Wall clock time and date at job start Mon Mar 30 2020 01:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48493 * 109.47439 * 269.99913 * 3 2 1 5 5 H 1.48503 * 109.47033 * 30.00236 * 3 2 1 6 6 H 1.48505 * 109.47118 * 149.99953 * 3 2 1 7 7 C 1.37876 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00242 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00274 * 179.97438 * 7 2 1 10 10 O 1.42900 * 109.47382 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99976 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47050 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47377 * 67.42510 * 12 11 10 14 14 C 1.46978 * 110.99735 * 287.24452 * 13 12 11 15 15 C 1.52997 * 109.53542 * 176.59995 * 14 13 12 16 16 C 1.53093 * 109.50594 * 60.89482 * 15 14 13 17 17 H 1.08992 * 109.59720 * 60.60246 * 16 15 14 18 18 O 1.42904 * 109.53062 * 180.79045 * 16 15 14 19 19 C 1.53255 * 109.10231 * 300.67385 * 16 15 14 20 20 C 1.46551 * 111.00336 * 163.29879 * 13 12 11 21 21 C 1.53438 * 113.52822 * 50.83680 * 20 13 12 22 22 C 1.53848 * 86.97650 * 220.09321 * 21 20 13 23 23 C 1.53420 * 113.58485 * 312.97438 * 20 13 12 24 24 H 0.96993 * 119.99857 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47022 * 60.00206 * 9 7 2 26 26 H 1.08998 * 109.47547 * 300.00739 * 9 7 2 27 27 H 1.08992 * 109.47141 * 60.00434 * 11 10 9 28 28 H 1.08999 * 109.46962 * 300.00058 * 11 10 9 29 29 H 1.09000 * 109.46819 * 307.42612 * 12 11 10 30 30 H 1.08998 * 109.46962 * 187.42126 * 12 11 10 31 31 H 1.08996 * 109.45968 * 296.61299 * 14 13 12 32 32 H 1.08990 * 109.46264 * 56.57767 * 14 13 12 33 33 H 1.08997 * 109.46370 * 300.87904 * 15 14 13 34 34 H 1.09003 * 109.45284 * 180.89707 * 15 14 13 35 35 H 0.96702 * 114.00266 * 299.61836 * 18 16 15 36 36 H 1.09000 * 109.54281 * 295.71248 * 19 16 15 37 37 H 1.08992 * 109.54733 * 175.45217 * 19 16 15 38 38 H 1.08992 * 113.63323 * 334.61437 * 21 20 13 39 39 H 1.08995 * 113.62931 * 105.57768 * 21 20 13 40 40 H 1.09006 * 113.60307 * 270.61269 * 22 21 20 41 41 H 1.08998 * 113.67774 * 139.75231 * 22 21 20 42 42 H 1.08993 * 113.62766 * 254.38418 * 23 20 13 43 43 H 1.09003 * 113.62690 * 25.33254 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9879 -2.5413 0.0013 11 6 5.4125 -2.6541 0.0014 12 6 5.8070 -4.1324 0.0022 13 7 5.4197 -4.7433 -1.2763 14 6 3.9624 -4.9171 -1.3569 15 6 3.5891 -5.4757 -2.7315 16 6 4.2573 -6.8390 -2.9279 17 1 3.9105 -7.5302 -2.1598 18 8 3.9239 -7.3530 -4.2189 19 6 5.7770 -6.6730 -2.8194 20 6 6.1126 -6.0185 -1.4804 21 6 5.9972 -6.9761 -0.2872 22 6 7.4719 -7.3359 -0.5377 23 6 7.6181 -5.9518 -1.1931 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.6796 0.8895 26 1 3.8746 -0.6807 -0.8904 27 1 5.8151 -2.1698 0.8909 28 1 5.8152 -2.1714 -0.8890 29 1 5.2972 -4.6440 0.8186 30 1 6.8853 -4.2205 0.1351 31 1 3.6361 -5.6108 -0.5822 32 1 3.4733 -3.9541 -1.2113 33 1 3.9290 -4.7894 -3.5070 34 1 2.5069 -5.5891 -2.7955 35 1 2.9757 -7.4833 -4.3576 36 1 6.1338 -6.0419 -3.6334 37 1 6.2557 -7.6504 -2.8775 38 1 5.8262 -6.4711 0.6634 39 1 5.3103 -7.8052 -0.4571 40 1 7.6069 -8.1645 -1.2330 41 1 8.0558 -7.4504 0.3755 42 1 8.2350 -5.9568 -2.0916 43 1 7.8948 -5.1638 -0.4926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307857441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:24 Heat of formation + Delta-G solvation = -92.535050 kcal Electronic energy + Delta-G solvation = -21952.556488 eV Core-core repulsion = 18804.528709 eV Total energy + Delta-G solvation = -3148.027779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.84938 -38.75632 -38.18842 -36.08132 -34.85025 -33.51055 -30.59927 -30.10066 -28.83211 -26.74037 -24.85194 -24.20577 -23.87031 -22.56524 -21.52624 -19.11999 -18.93417 -18.00681 -17.87863 -17.38390 -16.62500 -16.48808 -16.09338 -15.78468 -15.52493 -15.20424 -14.84735 -14.63971 -14.16935 -13.91152 -13.72898 -13.61176 -13.31862 -13.05503 -12.74560 -12.71131 -12.41910 -12.35990 -12.11015 -11.97857 -11.90302 -11.81105 -11.61398 -11.39996 -11.22898 -10.94150 -10.86357 -10.75007 -10.19771 -9.11448 -8.37253 -6.44296 1.32961 1.35219 1.45946 2.28908 2.85284 2.95906 3.08395 3.17777 3.55284 3.70847 3.83550 3.90664 3.99054 4.07760 4.12949 4.24940 4.36333 4.46085 4.48949 4.50508 4.61039 4.62429 4.72518 4.78562 4.87602 4.90209 4.94756 4.97023 5.01425 5.02740 5.11513 5.14892 5.23952 5.31538 5.37022 5.50080 5.52399 5.94195 6.17119 6.31517 6.59398 6.76268 6.81191 7.20314 8.79677 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024182 B = 0.004775 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.606631 B = 5862.295047 C = 6632.713619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.539 4.539 8 H 0.032 0.968 9 C 0.179 3.821 10 O -0.395 6.395 11 C 0.053 3.947 12 C 0.059 3.941 13 N -0.526 5.526 14 C 0.057 3.943 15 C -0.143 4.143 16 C 0.111 3.889 17 H 0.057 0.943 18 O -0.580 6.580 19 C -0.077 4.077 20 C 0.086 3.914 21 C -0.176 4.176 22 C -0.124 4.124 23 C -0.131 4.131 24 H 0.272 0.728 25 H 0.010 0.990 26 H 0.006 0.994 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.119 0.881 31 H 0.022 0.978 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.393 0.607 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.698 -13.954 -2.854 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.170 1.170 7 C -0.577 4.577 8 H 0.050 0.950 9 C 0.103 3.897 10 O -0.315 6.315 11 C -0.024 4.024 12 C -0.068 4.068 13 N -0.249 5.249 14 C -0.071 4.071 15 C -0.182 4.182 16 C 0.052 3.948 17 H 0.075 0.925 18 O -0.388 6.388 19 C -0.115 4.115 20 C -0.004 4.004 21 C -0.216 4.216 22 C -0.162 4.162 23 C -0.168 4.168 24 H 0.081 0.919 25 H 0.027 0.973 26 H 0.023 0.977 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.137 0.863 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.243 0.757 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.192 -13.650 -3.310 22.200 hybrid contribution -1.337 0.546 0.763 1.633 sum 15.855 -13.104 -2.546 20.726 Atomic orbital electron populations 1.70025 1.08193 1.28669 1.51307 1.25785 0.95728 1.03246 0.93583 0.85651 0.79475 0.77840 0.79642 1.18669 1.19898 1.16981 1.21133 0.90864 0.93744 1.51963 0.95003 1.20279 0.93263 0.81429 0.94717 1.87865 1.21130 1.27558 1.94927 1.22703 0.82008 0.97439 1.00253 1.22323 1.01865 0.92417 0.90166 1.61840 1.06290 1.23950 1.32847 1.22138 0.88305 1.01283 0.95377 1.22247 1.00488 0.97891 0.97532 1.21783 0.95786 0.92530 0.84687 0.92476 1.86428 1.31135 1.86910 1.34319 1.21190 0.93720 1.01014 0.95540 1.22295 0.95847 0.87921 0.94339 1.23617 0.98833 1.00038 0.99089 1.22723 0.94984 0.96997 1.01477 1.23225 0.93630 0.98244 1.01694 0.91885 0.97254 0.97664 0.92337 0.93235 0.94601 0.86317 0.95993 0.90123 0.91981 0.91302 0.75748 0.91370 0.89324 0.90526 0.91765 0.89069 0.90123 0.90213 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.30 13.96 21.45 0.30 -59.00 16 2 C 0.01 0.86 5.47 84.65 0.46 1.32 16 3 Si 0.95 43.64 27.47 68.60 1.88 45.52 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 7 C -0.54 -32.64 9.99 25.60 0.26 -32.38 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 9 C 0.18 8.95 4.76 71.24 0.34 9.29 16 10 O -0.39 -17.90 7.32 -148.98 -1.09 -18.99 16 11 C 0.05 1.78 6.22 71.98 0.45 2.23 16 12 C 0.06 1.64 4.47 86.30 0.39 2.03 16 13 N -0.53 -15.14 4.61 -846.14 -3.90 -19.04 16 14 C 0.06 1.90 5.01 86.29 0.43 2.33 16 15 C -0.14 -4.20 5.67 30.62 0.17 -4.02 16 16 C 0.11 2.66 3.44 30.71 0.11 2.77 16 17 H 0.06 1.30 7.48 -2.39 -0.02 1.28 16 18 O -0.58 -13.32 13.33 -148.98 -1.99 -15.31 16 19 C -0.08 -1.73 4.80 30.60 0.15 -1.58 16 20 C 0.09 1.91 0.93 3.81 0.00 1.92 16 21 C -0.18 -3.51 6.43 31.03 0.20 -3.31 16 22 C -0.12 -1.84 7.73 31.16 0.24 -1.60 16 23 C -0.13 -2.26 7.08 31.02 0.22 -2.04 16 24 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 25 H 0.01 0.47 7.20 -2.38 -0.02 0.45 16 26 H 0.01 0.27 7.57 -2.39 -0.02 0.26 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.05 6.85 -2.39 -0.02 1.03 16 30 H 0.12 2.49 5.18 -2.39 -0.01 2.48 16 31 H 0.02 0.74 7.76 -2.39 -0.02 0.72 16 32 H 0.08 3.46 5.22 -2.39 -0.01 3.45 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.39 6.08 9.09 -74.06 -0.67 5.40 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 1.69 7.30 -2.39 -0.02 1.67 16 38 H 0.08 1.66 6.22 -2.39 -0.01 1.65 16 39 H 0.06 1.29 7.43 -2.39 -0.02 1.27 16 40 H 0.09 1.18 7.60 -2.38 -0.02 1.16 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 43 H 0.09 1.56 5.47 -2.39 -0.01 1.55 16 Total: -1.00 -69.99 323.10 -1.11 -71.10 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.27 Total: 18.76 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 3.41 Total: -23.05 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -3.60 Total: -78.04 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -3.08 Total: -34.29 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Total: -69.99 -1.11 -71.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307857441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.433 kcal (2) G-P(sol) polarization free energy of solvation -69.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds