Wall clock time and date at job start Mon Mar 30 2020 01:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47344 * 332.37271 * 3 2 1 5 5 C 1.46904 * 110.99885 * 70.00109 * 4 3 2 6 6 C 1.50702 * 109.46891 * 293.95230 * 5 4 3 7 7 C 1.38633 * 119.74598 * 90.00296 * 6 5 4 8 8 C 1.37616 * 120.24466 * 180.27417 * 7 6 5 9 9 C 1.40716 * 119.74451 * 359.51741 * 8 7 6 10 10 C 1.41400 * 120.24358 * 180.23029 * 9 8 7 11 11 H 1.07997 * 119.99837 * 205.01419 * 10 9 8 12 12 C 1.39941 * 119.99936 * 25.01292 * 10 9 8 13 13 N 1.30828 * 119.99908 * 17.91293 * 12 10 9 14 14 Si 1.86800 * 120.00308 * 197.90610 * 12 10 9 15 15 H 1.48507 * 109.46781 * 94.52048 * 14 12 10 16 16 H 1.48500 * 109.47555 * 214.52617 * 14 12 10 17 17 H 1.48505 * 109.46830 * 334.52966 * 14 12 10 18 18 C 1.40709 * 119.51224 * 0.47977 * 9 8 7 19 19 C 1.37618 * 119.74618 * 359.75039 * 18 9 8 20 20 C 1.46902 * 110.99922 * 193.95419 * 4 3 2 21 21 C 1.53001 * 109.47318 * 66.04410 * 20 4 3 22 22 C 1.52992 * 117.50184 * 243.62369 * 21 20 4 23 23 C 1.52994 * 117.49930 * 174.99896 * 21 20 4 24 24 H 4.40885 * 5.52144 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.46985 * 212.37231 * 3 2 1 26 26 H 1.09001 * 109.46826 * 92.37367 * 3 2 1 27 27 H 1.08996 * 109.46689 * 173.95332 * 5 4 3 28 28 H 1.08999 * 109.46987 * 53.95566 * 5 4 3 29 29 H 1.07995 * 119.88073 * 359.97438 * 7 6 5 30 30 H 1.07999 * 120.12768 * 179.72005 * 8 7 6 31 31 H 0.96997 * 119.99679 * 179.97438 * 13 12 10 32 32 H 1.08003 * 120.13212 * 179.73018 * 18 9 8 33 33 H 1.08001 * 119.87732 * 180.02562 * 19 18 9 34 34 H 1.09001 * 109.47022 * 186.04764 * 20 4 3 35 35 H 1.09003 * 109.46994 * 306.04663 * 20 4 3 36 36 H 1.09001 * 115.54448 * 29.33194 * 21 20 4 37 37 H 1.09006 * 117.49893 * 0.02562 * 22 21 20 38 38 H 1.08999 * 117.50158 * 145.02236 * 22 21 20 39 39 H 1.09007 * 117.49597 * 214.98234 * 23 21 20 40 40 H 1.09003 * 117.50097 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.2262 0.6422 5 6 2.8700 -2.4022 -0.1970 6 6 1.3824 -2.6205 -0.2984 7 6 0.6665 -2.0158 -1.3201 8 6 -0.6931 -2.2036 -1.4191 9 6 -1.3549 -3.0211 -0.4843 10 6 -2.7509 -3.2253 -0.5790 11 1 -3.3192 -3.4872 0.3011 12 6 -3.3960 -3.0878 -1.8133 13 7 -2.7016 -3.1207 -2.9216 14 14 -5.2486 -2.8577 -1.8784 15 1 -5.5654 -1.4081 -1.9404 16 1 -5.7895 -3.5347 -3.0844 17 1 -5.8637 -3.4471 -0.6620 18 6 -0.6181 -3.6297 0.5484 19 6 0.7401 -3.4241 0.6309 20 6 4.5665 -1.1188 0.9596 21 6 4.7727 -0.0419 2.0267 22 6 5.5922 1.1902 1.6380 23 6 6.1870 0.1422 2.5806 24 1 -1.0498 -0.0002 0.0003 25 1 3.0089 0.8688 0.5502 26 1 3.0092 0.0434 -1.0268 27 1 3.3365 -3.2802 0.2497 28 1 3.2821 -2.2387 -1.1927 29 1 1.1770 -1.3912 -2.0381 30 1 -1.2496 -1.7280 -2.2132 31 1 -3.1488 -3.0258 -3.7770 32 1 -1.1166 -4.2556 1.2739 33 1 1.3078 -3.8905 1.4225 34 1 4.9283 -2.0761 1.3348 35 1 5.1192 -0.8489 0.0596 36 1 3.9398 0.1037 2.7147 37 1 5.9841 1.2339 0.6217 38 1 5.2985 2.1468 2.0700 39 1 6.2845 0.4093 3.6329 40 1 6.9705 -0.5043 2.1851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325916194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:46 Heat of formation + Delta-G solvation = 111.416613 kcal Electronic energy + Delta-G solvation = -19991.769255 eV Core-core repulsion = 17159.894403 eV Total energy + Delta-G solvation = -2831.874852 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.85028 -37.54135 -35.80410 -33.54897 -32.32241 -30.39204 -29.00169 -27.44502 -26.98266 -24.50074 -22.47207 -22.18103 -20.86994 -20.30837 -19.65890 -17.45542 -17.22277 -16.15934 -15.28401 -15.14643 -14.70375 -14.45873 -13.99456 -13.82020 -13.28656 -13.18081 -12.50650 -12.37938 -12.24467 -11.85652 -11.65700 -11.58869 -11.50008 -11.31510 -11.16617 -10.98404 -10.53403 -10.49304 -10.23897 -9.99074 -9.58208 -9.40999 -9.32849 -9.28150 -8.85176 -7.98537 -7.18582 -6.97462 -6.67716 -4.28746 2.77538 3.09142 3.13040 3.15658 3.19708 3.60583 3.74231 3.82762 3.96409 4.40721 4.70744 4.81420 4.86751 5.05483 5.23613 5.37841 5.51912 5.59143 5.64619 5.73253 5.78530 5.82358 5.86526 5.95244 6.00778 6.11297 6.27475 6.32392 6.46599 6.49316 6.84869 7.03514 7.13719 7.32021 7.45047 7.47994 7.48779 7.71245 7.98865 8.13919 8.24698 8.39233 8.60066 8.72747 8.97505 9.07136 10.23649 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.040729 B = 0.004152 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.314025 B = 6742.837936 C = 6943.314955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.197 4.197 3 C 0.179 3.821 4 N -0.529 5.529 5 C 0.120 3.880 6 C -0.208 4.208 7 C -0.063 4.063 8 C -0.171 4.171 9 C 0.119 3.881 10 C -0.466 4.466 11 H 0.075 0.925 12 C 0.078 3.922 13 N -0.794 5.794 14 Si 0.904 3.096 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.263 1.263 18 C -0.233 4.233 19 C -0.065 4.065 20 C 0.085 3.915 21 C -0.142 4.142 22 C -0.187 4.187 23 C -0.180 4.180 24 H 0.208 0.792 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.024 0.976 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.278 0.722 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.231 6.139 4.307 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.197 4.197 3 C 0.053 3.947 4 N -0.253 5.253 5 C -0.006 4.006 6 C -0.210 4.210 7 C -0.082 4.082 8 C -0.191 4.191 9 C 0.117 3.883 10 C -0.496 4.496 11 H 0.093 0.907 12 C -0.140 4.140 13 N -0.420 5.420 14 Si 0.728 3.272 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.187 1.187 18 C -0.253 4.253 19 C -0.084 4.084 20 C -0.043 4.043 21 C -0.161 4.161 22 C -0.224 4.224 23 C -0.218 4.218 24 H 0.225 0.775 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.986 6.062 4.479 13.323 hybrid contribution -0.619 0.118 -0.899 1.098 sum 10.367 6.179 3.580 12.589 Atomic orbital electron populations 1.24686 0.95594 0.98574 0.98921 1.22078 0.93610 1.02278 1.01778 1.18737 0.86290 0.92890 0.96827 1.62119 1.14064 1.02761 1.46342 1.20779 0.95399 0.91176 0.93279 1.18705 0.92778 1.08580 1.00940 1.20390 0.94749 0.97054 0.95968 1.21049 0.92765 1.02715 1.02545 1.17543 0.92775 0.87919 0.90082 1.19598 0.93070 1.42344 0.94614 0.90672 1.25867 1.00514 0.92354 0.95226 1.69848 1.38069 1.35402 0.98662 0.86378 0.82785 0.79298 0.78703 1.19417 1.20419 1.18651 1.20912 0.93402 1.07073 1.03875 1.20256 0.94258 0.97568 0.96275 1.21660 0.88891 0.98115 0.95629 1.22362 0.94759 0.97491 1.01469 1.23060 1.04944 0.94175 1.00175 1.22925 0.96688 1.03000 0.99160 0.77512 0.89811 0.93957 0.91699 0.95816 0.90560 0.86974 0.91080 0.89474 0.89883 0.90455 0.95127 0.86879 0.89062 0.89006 0.88936 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 15.00 29.55 0.44 -2.77 16 2 C -0.20 -3.78 9.67 -37.12 -0.36 -4.14 16 3 C 0.18 2.88 5.27 -6.61 -0.03 2.85 16 4 N -0.53 -8.53 4.55 -239.58 -1.09 -9.62 16 5 C 0.12 2.14 5.11 -4.97 -0.03 2.11 16 6 C -0.21 -4.53 4.01 -104.33 -0.42 -4.95 16 7 C -0.06 -1.44 5.61 -39.66 -0.22 -1.67 16 8 C -0.17 -4.33 6.61 -38.87 -0.26 -4.59 16 9 C 0.12 3.14 5.57 -106.83 -0.59 2.54 16 10 C -0.47 -12.35 9.05 -37.74 -0.34 -12.69 16 11 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 12 C 0.08 1.95 5.13 -17.34 -0.09 1.86 16 13 N -0.79 -20.57 11.00 55.55 0.61 -19.96 16 14 Si 0.90 18.73 29.60 -169.99 -5.03 13.70 16 15 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 16 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 18 C -0.23 -5.80 9.80 -38.88 -0.38 -6.18 16 19 C -0.06 -1.48 9.67 -39.66 -0.38 -1.86 16 20 C 0.08 1.07 5.24 -3.82 -0.02 1.05 16 21 C -0.14 -1.60 4.67 -90.63 -0.42 -2.03 16 22 C -0.19 -1.79 10.04 -26.74 -0.27 -2.05 16 23 C -0.18 -1.66 10.25 -26.74 -0.27 -1.94 16 24 H 0.21 4.11 7.60 -54.10 -0.41 3.70 16 25 H 0.08 1.19 6.81 -51.93 -0.35 0.84 16 26 H 0.04 0.66 7.99 -51.93 -0.41 0.25 16 27 H 0.06 1.09 7.87 -51.93 -0.41 0.68 16 28 H 0.02 0.41 7.95 -51.93 -0.41 0.00 16 29 H 0.08 1.69 7.66 -52.49 -0.40 1.29 16 30 H 0.11 2.98 6.21 -52.49 -0.33 2.66 16 31 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 32 H 0.09 2.09 8.06 -52.48 -0.42 1.66 16 33 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.08 0.94 7.93 -51.93 -0.41 0.53 16 35 H 0.03 0.37 7.85 -51.93 -0.41 -0.04 16 36 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -27.31 327.94 -10.27 -37.58 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.05 Total: 7.81 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: -3.65 Total: -34.45 kcal Atomic # 7 Polarization: -29.09 SS G_CDS: -0.48 Total: -29.57 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.31 -10.27 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325916194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.992 kcal (2) G-P(sol) polarization free energy of solvation -27.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds