Wall clock time and date at job start Mon Mar 30 2020 01:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99602 * 2 1 4 4 H 1.48501 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46859 * 299.99909 * 3 2 1 6 6 H 1.48497 * 109.47673 * 59.99641 * 3 2 1 7 7 C 1.37873 * 120.00408 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99879 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47362 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00367 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47138 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47100 * 65.00071 * 12 11 10 14 14 C 1.46968 * 111.00352 * 65.07704 * 13 12 11 15 15 C 1.52998 * 109.53483 * 183.41191 * 14 13 12 16 16 C 1.53090 * 109.50767 * 299.10347 * 15 14 13 17 17 H 1.08997 * 109.53388 * 299.34170 * 16 15 14 18 18 O 1.42908 * 109.53248 * 179.19619 * 16 15 14 19 19 C 1.53255 * 109.11127 * 59.31027 * 16 15 14 20 20 C 1.46565 * 111.00044 * 189.00841 * 13 12 11 21 21 C 1.53410 * 113.58480 * 46.99431 * 20 13 12 22 22 C 1.53846 * 86.98650 * 220.15617 * 21 20 13 23 23 C 1.53444 * 113.52026 * 309.13316 * 20 13 12 24 24 H 0.97003 * 120.00215 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47474 * 59.99372 * 9 7 2 26 26 H 1.09004 * 109.47221 * 299.99941 * 9 7 2 27 27 H 1.08997 * 109.47136 * 59.99696 * 11 10 9 28 28 H 1.08998 * 109.47207 * 299.99524 * 11 10 9 29 29 H 1.08999 * 109.47389 * 304.99471 * 12 11 10 30 30 H 1.09007 * 109.47360 * 185.00189 * 12 11 10 31 31 H 1.09007 * 109.46233 * 303.43274 * 14 13 12 32 32 H 1.09005 * 109.46243 * 63.40175 * 14 13 12 33 33 H 1.08993 * 109.46550 * 59.11714 * 15 14 13 34 34 H 1.09000 * 109.46472 * 179.09676 * 15 14 13 35 35 H 0.96699 * 113.99614 * 59.99543 * 18 16 15 36 36 H 1.09001 * 109.54261 * 64.29567 * 19 16 15 37 37 H 1.08993 * 109.54208 * 184.47453 * 19 16 15 38 38 H 1.09004 * 113.63594 * 334.68035 * 21 20 13 39 39 H 1.09000 * 113.62762 * 105.63484 * 21 20 13 40 40 H 1.08994 * 113.60816 * 270.61237 * 22 21 20 41 41 H 1.09004 * 113.60617 * 139.73624 * 22 21 20 42 42 H 1.08998 * 113.62816 * 254.42902 * 23 20 13 43 43 H 1.08995 * 113.63166 * 25.29520 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.5653 -4.8753 0.0000 12 6 2.6484 -5.9560 -0.0006 13 7 3.4085 -5.8882 1.2546 14 6 2.5562 -6.2198 2.4051 15 6 3.3567 -6.0565 3.6986 16 6 4.5533 -7.0113 3.6833 17 1 4.1982 -8.0396 3.6155 18 8 5.3120 -6.8460 4.8830 19 6 5.4351 -6.6912 2.4714 20 6 4.5848 -6.7610 1.2041 21 6 5.4000 -6.6182 -0.0876 22 6 5.5675 -8.1472 -0.0549 23 6 4.2648 -8.1951 0.7620 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 0.9455 -4.9821 -0.8902 28 1 0.9450 -4.9827 0.8897 29 1 3.3218 -5.7951 -0.8425 30 1 2.1824 -6.9374 -0.0907 31 1 1.6953 -5.5514 2.4239 32 1 2.2134 -7.2509 2.3180 33 1 3.7126 -5.0294 3.7784 34 1 2.7190 -6.2872 4.5520 35 1 4.8135 -7.0270 5.6916 36 1 5.8503 -5.6889 2.5771 37 1 6.2458 -7.4170 2.4085 38 1 4.8160 -6.2608 -0.9358 39 1 6.3350 -6.0735 0.0438 40 1 6.4441 -8.4785 0.5017 41 1 5.4853 -8.6164 -1.0353 42 1 4.2864 -8.9186 1.5770 43 1 3.3662 -8.2734 0.1501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307857442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:27 Heat of formation + Delta-G solvation = -71.560462 kcal Electronic energy + Delta-G solvation = -21789.977146 eV Core-core repulsion = 18642.858893 eV Total energy + Delta-G solvation = -3147.118253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.88135 -37.32581 -36.80825 -35.03741 -32.83262 -32.18661 -29.19581 -28.47934 -26.61190 -25.86821 -24.00324 -23.22143 -22.24956 -21.04221 -20.66530 -18.05129 -17.11131 -16.74952 -16.34698 -15.69606 -15.32491 -15.04017 -14.63127 -14.39946 -14.25623 -14.08238 -13.57698 -13.17500 -12.90841 -12.85457 -12.58695 -11.83742 -11.78280 -11.56373 -11.48068 -11.39127 -11.11495 -10.99359 -10.79712 -10.71156 -10.66335 -10.46669 -10.37688 -10.02261 -9.88395 -9.76433 -9.01637 -8.74493 -8.09058 -7.93854 -6.05922 -4.06487 3.32758 3.39131 3.46527 3.88990 4.02728 4.39871 4.47120 4.57832 4.71461 4.73740 4.88784 4.90928 5.03091 5.14546 5.24030 5.30806 5.43084 5.47555 5.52397 5.61547 5.68173 5.74976 5.77807 5.78740 5.83389 5.93590 5.99343 6.04853 6.06424 6.18994 6.20939 6.32315 6.37207 6.40525 7.15617 7.32156 7.34355 7.49079 7.52642 7.86659 8.22656 8.67833 9.08958 9.58401 11.05850 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.004475 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.559626 B = 6254.823320 C = 6638.921277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.378 6.378 11 C 0.066 3.934 12 C 0.055 3.945 13 N -0.506 5.506 14 C 0.058 3.942 15 C -0.149 4.149 16 C 0.106 3.894 17 H 0.049 0.951 18 O -0.568 6.568 19 C -0.081 4.081 20 C 0.099 3.901 21 C -0.132 4.132 22 C -0.138 4.138 23 C -0.177 4.177 24 H 0.262 0.738 25 H 0.001 0.999 26 H 0.002 0.998 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.028 0.972 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.376 0.624 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.285 -18.650 4.651 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.546 4.546 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.297 6.297 11 C -0.012 4.012 12 C -0.072 4.072 13 N -0.229 5.229 14 C -0.069 4.069 15 C -0.187 4.187 16 C 0.047 3.953 17 H 0.067 0.933 18 O -0.373 6.373 19 C -0.119 4.119 20 C 0.009 3.991 21 C -0.170 4.170 22 C -0.176 4.176 23 C -0.216 4.216 24 H 0.072 0.928 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.046 0.954 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.222 0.778 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.955 -17.832 4.282 19.990 hybrid contribution -0.921 -0.101 0.299 0.974 sum 7.033 -17.933 4.582 19.800 Atomic orbital electron populations 1.69978 1.06102 1.26905 1.51088 1.24942 0.94943 0.99391 0.95300 0.86308 0.80122 0.82703 0.77536 1.19444 1.20928 1.20901 1.21105 0.94131 0.89333 1.50066 0.91471 1.20170 0.88862 0.83992 0.95016 1.87958 1.34547 1.12256 1.94987 1.22275 0.93844 0.86377 0.98735 1.22303 0.96140 0.95981 0.92755 1.61715 1.06962 1.51768 1.02431 1.22018 0.96248 0.98680 0.89991 1.22287 0.96959 1.02173 0.97279 1.21844 0.91322 0.96983 0.85110 0.93277 1.86511 1.41913 1.93010 1.15892 1.21209 0.96770 1.03554 0.90386 1.22066 0.92134 0.89991 0.94918 1.23197 1.00525 0.95743 0.97515 1.22755 0.97610 0.97006 1.00214 1.23649 0.98631 0.98897 1.00460 0.92832 0.98087 0.98014 0.94391 0.94670 0.89372 0.94241 0.89780 0.95391 0.89662 0.91588 0.77757 0.89829 0.90909 0.88770 0.90869 0.90256 0.91468 0.91790 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.26 29.54 -169.99 -5.02 17.24 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -15.27 9.43 -34.44 -0.32 -15.60 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.19 5.43 5.69 36.00 0.20 5.63 16 10 O -0.38 -9.29 10.27 -35.23 -0.36 -9.65 16 11 C 0.07 1.23 5.98 37.16 0.22 1.45 16 12 C 0.06 0.83 4.47 -3.83 -0.02 0.82 16 13 N -0.51 -7.62 4.61 -218.79 -1.01 -8.63 16 14 C 0.06 0.79 5.15 -3.79 -0.02 0.77 16 15 C -0.15 -1.84 5.67 -26.69 -0.15 -1.99 16 16 C 0.11 1.21 3.44 -26.55 -0.09 1.11 16 17 H 0.05 0.51 7.48 -51.93 -0.39 0.12 16 18 O -0.57 -6.41 13.33 -35.23 -0.47 -6.88 16 19 C -0.08 -1.00 4.80 -26.72 -0.13 -1.13 16 20 C 0.10 1.24 0.93 -131.46 -0.12 1.12 16 21 C -0.13 -1.58 7.08 -26.08 -0.18 -1.76 16 22 C -0.14 -1.33 7.73 -25.85 -0.20 -1.53 16 23 C -0.18 -1.85 6.43 -26.06 -0.17 -2.02 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 26 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.64 6.24 -51.93 -0.32 0.32 16 29 H 0.09 1.34 5.47 -51.93 -0.28 1.06 16 30 H 0.04 0.50 6.48 -51.93 -0.34 0.17 16 31 H 0.08 1.27 6.19 -51.92 -0.32 0.95 16 32 H 0.03 0.34 7.75 -51.93 -0.40 -0.07 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.38 2.62 9.08 45.56 0.41 3.03 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.07 0.81 7.31 -51.93 -0.38 0.43 16 38 H 0.09 1.19 5.54 -51.93 -0.29 0.91 16 39 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.08 0.70 7.61 -51.93 -0.39 0.31 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.63 7.43 -51.93 -0.39 0.24 16 43 H 0.08 0.89 6.03 -51.93 -0.31 0.57 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -32.85 328.43 -8.58 -41.44 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.33 Total: -0.24 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -1.08 Total: -11.60 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.27 Total: -35.25 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.83 Total: -16.53 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.85 -8.58 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307857442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.125 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds