Wall clock time and date at job start Mon Mar 30 2020 01:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.47028 * 2 1 4 4 C 1.42900 * 114.00112 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47334 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47335 * 180.02562 * 5 4 3 7 7 N 1.40583 * 127.38539 * 272.63753 * 6 5 4 8 8 N 1.28912 * 106.81860 * 180.02562 * 7 6 5 9 9 N 1.28426 * 110.31466 * 359.72852 * 8 7 6 10 10 C 1.31476 * 110.50793 * 0.45639 * 9 8 7 11 11 N 1.38376 * 126.43877 * 179.81527 * 10 9 8 12 12 C 1.46900 * 111.00453 * 253.20272 * 11 10 9 13 13 C 1.52998 * 109.46903 * 61.00987 * 12 11 10 14 14 C 1.46903 * 110.99883 * 17.16125 * 11 10 9 15 15 C 1.50704 * 109.47122 * 165.37508 * 14 11 10 16 16 H 1.07999 * 120.00087 * 355.23013 * 15 14 11 17 17 C 1.37876 * 119.99744 * 175.22998 * 15 14 11 18 18 N 1.31521 * 119.99316 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00456 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47072 * 89.99552 * 19 17 15 21 21 H 1.48496 * 109.47231 * 210.00200 * 19 17 15 22 22 H 1.48503 * 109.46970 * 330.00144 * 19 17 15 23 23 H 1.09001 * 109.46856 * 60.00270 * 1 2 3 24 24 H 1.09004 * 109.46831 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47133 * 299.99971 * 1 2 3 26 26 H 1.08992 * 109.47133 * 240.00029 * 2 1 3 27 27 H 1.09001 * 109.46856 * 119.99730 * 2 1 3 28 28 H 1.09006 * 109.46655 * 60.00284 * 4 3 2 29 29 H 1.08990 * 109.47387 * 300.00360 * 4 3 2 30 30 H 1.09006 * 109.46894 * 60.00581 * 5 4 3 31 31 H 1.09004 * 109.47409 * 300.00553 * 5 4 3 32 32 H 1.08991 * 109.47127 * 181.01104 * 12 11 10 33 33 H 1.08999 * 109.46613 * 301.01363 * 12 11 10 34 34 H 1.09008 * 109.47221 * 306.87779 * 13 12 11 35 35 H 1.09000 * 109.47334 * 66.87799 * 13 12 11 36 36 H 1.08998 * 109.47073 * 186.87776 * 13 12 11 37 37 H 1.08994 * 109.47222 * 45.37537 * 14 11 10 38 38 H 1.08995 * 109.46798 * 285.37350 * 14 11 10 39 39 H 0.97007 * 119.99377 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 7 5.2858 3.0541 -0.0001 7 7 6.1407 3.0708 1.1157 8 7 7.3422 3.1873 0.6633 9 7 7.3324 3.2398 -0.6198 10 6 6.1007 3.1684 -1.0743 11 7 5.7115 3.1986 -2.4018 12 6 5.0869 4.4849 -2.7383 13 6 6.0953 5.6144 -2.5185 14 6 6.8471 2.9164 -3.2899 15 6 6.3374 2.6030 -4.6731 16 1 5.2749 2.5367 -4.8549 17 6 7.2276 2.4010 -5.7064 18 7 6.7826 2.1280 -6.9136 19 14 9.0653 2.5150 -5.3920 20 1 9.5863 1.1774 -5.0118 21 1 9.7504 2.9813 -6.6242 22 1 9.3201 3.4770 -4.2897 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8340 0.9765 -0.8893 29 1 3.8333 0.9768 0.8907 30 1 3.4222 3.4224 0.8895 31 1 3.4229 3.4215 -0.8905 32 1 4.7744 4.4749 -3.7824 33 1 4.2177 4.6446 -2.1003 34 1 6.4995 5.5492 -1.5083 35 1 6.9064 5.5230 -3.2410 36 1 5.5985 6.5756 -2.6497 37 1 7.4050 2.0623 -2.9062 38 1 7.5004 3.7878 -3.3323 39 1 7.4089 1.9855 -7.6406 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332516541.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:36 Heat of formation + Delta-G solvation = 62.855680 kcal Electronic energy + Delta-G solvation = -21231.601454 eV Core-core repulsion = 18019.064330 eV Total energy + Delta-G solvation = -3212.537124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.11974 -39.50976 -39.22839 -36.40932 -34.77276 -32.88953 -32.63858 -31.47637 -30.42446 -29.14002 -25.89375 -24.77974 -24.06589 -23.75178 -23.12961 -21.60845 -19.04348 -18.57070 -17.88802 -17.73701 -17.37755 -17.16938 -16.48277 -16.06016 -15.61209 -15.49912 -15.11228 -14.71013 -14.56326 -14.05029 -13.68455 -13.53102 -13.47852 -13.26970 -13.15456 -13.00206 -12.73580 -12.54363 -12.24818 -12.20469 -12.04979 -12.03270 -11.94004 -11.65721 -11.50922 -11.37197 -10.80465 -10.71802 -9.71740 -8.31689 -6.36014 -0.13660 0.57106 1.14861 1.35064 1.39099 1.48669 2.32058 2.37390 2.74443 3.02214 3.17835 3.51537 3.72331 3.92587 3.99878 4.08230 4.12503 4.15923 4.20685 4.29860 4.38308 4.46908 4.50915 4.52462 4.67826 4.74510 4.83661 4.84077 5.02179 5.03298 5.04231 5.23163 5.27421 5.38389 5.51791 5.91432 6.03102 6.33655 6.69495 7.26891 7.39708 8.83036 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.005762 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.463257 B = 4857.881802 C = 5805.552832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.392 6.392 4 C 0.059 3.941 5 C 0.128 3.872 6 N -0.374 5.374 7 N -0.091 5.091 8 N -0.052 5.052 9 N -0.387 5.387 10 C 0.439 3.561 11 N -0.449 5.449 12 C 0.058 3.942 13 C -0.179 4.179 14 C 0.185 3.815 15 C -0.515 4.515 16 H 0.058 0.942 17 C 0.030 3.970 18 N -0.934 5.934 19 Si 0.922 3.078 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.252 1.252 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.136 0.864 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.037 0.963 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.747 1.274 13.551 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 O -0.311 6.311 4 C -0.020 4.020 5 C 0.007 3.993 6 N -0.174 5.174 7 N -0.079 5.079 8 N -0.048 5.048 9 N -0.246 5.246 10 C 0.073 3.927 11 N -0.173 5.173 12 C -0.067 4.067 13 C -0.238 4.238 14 C 0.059 3.941 15 C -0.554 4.554 16 H 0.076 0.924 17 C -0.169 4.169 18 N -0.573 5.573 19 Si 0.747 3.253 20 H -0.198 1.198 21 H -0.203 1.203 22 H -0.176 1.176 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.143 0.857 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.271 1.052 14.288 17.628 hybrid contribution 0.899 -0.140 -0.827 1.230 sum -9.372 0.912 13.460 16.427 Atomic orbital electron populations 1.21757 0.91972 1.03581 1.03101 1.22731 0.96866 0.82222 1.00862 1.87754 1.19070 1.28642 1.95633 1.22495 0.82676 0.95516 1.01288 1.21925 0.70996 0.98061 1.08300 1.51331 1.09868 1.52786 1.03460 1.82371 0.95068 1.23502 1.06934 1.77834 1.13662 1.10067 1.03221 1.74987 1.18978 1.27257 1.03393 1.23511 0.85775 0.93250 0.90164 1.59110 1.31030 1.32706 0.94474 1.22424 0.96877 0.82902 1.04527 1.22350 1.00404 1.00435 1.00597 1.20033 0.87141 0.96545 0.90395 1.20975 0.94825 1.48263 0.91324 0.92376 1.25470 1.02702 0.94199 0.94570 1.69981 1.36569 1.49244 1.01536 0.86075 0.81056 0.79645 0.78538 1.19776 1.20266 1.17568 0.92170 0.89157 0.91477 0.93321 0.92211 0.93500 0.92092 0.84612 0.85683 0.87920 0.88140 0.94420 0.92898 0.88584 0.96035 0.95856 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.05 0.88 6.66 71.98 0.48 1.36 16 3 O -0.39 -8.56 10.34 -148.98 -1.54 -10.10 16 4 C 0.06 1.34 6.26 71.98 0.45 1.79 16 5 C 0.13 2.81 6.83 86.38 0.59 3.40 16 6 N -0.37 -11.27 3.69 -349.62 -1.29 -12.56 16 7 N -0.09 -3.04 13.93 37.02 0.52 -2.52 16 8 N -0.05 -1.97 13.38 37.02 0.50 -1.48 16 9 N -0.39 -15.69 11.10 -58.69 -0.65 -16.34 16 10 C 0.44 15.94 5.55 260.65 1.45 17.39 16 11 N -0.45 -17.03 4.69 -711.47 -3.33 -20.36 16 12 C 0.06 1.81 5.76 86.30 0.50 2.31 16 13 C -0.18 -5.39 9.28 71.98 0.67 -4.73 16 14 C 0.18 8.47 3.14 85.56 0.27 8.74 16 15 C -0.52 -27.28 9.01 25.60 0.23 -27.05 16 16 H 0.06 3.32 7.84 -2.91 -0.02 3.30 16 17 C 0.03 1.66 5.47 84.65 0.46 2.13 16 18 N -0.93 -54.78 13.96 21.45 0.30 -54.48 16 19 Si 0.92 42.82 27.57 68.60 1.89 44.71 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.25 -11.29 6.41 99.48 0.64 -10.65 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.14 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.13 2.52 6.18 -2.38 -0.01 2.50 16 32 H 0.10 3.49 7.22 -2.39 -0.02 3.47 16 33 H 0.10 2.38 6.28 -2.39 -0.02 2.37 16 34 H 0.04 1.20 6.87 -2.38 -0.02 1.18 16 35 H 0.05 1.83 6.61 -2.39 -0.02 1.81 16 36 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.02 1.05 7.51 -2.39 -0.02 1.04 16 38 H 0.02 1.09 4.78 -2.39 -0.01 1.08 16 39 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -64.25 322.39 3.20 -61.05 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.97 Total: 8.05 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 5.84 Total: 4.04 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -3.96 Total: -107.74 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -1.54 Total: -10.10 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.89 Total: 44.71 kcal Total: -64.25 3.20 -61.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332516541.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.910 kcal (2) G-P(sol) polarization free energy of solvation -64.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds