Wall clock time and date at job start Mon Mar 30 2020 01:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00111 * 2 1 4 4 H 1.48501 * 109.47091 * 269.99840 * 3 2 1 5 5 H 1.48500 * 109.47032 * 29.99818 * 3 2 1 6 6 H 1.48500 * 109.47292 * 149.99439 * 3 2 1 7 7 C 1.37880 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00122 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46883 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46958 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47196 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46978 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00383 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99714 * 179.97438 * 13 12 11 16 16 C 1.46917 * 120.63240 * 354.85412 * 15 13 12 17 17 C 1.53190 * 108.77516 * 233.62919 * 16 15 13 18 18 C 1.53037 * 109.34051 * 305.34655 * 17 16 15 19 19 C 1.53114 * 109.50167 * 61.34633 * 18 17 16 20 20 C 1.46932 * 120.62782 * 174.87020 * 15 13 12 21 21 H 1.09000 * 109.58801 * 246.30252 * 20 15 13 22 22 C 1.53004 * 109.58642 * 6.58780 * 20 15 13 23 23 O 1.42894 * 109.47006 * 65.47774 * 22 20 15 24 24 H 0.96996 * 120.00511 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46711 * 59.99617 * 9 7 2 26 26 H 1.08996 * 109.46658 * 299.99391 * 9 7 2 27 27 H 1.08994 * 109.47670 * 59.99661 * 10 9 7 28 28 H 1.09004 * 109.47309 * 299.99586 * 10 9 7 29 29 H 1.08994 * 109.47479 * 59.99210 * 11 10 9 30 30 H 1.09004 * 109.46500 * 299.99747 * 11 10 9 31 31 H 1.09005 * 109.46876 * 59.99873 * 12 11 10 32 32 H 1.08988 * 109.47297 * 299.99786 * 12 11 10 33 33 H 1.09007 * 109.59177 * 113.84461 * 16 15 13 34 34 H 1.08994 * 109.70527 * 353.48625 * 16 15 13 35 35 H 1.08998 * 109.49751 * 65.31468 * 17 16 15 36 36 H 1.09007 * 109.50163 * 185.37948 * 17 16 15 37 37 H 1.08998 * 109.46607 * 181.40105 * 18 17 16 38 38 H 1.08998 * 109.46606 * 301.36250 * 18 17 16 39 39 H 1.09005 * 109.48527 * 178.69998 * 19 18 17 40 40 H 1.08995 * 109.51314 * 58.63610 * 19 18 17 41 41 H 1.09003 * 109.46563 * 185.47888 * 22 20 15 42 42 H 1.08995 * 109.46741 * 305.47638 * 22 20 15 43 43 H 0.96704 * 113.99408 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4745 -6.1500 -0.0008 13 6 1.7210 -7.4551 -0.0008 14 8 0.5082 -7.4552 0.0002 15 7 2.3950 -8.6223 -0.0018 16 6 3.8595 -8.6410 -0.1163 17 6 4.2515 -9.5583 -1.2789 18 6 3.6204 -10.9369 -1.0718 19 6 2.0952 -10.8034 -1.0540 20 6 1.6788 -9.9003 0.1112 21 1 1.9332 -10.3793 1.0567 22 6 0.1705 -9.6500 0.0525 23 8 -0.1788 -9.1463 -1.2383 24 1 -0.4851 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8903 27 1 2.8720 -3.6044 0.8904 28 1 2.8719 -3.6044 -0.8895 29 1 0.8538 -5.0446 -0.8902 30 1 0.8534 -5.0450 0.8897 31 1 3.1013 -6.0927 0.8893 32 1 3.1011 -6.0919 -0.8906 33 1 4.2938 -9.0186 0.8094 34 1 4.2261 -7.6324 -0.3070 35 1 3.8936 -9.1314 -2.2158 36 1 5.3366 -9.6566 -1.3150 37 1 3.9183 -11.5987 -1.8850 38 1 3.9594 -11.3527 -0.1229 39 1 1.6454 -11.7885 -0.9295 40 1 1.7571 -10.3652 -1.9929 41 1 -0.3601 -10.5847 0.2337 42 1 -0.1067 -8.9213 0.8141 43 1 -1.1222 -8.9641 -1.3472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326054890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:28 Heat of formation + Delta-G solvation = -99.481689 kcal Electronic energy + Delta-G solvation = -21211.982286 eV Core-core repulsion = 18063.653278 eV Total energy + Delta-G solvation = -3148.329008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56932 -37.49990 -36.29716 -34.78531 -33.03739 -32.55586 -31.79201 -29.54937 -27.01501 -25.51214 -24.55490 -22.80537 -21.67175 -20.80925 -19.91160 -18.75112 -17.39065 -16.84645 -16.15870 -15.76697 -15.60251 -14.83318 -14.57378 -14.44956 -14.28108 -13.96215 -13.68668 -13.37944 -13.13935 -12.74879 -12.51187 -12.11184 -11.74941 -11.61308 -11.57793 -11.43223 -11.12952 -10.95481 -10.91667 -10.65041 -10.48253 -10.45770 -10.32754 -9.91135 -9.56363 -9.25966 -8.99691 -8.86085 -8.45344 -8.27836 -5.92680 -3.95012 2.84964 2.98960 3.35793 3.41646 3.44985 4.27227 4.50197 4.51366 4.58266 4.61964 4.83706 4.93414 5.04603 5.12283 5.26347 5.36371 5.42256 5.42648 5.44887 5.48634 5.55509 5.63185 5.68600 5.77004 5.87835 5.94629 5.96073 6.19562 6.21604 6.36268 6.55162 6.63321 6.90226 7.07562 7.24615 7.48969 7.77310 7.86605 7.94020 8.09195 8.43138 8.51227 9.12770 9.68443 11.18698 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034598 B = 0.003311 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.090256 B = 8455.426162 C = 9049.623989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.101 4.101 12 C -0.138 4.138 13 C 0.516 3.484 14 O -0.513 6.513 15 N -0.615 5.615 16 C 0.108 3.892 17 C -0.136 4.136 18 C -0.119 4.119 19 C -0.128 4.128 20 C 0.148 3.852 21 H 0.078 0.922 22 C 0.082 3.918 23 O -0.554 6.554 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.026 0.974 42 H 0.078 0.922 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.961 -24.610 -0.183 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.139 4.139 12 C -0.178 4.178 13 C 0.305 3.695 14 O -0.388 6.388 15 N -0.351 5.351 16 C -0.015 4.015 17 C -0.175 4.175 18 C -0.157 4.157 19 C -0.166 4.166 20 C 0.045 3.955 21 H 0.095 0.905 22 C 0.004 3.996 23 O -0.359 6.359 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.044 0.956 42 H 0.096 0.904 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.790 -24.540 -0.266 25.464 hybrid contribution 0.023 0.879 0.077 0.883 sum 6.813 -23.661 -0.188 24.623 Atomic orbital electron populations 1.69973 1.06046 1.26471 1.51027 1.25042 0.94838 0.99211 0.95497 0.86613 0.79829 0.83616 0.78040 1.20716 1.21275 1.19921 1.21298 0.92983 0.91234 1.50285 0.92775 1.19090 0.94060 0.91272 0.97258 1.21648 0.99065 0.94119 0.99961 1.21428 0.96999 0.92663 1.02784 1.21826 1.00080 0.92474 1.03404 1.20905 0.88237 0.85081 0.75264 1.90604 1.13983 1.86317 1.47939 1.48105 1.06801 1.05570 1.74599 1.21710 0.80093 1.01390 0.98343 1.21922 1.00569 0.95818 0.99144 1.21532 0.95503 0.96872 1.01800 1.21905 0.95566 0.99106 1.00065 1.21294 0.91740 0.84449 0.98037 0.90454 1.22318 0.92727 0.95982 0.88556 1.86433 1.29725 1.87547 1.32179 0.93071 0.96621 0.96631 0.93579 0.93571 0.91835 0.91992 0.89561 0.89525 0.91632 0.89250 0.91284 0.90810 0.91790 0.92044 0.91445 0.90294 0.95576 0.90420 0.78066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -1.97 4.10 -27.88 -0.11 -2.08 16 13 C 0.52 7.61 7.41 -10.99 -0.08 7.53 16 14 O -0.51 -8.93 10.34 -19.16 -0.20 -9.13 16 15 N -0.61 -7.16 2.97 -165.22 -0.49 -7.65 16 16 C 0.11 0.93 6.32 -3.72 -0.02 0.91 16 17 C -0.14 -1.05 6.08 -26.61 -0.16 -1.21 16 18 C -0.12 -0.88 5.89 -26.65 -0.16 -1.04 16 19 C -0.13 -1.18 5.25 -26.57 -0.14 -1.32 16 20 C 0.15 1.56 3.30 -67.59 -0.22 1.34 16 21 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 22 C 0.08 0.97 5.81 37.16 0.22 1.19 16 23 O -0.55 -7.51 10.30 -59.95 -0.62 -8.13 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 32 H 0.09 1.12 7.48 -51.94 -0.39 0.73 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.74 5.97 -51.93 -0.31 0.43 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.92 7.36 -51.93 -0.38 0.53 16 41 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.08 1.09 5.99 -52.07 -0.31 0.77 16 43 H 0.37 4.07 9.12 45.56 0.42 4.49 16 LS Contribution 335.10 15.07 5.05 5.05 Total: -1.00 -33.82 335.10 -8.89 -42.71 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.85 Total: -0.17 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.49 Total: -12.70 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.25 Total: -34.70 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.82 Total: -17.26 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.82 -8.89 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326054890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.770 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds