Wall clock time and date at job start Mon Mar 30 2020 00:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46956 * 176.58038 * 3 2 1 5 5 C 1.36938 * 119.99957 * 273.34317 * 4 3 2 6 6 H 1.08002 * 119.99754 * 325.88050 * 5 4 3 7 7 C 1.38813 * 120.00537 * 145.88661 * 5 4 3 8 8 N 1.31619 * 119.99515 * 336.49135 * 7 5 4 9 9 Si 1.86796 * 120.00016 * 156.48913 * 7 5 4 10 10 H 1.48498 * 109.47116 * 84.98959 * 9 7 5 11 11 H 1.48507 * 109.46825 * 204.98467 * 9 7 5 12 12 H 1.48496 * 109.47459 * 324.98537 * 9 7 5 13 13 C 1.46496 * 120.00222 * 93.33962 * 4 3 2 14 14 C 1.53002 * 109.47098 * 89.99776 * 13 4 3 15 15 C 1.52995 * 115.54882 * 325.72204 * 14 13 4 16 16 C 1.52995 * 117.49476 * 111.39281 * 14 13 4 17 17 C 1.53001 * 117.49751 * 180.02562 * 14 13 4 18 18 H 1.09001 * 117.49873 * 0.02562 * 17 14 13 19 19 C 1.50694 * 117.50019 * 145.02147 * 17 14 13 20 20 C 1.38237 * 119.99612 * 59.72454 * 19 17 14 21 21 C 1.38243 * 119.99873 * 179.79053 * 20 19 17 22 22 C 1.38238 * 119.99818 * 0.46338 * 21 20 19 23 23 C 1.38240 * 120.00044 * 359.76831 * 22 21 20 24 24 C 1.38235 * 120.00345 * 240.00181 * 19 17 14 25 25 H 4.40641 * 5.51380 * 179.97438 * 4 1 2 26 26 H 1.08993 * 109.47160 * 296.57698 * 3 2 1 27 27 H 1.09001 * 109.47122 * 56.58484 * 3 2 1 28 28 H 0.97004 * 119.99510 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47067 * 210.00228 * 13 4 3 30 30 H 1.09000 * 109.46817 * 329.99790 * 13 4 3 31 31 H 1.09004 * 109.47359 * 34.41738 * 15 14 13 32 32 H 1.09000 * 109.46924 * 154.41750 * 15 14 13 33 33 H 1.08999 * 109.47461 * 274.41462 * 15 14 13 34 34 H 1.09005 * 117.49762 * 214.97401 * 16 14 13 35 35 H 1.09004 * 117.50438 * 359.97438 * 16 14 13 36 36 H 1.07995 * 120.00246 * 0.02562 * 20 19 17 37 37 H 1.07997 * 120.00113 * 180.25726 * 21 20 19 38 38 H 1.07993 * 120.00243 * 179.78936 * 22 21 20 39 39 H 1.07997 * 119.99872 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.99626 * 359.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3797 -0.0824 5 6 3.2965 1.9765 -1.3041 6 1 3.6100 1.3892 -2.1545 7 6 3.0586 3.3364 -1.4495 8 7 2.2640 3.9594 -0.6052 9 14 3.8661 4.2819 -2.8434 10 1 3.0430 4.1510 -4.0724 11 1 3.9752 5.7154 -2.4711 12 1 5.2221 3.7313 -3.0948 13 6 3.4472 2.1202 1.1421 14 6 4.9143 1.8944 1.5132 15 6 5.4719 0.5079 1.1855 16 6 5.8657 3.0861 1.3890 17 6 5.4395 2.5881 2.7717 18 1 4.7397 3.2050 3.3356 19 6 6.4667 1.8535 3.5940 20 6 7.6742 1.4902 3.0274 21 6 8.6183 0.8201 3.7829 22 6 8.3510 0.5049 5.1021 23 6 7.1416 0.8640 5.6672 24 6 6.1993 1.5379 4.9130 25 1 -1.0502 -0.0004 -0.0002 26 1 3.0096 -0.4589 0.9190 27 1 3.0096 -0.5651 -0.8578 28 1 2.0981 4.9097 -0.7066 29 1 3.2734 3.1837 0.9782 30 1 2.8091 1.7685 1.9528 31 1 5.0130 0.1391 0.2682 32 1 6.5516 0.5731 1.0508 33 1 5.2486 -0.1764 2.0040 34 1 6.8893 2.8822 1.0743 35 1 5.4467 4.0308 1.0426 36 1 7.8815 1.7331 1.9958 37 1 9.5633 0.5399 3.3416 38 1 9.0871 -0.0216 5.6913 39 1 6.9327 0.6174 6.6976 40 1 5.2543 1.8182 5.3543 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308964299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:48 Heat of formation + Delta-G solvation = 115.657419 kcal Electronic energy + Delta-G solvation = -20214.460776 eV Core-core repulsion = 17382.769820 eV Total energy + Delta-G solvation = -2831.690956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81704 -38.83669 -36.93740 -34.23238 -32.73860 -31.80640 -31.42095 -29.12532 -28.23899 -27.56480 -24.64243 -23.76737 -23.08175 -21.32906 -19.91448 -19.07278 -18.42298 -17.63579 -16.75533 -16.25887 -16.04529 -15.64048 -15.47395 -15.35799 -14.82274 -14.47408 -14.20536 -14.06390 -13.78365 -13.49054 -13.12190 -12.95024 -12.89137 -12.72648 -12.39150 -12.28745 -12.12720 -12.04948 -11.74352 -11.54374 -11.18780 -11.03933 -10.78839 -10.69020 -10.28493 -9.72663 -9.29669 -8.67003 -7.83919 -5.41240 0.50813 0.58298 1.44902 1.48313 1.56628 2.07213 2.15305 2.55057 2.77347 3.25083 3.28685 3.64572 3.89636 3.92048 4.02408 4.08424 4.22294 4.23883 4.35118 4.44388 4.57314 4.69692 4.77476 4.80944 4.87586 4.91077 4.96830 5.09568 5.12304 5.23034 5.25150 5.29821 5.31188 5.50156 5.57213 5.67997 5.69505 5.70948 5.83794 5.86873 6.20846 6.44698 6.98198 7.15710 7.82298 8.34473 9.13915 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018814 B = 0.005685 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.875435 B = 4924.430661 C = 5782.561934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.207 4.207 3 C 0.233 3.767 4 N -0.576 5.576 5 C -0.260 4.260 6 H 0.062 0.938 7 C -0.029 4.029 8 N -0.915 5.915 9 Si 0.949 3.051 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.269 1.269 13 C 0.181 3.819 14 C -0.108 4.108 15 C -0.098 4.098 16 C -0.165 4.165 17 C -0.116 4.116 18 H 0.099 0.901 19 C -0.048 4.048 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.133 4.133 23 C -0.121 4.121 24 C -0.132 4.132 25 H 0.234 0.766 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.250 0.750 29 H 0.073 0.927 30 H 0.018 0.982 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.408 -6.667 10.194 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.210 4.210 3 C 0.108 3.892 4 N -0.294 5.294 5 C -0.390 4.390 6 H 0.079 0.921 7 C -0.227 4.227 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.213 1.213 11 H -0.220 1.220 12 H -0.194 1.194 13 C 0.055 3.945 14 C -0.110 4.110 15 C -0.155 4.155 16 C -0.202 4.202 17 C -0.134 4.134 18 H 0.117 0.883 19 C -0.048 4.048 20 C -0.148 4.148 21 C -0.141 4.141 22 C -0.151 4.151 23 C -0.139 4.139 24 C -0.150 4.150 25 H 0.251 0.749 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.389 -6.503 10.185 15.936 hybrid contribution -0.494 1.103 -0.884 1.497 sum 9.895 -5.400 9.301 14.615 Atomic orbital electron populations 1.25511 0.96832 1.02197 1.02705 1.25716 0.97362 0.99007 0.98932 1.18455 0.81701 0.88139 1.00930 1.44000 1.72226 1.10572 1.02603 1.19243 1.38592 0.92129 0.89037 0.92076 1.25663 0.97749 0.99430 0.99834 1.70137 1.35720 1.09538 1.40508 0.85587 0.79334 0.77677 0.79642 1.21326 1.21957 1.19417 1.20431 0.89461 0.99070 0.85572 1.22295 0.96649 0.94228 0.97861 1.21224 0.99577 0.93485 1.01192 1.23097 0.99867 0.98545 0.98665 1.21197 1.00157 1.02948 0.89147 0.88300 1.19182 0.93938 0.97701 0.93987 1.21204 0.93704 0.99658 1.00267 1.21393 0.99551 0.98384 0.94762 1.21442 0.97652 1.00536 0.95438 1.21391 0.93803 0.98114 1.00615 1.21152 1.00194 1.00035 0.93652 0.74946 0.89809 0.90738 0.94104 0.90976 0.96364 0.91762 0.92622 0.93205 0.88124 0.91050 0.86226 0.84244 0.83725 0.83982 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.19 19.25 74.32 1.43 -8.75 16 2 C -0.21 -9.16 13.66 31.13 0.43 -8.73 16 3 C 0.23 9.77 4.60 84.57 0.39 10.15 16 4 N -0.58 -27.77 1.57 -712.55 -1.12 -28.89 16 5 C -0.26 -13.84 9.47 84.03 0.80 -13.04 16 6 H 0.06 3.23 7.93 -2.91 -0.02 3.21 16 7 C -0.03 -1.60 4.93 84.86 0.42 -1.18 16 8 N -0.92 -53.02 11.36 21.65 0.25 -52.77 16 9 Si 0.95 44.18 29.61 68.60 2.03 46.21 16 10 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.18 8.40 5.44 86.38 0.47 8.88 16 14 C -0.11 -4.11 2.57 -52.18 -0.13 -4.25 16 15 C -0.10 -3.33 7.69 71.98 0.55 -2.77 16 16 C -0.16 -6.04 9.16 30.60 0.28 -5.76 16 17 C -0.12 -3.89 5.76 -11.53 -0.07 -3.95 16 18 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 19 C -0.05 -1.39 5.05 -19.87 -0.10 -1.49 16 20 C -0.13 -3.43 7.77 22.27 0.17 -3.26 16 21 C -0.12 -2.65 10.05 22.27 0.22 -2.42 16 22 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 23 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 24 C -0.13 -3.39 9.74 22.27 0.22 -3.17 16 25 H 0.23 7.22 7.80 -4.41 -0.03 7.18 16 26 H 0.08 3.11 7.29 -2.39 -0.02 3.09 16 27 H 0.07 2.95 8.07 -2.39 -0.02 2.93 16 28 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.07 3.88 5.10 -2.39 -0.01 3.87 16 30 H 0.02 0.85 8.07 -2.39 -0.02 0.83 16 31 H 0.06 2.36 5.61 -2.39 -0.01 2.35 16 32 H 0.05 1.72 5.88 -2.39 -0.01 1.71 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 3.30 6.09 -2.38 -0.01 3.29 16 35 H 0.07 2.92 8.05 -2.38 -0.02 2.90 16 36 H 0.12 3.16 5.15 -2.91 -0.02 3.14 16 37 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 40 H 0.12 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -62.47 330.99 7.70 -54.77 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 1.02 Total: 25.09 kcal Atomic # 6 Polarization: -49.94 SS G_CDS: 5.52 Total: -44.41 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -0.88 Total: -81.66 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -62.47 7.70 -54.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308964299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.432 kcal (2) G-P(sol) polarization free energy of solvation -62.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds