Wall clock time and date at job start Mon Mar 30 2020 01:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47344 * 332.37271 * 3 2 1 5 5 C 1.46904 * 110.99885 * 70.00109 * 4 3 2 6 6 C 1.50702 * 109.46891 * 293.95230 * 5 4 3 7 7 C 1.38633 * 119.74598 * 90.00296 * 6 5 4 8 8 C 1.37616 * 120.24466 * 180.27417 * 7 6 5 9 9 C 1.40716 * 119.74451 * 359.51741 * 8 7 6 10 10 C 1.41400 * 120.24358 * 180.23029 * 9 8 7 11 11 H 1.07997 * 119.99837 * 205.01419 * 10 9 8 12 12 C 1.39941 * 119.99936 * 25.01292 * 10 9 8 13 13 N 1.30828 * 119.99908 * 17.91293 * 12 10 9 14 14 Si 1.86800 * 120.00308 * 197.90610 * 12 10 9 15 15 H 1.48507 * 109.46781 * 94.52048 * 14 12 10 16 16 H 1.48500 * 109.47555 * 214.52617 * 14 12 10 17 17 H 1.48505 * 109.46830 * 334.52966 * 14 12 10 18 18 C 1.40709 * 119.51224 * 0.47977 * 9 8 7 19 19 C 1.37618 * 119.74618 * 359.75039 * 18 9 8 20 20 C 1.46902 * 110.99922 * 193.95419 * 4 3 2 21 21 C 1.53001 * 109.47318 * 66.04410 * 20 4 3 22 22 C 1.52992 * 117.50184 * 243.62369 * 21 20 4 23 23 C 1.52994 * 117.49930 * 174.99896 * 21 20 4 24 24 H 4.40885 * 5.52144 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.46985 * 212.37231 * 3 2 1 26 26 H 1.09001 * 109.46826 * 92.37367 * 3 2 1 27 27 H 1.08996 * 109.46689 * 173.95332 * 5 4 3 28 28 H 1.08999 * 109.46987 * 53.95566 * 5 4 3 29 29 H 1.07995 * 119.88073 * 359.97438 * 7 6 5 30 30 H 1.07999 * 120.12768 * 179.72005 * 8 7 6 31 31 H 0.96997 * 119.99679 * 179.97438 * 13 12 10 32 32 H 1.08003 * 120.13212 * 179.73018 * 18 9 8 33 33 H 1.08001 * 119.87732 * 180.02562 * 19 18 9 34 34 H 1.09001 * 109.47022 * 186.04764 * 20 4 3 35 35 H 1.09003 * 109.46994 * 306.04663 * 20 4 3 36 36 H 1.09001 * 115.54448 * 29.33194 * 21 20 4 37 37 H 1.09006 * 117.49893 * 0.02562 * 22 21 20 38 38 H 1.08999 * 117.50158 * 145.02236 * 22 21 20 39 39 H 1.09007 * 117.49597 * 214.98234 * 23 21 20 40 40 H 1.09003 * 117.50097 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.2262 0.6422 5 6 2.8700 -2.4022 -0.1970 6 6 1.3824 -2.6205 -0.2984 7 6 0.6665 -2.0158 -1.3201 8 6 -0.6931 -2.2036 -1.4191 9 6 -1.3549 -3.0211 -0.4843 10 6 -2.7509 -3.2253 -0.5790 11 1 -3.3192 -3.4872 0.3011 12 6 -3.3960 -3.0878 -1.8133 13 7 -2.7016 -3.1207 -2.9216 14 14 -5.2486 -2.8577 -1.8784 15 1 -5.5654 -1.4081 -1.9404 16 1 -5.7895 -3.5347 -3.0844 17 1 -5.8637 -3.4471 -0.6620 18 6 -0.6181 -3.6297 0.5484 19 6 0.7401 -3.4241 0.6309 20 6 4.5665 -1.1188 0.9596 21 6 4.7727 -0.0419 2.0267 22 6 5.5922 1.1902 1.6380 23 6 6.1870 0.1422 2.5806 24 1 -1.0498 -0.0002 0.0003 25 1 3.0089 0.8688 0.5502 26 1 3.0092 0.0434 -1.0268 27 1 3.3365 -3.2802 0.2497 28 1 3.2821 -2.2387 -1.1927 29 1 1.1770 -1.3912 -2.0381 30 1 -1.2496 -1.7280 -2.2132 31 1 -3.1488 -3.0258 -3.7770 32 1 -1.1166 -4.2556 1.2739 33 1 1.3078 -3.8905 1.4225 34 1 4.9283 -2.0761 1.3348 35 1 5.1192 -0.8489 0.0596 36 1 3.9398 0.1037 2.7147 37 1 5.9841 1.2339 0.6217 38 1 5.2985 2.1468 2.0700 39 1 6.2845 0.4093 3.6329 40 1 6.9705 -0.5043 2.1851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325916194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:45 Heat of formation + Delta-G solvation = 98.652503 kcal Electronic energy + Delta-G solvation = -19992.322748 eV Core-core repulsion = 17159.894403 eV Total energy + Delta-G solvation = -2832.428345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.27997 -38.87672 -37.06991 -35.36016 -33.83945 -32.14652 -30.85443 -28.82774 -28.45992 -26.10202 -23.67100 -23.15361 -22.74951 -21.48605 -21.13752 -19.15707 -18.91577 -17.27539 -17.03218 -16.44700 -16.06720 -15.83084 -15.59200 -15.12188 -14.80450 -14.60170 -14.21339 -13.79293 -13.56471 -13.46844 -13.31809 -13.07844 -12.93145 -12.63110 -12.43114 -12.29115 -12.18477 -12.00285 -11.39412 -11.24904 -11.15256 -11.09793 -10.95083 -10.80548 -10.55287 -9.24763 -9.07170 -8.81753 -8.54855 -6.27063 1.00676 1.26386 1.37982 1.50652 1.51284 2.07795 2.22182 2.26708 2.75783 2.96817 3.29906 3.76993 3.88491 3.94933 4.11069 4.14092 4.33012 4.37087 4.43933 4.52414 4.59426 4.68711 4.72072 4.83119 4.84385 4.86459 4.94344 5.10054 5.10934 5.21444 5.33320 5.33376 5.41461 5.46266 5.57429 5.79227 6.05065 6.10432 6.18468 6.31084 6.39081 6.48541 6.79285 7.02494 7.04236 7.13890 8.37577 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.040729 B = 0.004152 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.314025 B = 6742.837936 C = 6943.314955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.187 4.187 3 C 0.177 3.823 4 N -0.540 5.540 5 C 0.122 3.878 6 C -0.195 4.195 7 C -0.061 4.061 8 C -0.179 4.179 9 C 0.092 3.908 10 C -0.505 4.505 11 H 0.068 0.932 12 C 0.039 3.961 13 N -0.827 5.827 14 Si 0.976 3.024 15 H -0.262 1.262 16 H -0.269 1.269 17 H -0.261 1.261 18 C -0.252 4.252 19 C -0.071 4.071 20 C 0.089 3.911 21 C -0.159 4.159 22 C -0.181 4.181 23 C -0.168 4.168 24 H 0.198 0.802 25 H 0.107 0.893 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.285 0.715 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.363 6.770 4.617 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.188 4.188 3 C 0.051 3.949 4 N -0.264 5.264 5 C -0.004 4.004 6 C -0.197 4.197 7 C -0.080 4.080 8 C -0.199 4.199 9 C 0.090 3.910 10 C -0.535 4.535 11 H 0.086 0.914 12 C -0.175 4.175 13 N -0.453 5.453 14 Si 0.797 3.203 15 H -0.187 1.187 16 H -0.194 1.194 17 H -0.185 1.185 18 C -0.272 4.272 19 C -0.090 4.090 20 C -0.038 4.038 21 C -0.178 4.178 22 C -0.218 4.218 23 C -0.205 4.205 24 H 0.215 0.785 25 H 0.124 0.876 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.052 0.948 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.142 6.695 4.801 15.511 hybrid contribution -1.101 -0.046 -0.939 1.448 sum 12.041 6.648 3.862 14.286 Atomic orbital electron populations 1.24759 0.96034 1.00030 1.00570 1.22852 0.94664 1.00911 1.00348 1.18942 0.84054 0.93896 0.98004 1.61965 1.16799 1.01912 1.45685 1.20728 0.92294 0.92844 0.94559 1.19129 0.95148 1.06271 0.99129 1.20488 0.93961 0.97016 0.96533 1.20887 0.93707 1.03124 1.02176 1.17793 0.93300 0.88829 0.91072 1.19794 0.93730 1.44711 0.95257 0.91373 1.26639 1.05172 0.91375 0.94327 1.69895 1.40077 1.36086 0.99282 0.85287 0.76722 0.79414 0.78837 1.18723 1.19372 1.18493 1.21079 0.94599 1.07572 1.03905 1.20529 0.93618 0.97706 0.97111 1.21706 0.86420 0.99108 0.96542 1.22207 0.95510 0.98479 1.01587 1.23138 1.03935 0.93917 1.00787 1.23010 0.95311 1.02496 0.99702 0.78499 0.87553 0.92746 0.90072 0.94819 0.89615 0.89014 0.90406 0.89613 0.87650 0.89795 0.93727 0.88595 0.88316 0.88503 0.88182 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -8.07 15.00 74.32 1.11 -6.95 16 2 C -0.19 -7.05 9.67 31.12 0.30 -6.74 16 3 C 0.18 5.24 5.27 84.50 0.44 5.69 16 4 N -0.54 -15.81 4.55 -911.89 -4.15 -19.95 16 5 C 0.12 4.01 5.11 85.56 0.44 4.45 16 6 C -0.20 -8.25 4.01 -19.67 -0.08 -8.33 16 7 C -0.06 -2.82 5.61 22.22 0.12 -2.69 16 8 C -0.18 -9.39 6.61 22.73 0.15 -9.24 16 9 C 0.09 5.05 5.57 -21.29 -0.12 4.93 16 10 C -0.50 -27.93 9.05 23.46 0.21 -27.72 16 11 H 0.07 3.70 7.91 -2.91 -0.02 3.68 16 12 C 0.04 2.02 5.13 85.26 0.44 2.46 16 13 N -0.83 -44.13 11.00 21.83 0.24 -43.89 16 14 Si 0.98 39.25 29.60 68.60 2.03 41.28 16 15 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 16 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 18 C -0.25 -12.86 9.80 22.73 0.22 -12.63 16 19 C -0.07 -3.21 9.67 22.22 0.21 -2.99 16 20 C 0.09 1.93 5.24 86.30 0.45 2.38 16 21 C -0.16 -3.10 4.67 -10.80 -0.05 -3.15 16 22 C -0.18 -2.83 10.04 30.59 0.31 -2.53 16 23 C -0.17 -2.51 10.25 30.59 0.31 -2.20 16 24 H 0.20 8.35 7.60 -4.43 -0.03 8.31 16 25 H 0.11 2.69 6.81 -2.39 -0.02 2.68 16 26 H 0.05 1.52 7.99 -2.39 -0.02 1.50 16 27 H 0.08 2.43 7.87 -2.39 -0.02 2.41 16 28 H 0.03 1.05 7.95 -2.39 -0.02 1.04 16 29 H 0.09 3.74 7.66 -2.91 -0.02 3.72 16 30 H 0.09 5.12 6.21 -2.91 -0.02 5.10 16 31 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 32 H 0.09 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 34 H 0.08 1.72 7.93 -2.39 -0.02 1.70 16 35 H 0.04 0.87 7.85 -2.39 -0.02 0.85 16 36 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.10 1.42 8.03 -2.38 -0.02 1.40 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -59.98 327.94 3.61 -56.38 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 1.00 Total: 31.45 kcal Atomic # 6 Polarization: -69.75 SS G_CDS: 4.48 Total: -65.27 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -3.91 Total: -63.84 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -59.98 3.61 -56.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325916194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.031 kcal (2) G-P(sol) polarization free energy of solvation -59.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds