Wall clock time and date at job start Mon Mar 30 2020 01:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00284 * 2 1 4 4 H 1.48497 * 109.47353 * 240.00799 * 3 2 1 5 5 H 1.48501 * 109.46933 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47018 * 120.00510 * 3 2 1 7 7 C 1.37878 * 119.99615 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99712 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00444 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46888 * 300.00371 * 9 7 2 11 11 O 1.42905 * 109.46835 * 60.00027 * 9 7 2 12 12 C 1.53000 * 109.47332 * 180.02562 * 9 7 2 13 13 N 1.46893 * 109.47197 * 179.73226 * 12 9 7 14 14 C 1.46863 * 111.00121 * 294.79145 * 13 12 9 15 15 C 1.53032 * 109.51700 * 174.23963 * 14 13 12 16 16 C 1.53096 * 109.31164 * 59.18604 * 15 14 13 17 17 C 1.53129 * 109.13619 * 302.31877 * 16 15 14 18 18 C 1.46787 * 111.00254 * 170.59206 * 13 12 9 19 19 C 1.53150 * 109.50407 * 65.75235 * 18 13 12 20 20 C 1.53183 * 109.01245 * 182.99287 * 19 18 13 21 21 C 1.53091 * 109.15158 * 56.94836 * 20 19 18 22 22 O 1.42897 * 109.45222 * 302.39680 * 21 20 19 23 23 C 1.42913 * 114.09282 * 61.13599 * 22 21 20 24 24 H 0.96996 * 119.99807 * 359.97438 * 1 2 3 25 25 H 0.96699 * 113.99661 * 60.00560 * 11 9 7 26 26 H 1.08997 * 109.47001 * 59.72724 * 12 9 7 27 27 H 1.09006 * 109.46822 * 299.73374 * 12 9 7 28 28 H 1.08996 * 109.45899 * 294.25587 * 14 13 12 29 29 H 1.09008 * 109.45817 * 54.22928 * 14 13 12 30 30 H 1.09002 * 109.49939 * 179.11921 * 15 14 13 31 31 H 1.08998 * 109.50251 * 299.22192 * 15 14 13 32 32 H 1.08999 * 109.52612 * 182.42493 * 16 15 14 33 33 H 1.09005 * 109.58430 * 62.25222 * 16 15 14 34 34 H 1.08993 * 109.50843 * 297.69173 * 17 16 15 35 35 H 1.09003 * 109.50394 * 177.56084 * 17 16 15 36 36 H 1.09008 * 109.53968 * 302.85155 * 19 18 13 37 37 H 1.09002 * 109.54665 * 63.03404 * 19 18 13 38 38 H 1.09004 * 109.52280 * 176.85099 * 20 19 18 39 39 H 1.08998 * 109.52401 * 296.97691 * 20 19 18 40 40 H 1.08997 * 109.47420 * 62.39383 * 21 20 19 41 41 H 1.09005 * 109.47031 * 182.40046 * 21 20 19 42 42 H 1.09005 * 109.48625 * 178.92206 * 23 22 21 43 43 H 1.08997 * 109.48840 * 58.87992 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 0.4290 -2.5746 -1.1671 12 6 2.2452 -3.6622 -0.0005 13 7 1.5107 -4.9343 0.0059 14 6 0.7541 -5.0989 1.2539 15 6 -0.1081 -6.3601 1.1664 16 6 0.7938 -7.5747 0.9312 17 6 1.6055 -7.3567 -0.3488 18 6 2.4176 -6.0666 -0.2178 19 6 3.3827 -6.1902 0.9649 20 6 4.3711 -7.3267 0.6858 21 6 5.0983 -7.0475 -0.6321 22 8 4.1412 -6.9127 -1.6845 23 6 3.2197 -5.8359 -1.5007 24 1 -0.4850 0.8400 0.0004 25 1 0.9209 -2.5291 -1.9984 26 1 2.8750 -3.6017 0.8870 27 1 2.8687 -3.6071 -0.8930 28 1 1.4477 -5.1902 2.0897 29 1 0.1131 -4.2306 1.4071 30 1 -0.6577 -6.4905 2.0987 31 1 -0.8115 -6.2635 0.3394 32 1 0.1800 -8.4692 0.8254 33 1 1.4715 -7.6957 1.7763 34 1 0.9291 -7.2761 -1.1995 35 1 2.2815 -8.1986 -0.4988 36 1 3.9282 -5.2547 1.0897 37 1 2.8206 -6.4086 1.8729 38 1 5.0969 -7.3857 1.4969 39 1 3.8301 -8.2700 0.6117 40 1 5.6720 -6.1250 -0.5423 41 1 5.7723 -7.8740 -0.8574 42 1 2.5396 -5.7901 -2.3514 43 1 3.7682 -4.8972 -1.4227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308172336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:00 Heat of formation + Delta-G solvation = -96.648561 kcal Electronic energy + Delta-G solvation = -22777.621366 eV Core-core repulsion = 19629.415211 eV Total energy + Delta-G solvation = -3148.206154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62966 -37.50508 -35.64621 -32.99521 -32.82630 -32.05059 -31.13704 -28.22438 -26.71382 -25.18286 -24.89407 -23.27165 -22.17212 -20.65917 -20.16514 -17.90889 -17.14969 -16.31531 -15.94027 -15.29707 -14.99903 -14.71129 -14.55980 -14.25441 -13.96866 -13.74017 -13.56486 -12.98609 -12.67394 -12.58981 -12.45343 -12.32483 -11.78578 -11.64248 -11.28188 -11.04141 -10.95900 -10.88386 -10.79542 -10.70146 -10.50272 -10.32499 -10.09914 -9.94679 -9.83127 -9.22408 -8.87588 -8.54402 -8.06989 -7.55263 -5.99750 -4.18240 3.28372 3.34029 3.35347 3.89472 4.32339 4.46425 4.81524 4.85621 4.94064 5.00306 5.11184 5.20264 5.28021 5.34323 5.44404 5.45801 5.62157 5.73163 5.76799 5.79349 5.84315 5.92352 5.99730 6.02817 6.11785 6.17010 6.20035 6.22980 6.26473 6.37341 6.45619 6.54146 6.57918 6.72658 6.84816 7.23906 7.59847 7.69448 7.79664 7.90211 8.21463 8.85486 9.47483 9.64034 11.04256 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023521 B = 0.005822 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.121283 B = 4807.988750 C = 5442.472628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.575 4.575 8 H 0.052 0.948 9 C 0.238 3.762 10 H 0.054 0.946 11 O -0.553 6.553 12 C 0.023 3.977 13 N -0.509 5.509 14 C 0.055 3.945 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.098 4.098 18 C 0.083 3.917 19 C -0.154 4.154 20 C -0.150 4.150 21 C 0.059 3.941 22 O -0.381 6.381 23 C 0.070 3.930 24 H 0.261 0.739 25 H 0.342 0.658 26 H 0.026 0.974 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.062 -14.894 1.385 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.614 4.614 8 H 0.071 0.929 9 C 0.180 3.820 10 H 0.071 0.929 11 O -0.355 6.355 12 C -0.104 4.104 13 N -0.233 5.233 14 C -0.073 4.073 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.136 4.136 18 C -0.008 4.008 19 C -0.193 4.193 20 C -0.189 4.189 21 C -0.018 4.018 22 O -0.299 6.299 23 C -0.007 4.007 24 H 0.071 0.929 25 H 0.185 0.815 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.056 -14.937 1.294 15.822 hybrid contribution 1.661 1.272 0.749 2.222 sum 6.717 -13.665 2.043 15.363 Atomic orbital electron populations 1.70068 1.05881 1.26488 1.46912 1.25008 0.94668 0.98996 0.93868 0.86758 0.79746 0.83338 0.78640 1.20138 1.21170 1.20280 1.21622 0.93037 0.91713 1.55021 0.92927 1.19305 0.87740 0.88415 0.86501 0.92868 1.86565 1.37671 1.96294 1.14925 1.23207 0.97606 0.90014 0.99555 1.62092 1.25322 1.00919 1.35016 1.22095 0.96488 0.98660 0.90058 1.21565 0.98051 0.94080 1.01583 1.21613 0.98315 0.97944 0.97889 1.21517 0.98161 0.95807 0.98102 1.21563 0.91792 0.92919 0.94503 1.22336 0.98019 0.98756 1.00204 1.22178 0.99017 0.99686 0.97987 1.22540 0.90927 1.01016 0.87296 1.87913 1.44784 1.52874 1.44338 1.22752 0.91122 0.89061 0.97772 0.92945 0.81537 0.95586 0.91480 0.95581 0.89660 0.92275 0.91026 0.92441 0.92568 0.91280 0.91564 0.91722 0.90999 0.91519 0.90953 0.93438 0.89308 0.88047 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.31 12.84 55.43 0.71 -24.60 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.58 -15.65 8.76 -34.44 -0.30 -15.95 16 8 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.24 5.94 2.69 -27.88 -0.08 5.86 16 10 H 0.05 1.47 6.40 -51.93 -0.33 1.13 16 11 O -0.55 -14.25 12.60 -35.23 -0.44 -14.70 16 12 C 0.02 0.47 3.75 -3.83 -0.01 0.46 16 13 N -0.51 -8.95 4.32 -218.95 -0.95 -9.90 16 14 C 0.05 0.93 4.99 -3.83 -0.02 0.91 16 15 C -0.11 -1.63 6.09 -26.66 -0.16 -1.80 16 16 C -0.12 -1.50 5.69 -26.62 -0.15 -1.65 16 17 C -0.10 -1.32 4.49 -26.66 -0.12 -1.44 16 18 C 0.08 1.22 0.43 -131.56 -0.06 1.16 16 19 C -0.15 -2.09 3.83 -26.56 -0.10 -2.19 16 20 C -0.15 -1.68 5.77 -26.59 -0.15 -1.84 16 21 C 0.06 0.68 6.84 37.20 0.25 0.94 16 22 O -0.38 -5.38 10.20 -35.23 -0.36 -5.74 16 23 C 0.07 1.04 5.22 37.18 0.19 1.23 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.34 7.95 9.04 45.56 0.41 8.37 16 26 H 0.03 0.53 6.86 -51.93 -0.36 0.17 16 27 H 0.07 1.32 5.64 -51.93 -0.29 1.03 16 28 H 0.03 0.43 6.27 -51.93 -0.33 0.10 16 29 H 0.09 1.68 6.19 -51.92 -0.32 1.36 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.68 6.49 -51.93 -0.34 0.34 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.84 6.10 -51.93 -0.32 0.53 16 36 H 0.06 0.97 6.63 -51.92 -0.34 0.62 16 37 H 0.07 0.98 4.83 -51.93 -0.25 0.73 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.79 6.59 -51.93 -0.34 0.45 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.06 0.89 6.00 -51.93 -0.31 0.58 16 LS Contribution 313.02 15.07 4.72 4.72 Total: -1.00 -29.58 313.02 -8.19 -37.77 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.04 Total: 8.51 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.80 Total: -12.15 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.23 Total: -34.50 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.80 Total: -20.44 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.58 -8.19 -37.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308172336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.883 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds