Wall clock time and date at job start Mon Mar 30 2020 01:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48493 * 109.47439 * 269.99913 * 3 2 1 5 5 H 1.48503 * 109.47033 * 30.00236 * 3 2 1 6 6 H 1.48505 * 109.47118 * 149.99953 * 3 2 1 7 7 C 1.37876 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00242 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00274 * 179.97438 * 7 2 1 10 10 O 1.42900 * 109.47382 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99976 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47050 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47377 * 67.42510 * 12 11 10 14 14 C 1.46978 * 110.99735 * 287.24452 * 13 12 11 15 15 C 1.52997 * 109.53542 * 176.59995 * 14 13 12 16 16 C 1.53093 * 109.50594 * 60.89482 * 15 14 13 17 17 H 1.08992 * 109.59720 * 60.60246 * 16 15 14 18 18 O 1.42904 * 109.53062 * 180.79045 * 16 15 14 19 19 C 1.53255 * 109.10231 * 300.67385 * 16 15 14 20 20 C 1.46551 * 111.00336 * 163.29879 * 13 12 11 21 21 C 1.53438 * 113.52822 * 50.83680 * 20 13 12 22 22 C 1.53848 * 86.97650 * 220.09321 * 21 20 13 23 23 C 1.53420 * 113.58485 * 312.97438 * 20 13 12 24 24 H 0.96993 * 119.99857 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47022 * 60.00206 * 9 7 2 26 26 H 1.08998 * 109.47547 * 300.00739 * 9 7 2 27 27 H 1.08992 * 109.47141 * 60.00434 * 11 10 9 28 28 H 1.08999 * 109.46962 * 300.00058 * 11 10 9 29 29 H 1.09000 * 109.46819 * 307.42612 * 12 11 10 30 30 H 1.08998 * 109.46962 * 187.42126 * 12 11 10 31 31 H 1.08996 * 109.45968 * 296.61299 * 14 13 12 32 32 H 1.08990 * 109.46264 * 56.57767 * 14 13 12 33 33 H 1.08997 * 109.46370 * 300.87904 * 15 14 13 34 34 H 1.09003 * 109.45284 * 180.89707 * 15 14 13 35 35 H 0.96702 * 114.00266 * 299.61836 * 18 16 15 36 36 H 1.09000 * 109.54281 * 295.71248 * 19 16 15 37 37 H 1.08992 * 109.54733 * 175.45217 * 19 16 15 38 38 H 1.08992 * 113.63323 * 334.61437 * 21 20 13 39 39 H 1.08995 * 113.62931 * 105.57768 * 21 20 13 40 40 H 1.09006 * 113.60307 * 270.61269 * 22 21 20 41 41 H 1.08998 * 113.67774 * 139.75231 * 22 21 20 42 42 H 1.08993 * 113.62766 * 254.38418 * 23 20 13 43 43 H 1.09003 * 113.62690 * 25.33254 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9879 -2.5413 0.0013 11 6 5.4125 -2.6541 0.0014 12 6 5.8070 -4.1324 0.0022 13 7 5.4197 -4.7433 -1.2763 14 6 3.9624 -4.9171 -1.3569 15 6 3.5891 -5.4757 -2.7315 16 6 4.2573 -6.8390 -2.9279 17 1 3.9105 -7.5302 -2.1598 18 8 3.9239 -7.3530 -4.2189 19 6 5.7770 -6.6730 -2.8194 20 6 6.1126 -6.0185 -1.4804 21 6 5.9972 -6.9761 -0.2872 22 6 7.4719 -7.3359 -0.5377 23 6 7.6181 -5.9518 -1.1931 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.6796 0.8895 26 1 3.8746 -0.6807 -0.8904 27 1 5.8151 -2.1698 0.8909 28 1 5.8152 -2.1714 -0.8890 29 1 5.2972 -4.6440 0.8186 30 1 6.8853 -4.2205 0.1351 31 1 3.6361 -5.6108 -0.5822 32 1 3.4733 -3.9541 -1.2113 33 1 3.9290 -4.7894 -3.5070 34 1 2.5069 -5.5891 -2.7955 35 1 2.9757 -7.4833 -4.3576 36 1 6.1338 -6.0419 -3.6334 37 1 6.2557 -7.6504 -2.8775 38 1 5.8262 -6.4711 0.6634 39 1 5.3103 -7.8052 -0.4571 40 1 7.6069 -8.1645 -1.2330 41 1 8.0558 -7.4504 0.3755 42 1 8.2350 -5.9568 -2.0916 43 1 7.8948 -5.1638 -0.4926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307857441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:25 Heat of formation + Delta-G solvation = -68.863391 kcal Electronic energy + Delta-G solvation = -21951.530008 eV Core-core repulsion = 18804.528709 eV Total energy + Delta-G solvation = -3147.001299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86552 -37.26700 -37.10913 -34.88714 -32.81477 -32.21346 -29.17376 -28.76373 -27.21501 -25.90446 -23.65070 -23.22603 -21.83496 -21.35498 -20.48950 -18.01740 -17.07756 -16.86871 -16.75222 -15.79097 -15.35297 -14.94787 -14.82242 -14.47976 -14.37369 -13.89005 -13.57969 -13.04182 -12.88773 -12.67263 -12.54203 -12.19717 -11.96607 -11.73466 -11.45533 -11.32155 -11.16074 -11.03639 -10.85701 -10.76406 -10.63326 -10.55524 -10.37810 -9.91509 -9.86561 -9.67714 -9.17663 -8.80490 -8.44708 -7.97115 -6.13259 -4.12260 3.24387 3.31407 3.32819 3.93898 4.07602 4.34604 4.46619 4.52579 4.67566 4.69807 4.86884 4.96505 5.14125 5.17251 5.18862 5.25813 5.47849 5.51336 5.59963 5.66513 5.72615 5.77369 5.78286 5.85039 5.87212 5.90884 5.99162 6.01869 6.11096 6.17027 6.22801 6.34936 6.49592 6.59902 6.81537 7.00685 7.35206 7.42116 7.59730 7.61101 8.00224 8.64619 8.96871 9.46475 10.99707 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024182 B = 0.004775 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.606631 B = 5862.295047 C = 6632.713619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.168 3.832 10 O -0.378 6.378 11 C 0.062 3.938 12 C 0.053 3.947 13 N -0.517 5.517 14 C 0.049 3.951 15 C -0.148 4.148 16 C 0.103 3.897 17 H 0.050 0.950 18 O -0.571 6.571 19 C -0.079 4.079 20 C 0.096 3.904 21 C -0.175 4.175 22 C -0.138 4.138 23 C -0.135 4.135 24 H 0.266 0.734 25 H 0.001 0.999 26 H -0.001 1.001 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.028 0.972 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.377 0.623 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.822 -13.819 -2.879 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.099 0.901 9 C 0.093 3.907 10 O -0.297 6.297 11 C -0.016 4.016 12 C -0.074 4.074 13 N -0.240 5.240 14 C -0.077 4.077 15 C -0.186 4.186 16 C 0.045 3.955 17 H 0.068 0.932 18 O -0.377 6.377 19 C -0.117 4.117 20 C 0.005 3.995 21 C -0.214 4.214 22 C -0.176 4.176 23 C -0.172 4.172 24 H 0.076 0.924 25 H 0.019 0.981 26 H 0.017 0.983 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.142 0.858 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.224 0.776 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.306 -13.484 -3.331 19.939 hybrid contribution -0.374 0.619 0.798 1.077 sum 13.932 -12.865 -2.533 19.132 Atomic orbital electron populations 1.69872 1.06070 1.27091 1.50398 1.24758 0.94776 0.98758 0.94609 0.86855 0.80327 0.83796 0.78798 1.19911 1.20849 1.19135 1.20875 0.88279 0.95202 1.51222 0.90070 1.20592 0.96063 0.79742 0.94339 1.87835 1.17844 1.29265 1.94771 1.22368 0.84776 0.95035 0.99426 1.22306 1.00149 0.94498 0.90445 1.61867 1.07431 1.21964 1.32727 1.22407 0.87052 1.03813 0.94471 1.22298 1.00198 0.96828 0.99238 1.21891 0.95486 0.93922 0.84240 0.93227 1.86459 1.29416 1.87191 1.34628 1.21178 0.94147 1.00389 0.95942 1.22093 0.94628 0.88920 0.93844 1.23638 0.97158 1.00470 1.00180 1.22755 0.96718 0.97353 1.00768 1.23217 0.95442 0.97397 1.01156 0.92384 0.98101 0.98320 0.94064 0.93372 0.93874 0.89588 0.95417 0.85801 0.90386 0.91315 0.77565 0.90237 0.91075 0.89711 0.91651 0.90244 0.91498 0.91052 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -15.08 9.99 -34.44 -0.34 -15.43 16 8 H 0.08 2.57 8.06 -52.48 -0.42 2.15 16 9 C 0.17 4.18 4.76 36.01 0.17 4.35 16 10 O -0.38 -8.37 7.32 -35.23 -0.26 -8.63 16 11 C 0.06 1.07 6.22 37.16 0.23 1.30 16 12 C 0.05 0.77 4.47 -3.82 -0.02 0.75 16 13 N -0.52 -7.57 4.61 -218.80 -1.01 -8.58 16 14 C 0.05 0.80 5.01 -3.78 -0.02 0.78 16 15 C -0.15 -2.10 5.67 -26.68 -0.15 -2.25 16 16 C 0.10 1.28 3.44 -26.55 -0.09 1.19 16 17 H 0.05 0.60 7.48 -51.93 -0.39 0.21 16 18 O -0.57 -6.91 13.33 -35.23 -0.47 -7.38 16 19 C -0.08 -0.95 4.80 -26.72 -0.13 -1.08 16 20 C 0.10 1.15 0.93 -131.46 -0.12 1.03 16 21 C -0.18 -1.92 6.43 -26.06 -0.17 -2.09 16 22 C -0.14 -1.26 7.73 -25.85 -0.20 -1.46 16 23 C -0.13 -1.37 7.08 -26.08 -0.18 -1.56 16 24 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.00 0.03 7.20 -51.93 -0.37 -0.34 16 26 H 0.00 -0.02 7.57 -51.93 -0.39 -0.42 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.64 6.85 -51.93 -0.36 0.29 16 30 H 0.09 1.02 5.18 -51.93 -0.27 0.75 16 31 H 0.03 0.45 7.76 -51.93 -0.40 0.04 16 32 H 0.12 2.49 5.22 -51.93 -0.27 2.22 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.38 3.11 9.09 45.56 0.41 3.53 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.78 7.30 -51.93 -0.38 0.40 16 38 H 0.08 0.99 6.22 -51.93 -0.32 0.66 16 39 H 0.06 0.72 7.43 -51.93 -0.39 0.33 16 40 H 0.08 0.67 7.60 -51.93 -0.39 0.28 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 43 H 0.09 0.91 5.47 -51.93 -0.28 0.63 16 LS Contribution 323.10 15.07 4.87 4.87 Total: -1.00 -31.35 323.10 -8.23 -39.58 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.35 Total: 2.53 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -1.12 Total: -12.44 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.23 Total: -35.19 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.73 Total: -16.01 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.35 -8.23 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307857441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.281 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds