97825 0.92521 0.99143 1.20951 0.93933 0.98608 1.02178 1.21217 0.94904 0.97464 0.98187 1.18204 0.93586 0.93601 1.00908 1.18423 0.94590 0.93222 1.01143 1.21163 0.94419 0.97182 1.02081 1.21000 0.94693 0.97664 0.99852 1.19708 0.97235 0.92674 1.01180 1.20861 0.90401 1.03179 1.01839 1.20792 0.93139 0.97661 0.97709 1.20084 0.97402 0.90860 0.86515 1.44227 1.20106 1.56683 1.11002 1.20570 0.85572 0.96912 0.93215 1.19448 1.13743 1.15145 0.89157 0.91124 1.25714 1.01089 0.99853 0.97917 1.70235 1.48063 1.34325 1.05464 0.85405 0.78876 0.79237 0.77901 1.21095 1.22663 1.19242 1.21071 0.92166 0.98806 1.02275 0.90947 0.89953 0.90607 0.85041 0.86533 0.83411 0.83937 0.92570 0.91156 0.89857 0.92983 0.90846 0.98392 0.96348 0.94831 0.94576 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 9.98 71.23 0.71 -1.52 16 2 C -0.09 -2.84 5.84 -20.09 -0.12 -2.96 16 3 C -0.14 -4.76 9.58 22.05 0.21 -4.55 16 4 C -0.10 -4.02 8.91 22.33 0.20 -3.82 16 5 C -0.06 -2.60 5.74 -21.30 -0.12 -2.72 16 6 C -0.07 -2.71 5.74 -21.30 -0.12 -2.83 16 7 C -0.13 -4.16 9.77 22.33 0.22 -3.95 16 8 C -0.11 -3.68 9.56 22.04 0.21 -3.47 16 9 C -0.11 -3.92 5.84 -20.09 -0.12 -4.04 16 10 C -0.11 -3.30 8.64 71.24 0.62 -2.68 16 11 C -0.09 -3.72 5.47 -19.80 -0.11 -3.83 16 12 C 0.18 7.40 4.97 85.63 0.43 7.83 16 13 N -0.60 -30.02 2.90 -731.32 -2.12 -32.14 16 14 C 0.18 9.00 7.67 127.77 0.98 9.98 16 15 C -0.24 -13.39 8.92 84.03 0.75 -12.64 16 16 H 0.07 3.76 6.73 -2.91 -0.02 3.74 16 17 C -0.05 -2.88 5.07 84.86 0.43 -2.45 16 18 N -0.93 -56.44 10.76 21.65 0.23 -56.20 16 19 Si 0.96 46.07 29.57 68.60 2.03 48.09 16 20 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 C -0.13 -3.89 9.37 22.33 0.21 -3.68 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.08 1.39 8.07 -2.38 -0.02 1.37 16 26 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 27 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 28 H 0.12 4.89 4.84 -2.91 -0.01 4.87 16 29 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 30 H 0.14 3.59 8.05 -2.91 -0.02 3.57 16 31 H 0.06 1.95 6.65 -2.39 -0.02 1.94 16 32 H 0.07 2.07 6.09 -2.38 -0.01 2.05 16 33 H 0.08 2.02 8.03 -2.39 -0.02 2.00 16 34 H 0.05 2.14 6.31 -2.39 -0.02 2.13 16 35 H 0.07 2.71 5.70 -2.39 -0.01 2.69 16 36 H 0.00 -0.12 7.09 -2.39 -0.02 -0.14 16 37 H 0.02 0.97 7.15 -2.38 -0.02 0.95 16 38 H 0.03 1.39 7.41 -2.38 -0.02 1.37 16 39 H 0.24 14.51 8.31 -92.70 -0.77 13.74 16 40 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -67.31 316.48 5.55 -61.76 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.03 Total: 15.81 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 4.37 Total: -37.32 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -1.89 Total: -88.35 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -67.31 5.55 -61.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307453131.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.164 kcal (2) G-P(sol) polarization free energy of solvation -67.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds