Wall clock time and date at job start Mon Mar 30 2020 01:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.47028 * 2 1 4 4 C 1.42900 * 114.00112 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47334 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47335 * 180.02562 * 5 4 3 7 7 N 1.40583 * 127.38539 * 272.63753 * 6 5 4 8 8 N 1.28912 * 106.81860 * 180.02562 * 7 6 5 9 9 N 1.28426 * 110.31466 * 359.72852 * 8 7 6 10 10 C 1.31476 * 110.50793 * 0.45639 * 9 8 7 11 11 N 1.38376 * 126.43877 * 179.81527 * 10 9 8 12 12 C 1.46900 * 111.00453 * 253.20272 * 11 10 9 13 13 C 1.52998 * 109.46903 * 61.00987 * 12 11 10 14 14 C 1.46903 * 110.99883 * 17.16125 * 11 10 9 15 15 C 1.50704 * 109.47122 * 165.37508 * 14 11 10 16 16 H 1.07999 * 120.00087 * 355.23013 * 15 14 11 17 17 C 1.37876 * 119.99744 * 175.22998 * 15 14 11 18 18 N 1.31521 * 119.99316 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00456 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47072 * 89.99552 * 19 17 15 21 21 H 1.48496 * 109.47231 * 210.00200 * 19 17 15 22 22 H 1.48503 * 109.46970 * 330.00144 * 19 17 15 23 23 H 1.09001 * 109.46856 * 60.00270 * 1 2 3 24 24 H 1.09004 * 109.46831 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47133 * 299.99971 * 1 2 3 26 26 H 1.08992 * 109.47133 * 240.00029 * 2 1 3 27 27 H 1.09001 * 109.46856 * 119.99730 * 2 1 3 28 28 H 1.09006 * 109.46655 * 60.00284 * 4 3 2 29 29 H 1.08990 * 109.47387 * 300.00360 * 4 3 2 30 30 H 1.09006 * 109.46894 * 60.00581 * 5 4 3 31 31 H 1.09004 * 109.47409 * 300.00553 * 5 4 3 32 32 H 1.08991 * 109.47127 * 181.01104 * 12 11 10 33 33 H 1.08999 * 109.46613 * 301.01363 * 12 11 10 34 34 H 1.09008 * 109.47221 * 306.87779 * 13 12 11 35 35 H 1.09000 * 109.47334 * 66.87799 * 13 12 11 36 36 H 1.08998 * 109.47073 * 186.87776 * 13 12 11 37 37 H 1.08994 * 109.47222 * 45.37537 * 14 11 10 38 38 H 1.08995 * 109.46798 * 285.37350 * 14 11 10 39 39 H 0.97007 * 119.99377 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 7 5.2858 3.0541 -0.0001 7 7 6.1407 3.0708 1.1157 8 7 7.3422 3.1873 0.6633 9 7 7.3324 3.2398 -0.6198 10 6 6.1007 3.1684 -1.0743 11 7 5.7115 3.1986 -2.4018 12 6 5.0869 4.4849 -2.7383 13 6 6.0953 5.6144 -2.5185 14 6 6.8471 2.9164 -3.2899 15 6 6.3374 2.6030 -4.6731 16 1 5.2749 2.5367 -4.8549 17 6 7.2276 2.4010 -5.7064 18 7 6.7826 2.1280 -6.9136 19 14 9.0653 2.5150 -5.3920 20 1 9.5863 1.1774 -5.0118 21 1 9.7504 2.9813 -6.6242 22 1 9.3201 3.4770 -4.2897 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8340 0.9765 -0.8893 29 1 3.8333 0.9768 0.8907 30 1 3.4222 3.4224 0.8895 31 1 3.4229 3.4215 -0.8905 32 1 4.7744 4.4749 -3.7824 33 1 4.2177 4.6446 -2.1003 34 1 6.4995 5.5492 -1.5083 35 1 6.9064 5.5230 -3.2410 36 1 5.5985 6.5756 -2.6497 37 1 7.4050 2.0623 -2.9062 38 1 7.5004 3.7878 -3.3323 39 1 7.4089 1.9855 -7.6406 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332516541.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:36 Heat of formation + Delta-G solvation = 83.374476 kcal Electronic energy + Delta-G solvation = -21230.711692 eV Core-core repulsion = 18019.064330 eV Total energy + Delta-G solvation = -3211.647362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.159 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.67531 -38.38469 -37.91054 -35.17012 -32.73226 -31.78852 -31.45335 -29.91494 -29.27259 -27.44330 -24.61703 -23.20761 -23.00434 -22.62999 -21.75865 -20.06741 -17.50181 -17.05119 -16.51637 -16.44985 -16.26656 -15.91007 -14.95510 -14.64170 -14.44910 -14.17869 -13.70571 -13.39601 -12.83045 -12.69990 -12.50789 -12.40885 -12.39698 -12.01283 -11.84044 -11.53734 -11.40581 -11.32236 -10.93163 -10.80320 -10.63761 -10.52773 -10.32209 -10.13787 -9.92723 -9.81926 -9.50380 -8.70532 -8.15019 -6.20262 -4.21538 1.26975 1.86759 2.63297 3.25518 3.32895 3.39487 3.47048 4.01424 4.32549 4.37315 4.67757 4.83119 4.87856 5.02211 5.03280 5.11512 5.17306 5.18401 5.33631 5.39375 5.42381 5.54118 5.54427 5.68642 5.74404 5.79553 5.88992 5.93128 6.14481 6.29864 6.41303 6.67249 6.76581 6.90131 7.19180 7.26597 7.60968 8.37765 8.81588 8.86510 9.38813 10.91410 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.005762 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.463257 B = 4857.881802 C = 5805.552832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.385 6.385 4 C 0.051 3.949 5 C 0.135 3.865 6 N -0.390 5.390 7 N -0.103 5.103 8 N -0.036 5.036 9 N -0.360 5.360 10 C 0.444 3.556 11 N -0.445 5.445 12 C 0.062 3.938 13 C -0.187 4.187 14 C 0.170 3.830 15 C -0.522 4.522 16 H 0.084 0.916 17 C 0.079 3.921 18 N -0.892 5.892 19 Si 0.867 3.133 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.259 1.259 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.983 0.717 12.020 15.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.304 6.304 4 C -0.027 4.027 5 C 0.012 3.988 6 N -0.191 5.191 7 N -0.090 5.090 8 N -0.032 5.032 9 N -0.218 5.218 10 C 0.079 3.921 11 N -0.170 5.170 12 C -0.065 4.065 13 C -0.246 4.246 14 C 0.045 3.955 15 C -0.560 4.560 16 H 0.102 0.898 17 C -0.125 4.125 18 N -0.530 5.530 19 Si 0.693 3.307 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.184 1.184 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.477 0.488 12.734 15.881 hybrid contribution 0.832 0.062 -0.416 0.932 sum -8.645 0.550 12.318 15.059 Atomic orbital electron populations 1.21744 0.93466 1.02358 1.03206 1.22501 0.95621 0.83109 1.00537 1.87764 1.19723 1.27284 1.95625 1.22658 0.82165 0.95783 1.02082 1.21547 0.73328 0.97567 1.06339 1.51197 1.08824 1.54274 1.04775 1.82451 0.95290 1.24690 1.06616 1.77845 1.12900 1.08889 1.03546 1.75076 1.17625 1.26377 1.02765 1.23755 0.85619 0.92573 0.90169 1.59226 1.32540 1.30746 0.94478 1.22267 0.95734 0.84055 1.04396 1.22428 1.01111 0.99016 1.02004 1.20431 0.86243 0.97323 0.91483 1.20841 0.96019 1.49457 0.89732 0.89774 1.24772 0.98692 0.94247 0.94774 1.69872 1.35079 1.47477 1.00553 0.86964 0.85780 0.79585 0.78337 1.19884 1.20942 1.18376 0.91580 0.90992 0.91906 0.92799 0.93330 0.91478 0.92449 0.87454 0.86776 0.86667 0.91770 0.93554 0.90579 0.91765 0.94567 0.95714 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.57 6.66 37.16 0.25 0.82 16 3 O -0.39 -4.57 10.34 -35.23 -0.36 -4.93 16 4 C 0.05 0.63 6.26 37.16 0.23 0.86 16 5 C 0.14 1.66 6.83 -4.04 -0.03 1.64 16 6 N -0.39 -6.28 3.69 -61.86 -0.23 -6.51 16 7 N -0.10 -1.82 13.93 60.35 0.84 -0.98 16 8 N -0.04 -0.70 13.38 60.35 0.81 0.11 16 9 N -0.36 -7.44 11.10 30.10 0.33 -7.11 16 10 C 0.44 8.34 5.55 -320.41 -1.78 6.56 16 11 N -0.45 -8.62 4.69 -176.23 -0.83 -9.45 16 12 C 0.06 1.01 5.76 -3.82 -0.02 0.99 16 13 C -0.19 -2.97 9.28 37.16 0.34 -2.62 16 14 C 0.17 3.90 3.14 -4.97 -0.02 3.88 16 15 C -0.52 -13.65 9.01 -34.44 -0.31 -13.96 16 16 H 0.08 2.35 7.84 -52.49 -0.41 1.94 16 17 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 18 N -0.89 -25.79 13.96 55.43 0.77 -25.02 16 19 Si 0.87 20.73 27.57 -169.99 -4.69 16.05 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.26 -6.07 6.41 56.52 0.36 -5.71 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.11 1.32 6.18 -51.93 -0.32 1.00 16 32 H 0.12 2.00 7.22 -51.93 -0.37 1.62 16 33 H 0.06 0.86 6.28 -51.93 -0.33 0.53 16 34 H 0.05 0.78 6.87 -51.92 -0.36 0.42 16 35 H 0.08 1.35 6.61 -51.93 -0.34 1.01 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.89 7.51 -51.93 -0.39 0.50 16 38 H 0.03 0.58 4.78 -51.93 -0.25 0.34 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -30.00 322.39 -5.29 -35.29 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.75 Total: -1.71 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.05 Total: -0.59 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 1.70 Total: -48.95 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.36 Total: -4.93 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.69 Total: 16.05 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.00 -5.29 -35.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332516541.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.663 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds