Wall clock time and date at job start Mon Mar 30 2020 01:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99740 * 2 1 4 4 H 1.48493 * 109.47514 * 270.00011 * 3 2 1 5 5 H 1.48501 * 109.47177 * 29.99881 * 3 2 1 6 6 H 1.48498 * 109.47197 * 149.99677 * 3 2 1 7 7 C 1.37874 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.53112 * 109.52470 * 179.97438 * 9 7 2 11 11 C 1.53033 * 109.27990 * 177.62284 * 10 9 7 12 12 N 1.46852 * 109.52724 * 300.82295 * 11 10 9 13 13 C 1.46892 * 111.00455 * 185.83924 * 12 11 10 14 14 C 1.52999 * 109.47494 * 170.00448 * 13 12 11 15 15 H 1.08993 * 109.47132 * 59.99585 * 14 13 12 16 16 O 1.42907 * 109.46821 * 300.00127 * 14 13 12 17 17 C 1.52992 * 109.47306 * 180.02562 * 14 13 12 18 18 O 1.42895 * 112.90885 * 311.24717 * 17 14 13 19 19 C 1.53784 * 113.61673 * 82.49958 * 17 14 13 20 20 C 1.53778 * 87.08081 * 139.98135 * 19 17 14 21 21 C 1.53778 * 87.08449 * 334.56700 * 20 19 17 22 22 C 1.46854 * 111.19291 * 61.73937 * 12 11 10 23 23 C 1.53036 * 109.52288 * 298.25918 * 22 12 11 24 24 H 0.96997 * 120.00476 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.51930 * 59.86795 * 9 7 2 26 26 H 1.09008 * 109.49720 * 57.68715 * 10 9 7 27 27 H 1.08997 * 109.50586 * 297.56914 * 10 9 7 28 28 H 1.09005 * 109.46552 * 180.81023 * 11 10 9 29 29 H 1.08992 * 109.45682 * 60.83585 * 11 10 9 30 30 H 1.09006 * 109.47030 * 49.99858 * 13 12 11 31 31 H 1.08998 * 109.47055 * 290.00487 * 13 12 11 32 32 H 0.96705 * 113.99535 * 299.99515 * 16 14 13 33 33 H 0.96703 * 114.00300 * 178.41737 * 18 17 14 34 34 H 1.08993 * 113.61313 * 254.52732 * 19 17 14 35 35 H 1.09000 * 113.61578 * 25.43464 * 19 17 14 36 36 H 1.08999 * 113.61526 * 220.02035 * 20 19 17 37 37 H 1.09004 * 113.61886 * 89.12045 * 20 19 17 38 38 H 1.08998 * 113.61879 * 270.88747 * 21 20 19 39 39 H 1.08999 * 113.61887 * 139.97854 * 21 20 19 40 40 H 1.08999 * 109.46097 * 58.27551 * 22 12 11 41 41 H 1.09001 * 109.45675 * 178.24530 * 22 12 11 42 42 H 1.09000 * 109.50407 * 299.23804 * 23 22 12 43 43 H 1.09006 * 109.49997 * 179.11931 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2451 -3.6638 0.0005 11 6 1.4752 -4.9850 0.0604 12 7 0.6533 -5.0195 1.2769 13 6 0.0070 -6.3286 1.4387 14 6 -0.6318 -6.4141 2.8264 15 1 -1.3767 -5.6255 2.9326 16 8 0.3770 -6.2541 3.8258 17 6 -1.3044 -7.7778 2.9951 18 8 -2.1416 -8.1256 1.8906 19 6 -0.3336 -8.8966 3.4084 20 6 -1.4437 -9.4074 4.3420 21 6 -1.9802 -7.9664 4.3636 22 6 -0.3405 -3.9383 1.2770 23 6 0.3752 -2.5858 1.2534 24 1 -0.4851 0.8400 -0.0004 25 1 0.6227 -2.5569 -0.8882 26 1 2.8991 -3.5840 0.8690 27 1 2.8430 -3.6319 -0.9102 28 1 2.1805 -5.8160 0.0751 29 1 0.8318 -5.0703 -0.8151 30 1 0.7520 -7.1173 1.3325 31 1 -0.7624 -6.4507 0.6764 32 1 1.0746 -6.9230 3.7911 33 1 -2.5560 -8.9958 1.9697 34 1 -0.0920 -9.5859 2.5994 35 1 0.5492 -8.5358 3.9363 36 1 -1.0770 -9.7513 5.3091 37 1 -2.1205 -10.1182 3.8677 38 1 -1.5476 -7.3512 5.1526 39 1 -3.0677 -7.9046 4.3257 40 1 -0.9754 -4.0286 0.3956 41 1 -0.9539 -4.0090 2.1752 42 1 0.9998 -2.4891 2.1415 43 1 -0.3628 -1.7838 1.2377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332848012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:58 Heat of formation + Delta-G solvation = -80.032594 kcal Electronic energy + Delta-G solvation = -21796.460860 eV Core-core repulsion = 18648.975228 eV Total energy + Delta-G solvation = -3147.485632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.50777 -38.15240 -36.22319 -34.50715 -33.64413 -31.43823 -29.70862 -28.91839 -26.24092 -25.82864 -24.08492 -22.39850 -21.76591 -20.66883 -19.80153 -18.49078 -17.39697 -16.69588 -16.28140 -15.62410 -15.34192 -14.98036 -14.53872 -14.35383 -13.84754 -13.59597 -13.28113 -13.05012 -12.78874 -12.47144 -12.38859 -12.15308 -11.66407 -11.39320 -11.29234 -11.21391 -11.18068 -10.89498 -10.78497 -10.65008 -10.42525 -10.12209 -9.92795 -9.88590 -9.55121 -9.32534 -8.87373 -8.59928 -8.21916 -7.60182 -5.90066 -3.95198 3.36030 3.42577 3.46469 3.81691 4.13208 4.19485 4.33025 4.46960 4.51188 4.55358 4.90092 5.16509 5.29898 5.38189 5.41499 5.43798 5.50966 5.57553 5.68959 5.72688 5.81720 5.91263 6.02448 6.08306 6.13709 6.22122 6.33997 6.40374 6.71529 6.72966 6.94393 7.16749 7.26913 7.37829 7.53625 7.67475 7.76104 7.81326 7.93590 8.14482 8.24921 8.56443 9.08485 9.68758 11.16132 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040761 B = 0.003920 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.758427 B = 7141.147652 C = 7281.790090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.105 4.105 11 C 0.061 3.939 12 N -0.526 5.526 13 C 0.030 3.970 14 C 0.136 3.864 15 H 0.107 0.893 16 O -0.533 6.533 17 C 0.082 3.918 18 O -0.534 6.534 19 C -0.174 4.174 20 C -0.145 4.145 21 C -0.165 4.165 22 C 0.057 3.943 23 C -0.102 4.102 24 H 0.258 0.742 25 H 0.019 0.981 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.021 0.979 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.367 0.633 33 H 0.375 0.625 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 -19.127 6.870 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.067 4.067 12 N -0.251 5.251 13 C -0.099 4.099 14 C 0.076 3.924 15 H 0.125 0.875 16 O -0.339 6.339 17 C 0.040 3.960 18 O -0.339 6.339 19 C -0.212 4.212 20 C -0.182 4.182 21 C -0.202 4.202 22 C -0.070 4.070 23 C -0.140 4.140 24 H 0.068 0.932 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.215 0.785 33 H 0.223 0.777 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.427 -17.815 7.216 19.525 hybrid contribution -0.040 -0.402 -0.685 0.795 sum -3.467 -18.218 6.531 19.661 Atomic orbital electron populations 1.69883 1.05856 1.26210 1.51206 1.24968 0.94827 0.98962 0.95283 0.86638 0.79941 0.83733 0.77931 1.20876 1.21321 1.19963 1.21217 0.92858 0.90715 1.49942 0.92795 1.18684 0.92717 0.91712 0.93995 1.21667 0.98699 0.93787 1.00167 1.22107 0.95674 0.99150 0.89737 1.61964 1.23601 1.01625 1.37930 1.22609 0.97828 0.92845 0.96589 1.21517 0.89782 0.93354 0.87772 0.87540 1.86707 1.36953 1.55804 1.54436 1.23058 0.91190 0.95484 0.86304 1.86526 1.64645 1.39872 1.42853 1.23723 0.98538 0.98786 1.00133 1.22832 0.98198 0.96776 1.00444 1.23681 1.01060 0.96887 0.98613 1.22300 0.93135 0.93181 0.98417 1.21632 1.00120 0.92957 0.99332 0.93166 0.96265 0.92471 0.93336 0.92735 0.96027 0.91587 0.93797 0.78485 0.77744 0.90729 0.88749 0.90891 0.90375 0.88258 0.90947 0.96203 0.92616 0.93752 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 11.37 55.43 0.63 -25.40 16 2 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.38 8.56 -34.44 -0.29 -14.67 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.22 2.16 -91.65 -0.20 1.03 16 10 C -0.11 -2.30 5.32 -26.66 -0.14 -2.45 16 11 C 0.06 1.15 5.46 -3.83 -0.02 1.13 16 12 N -0.53 -9.82 4.52 -234.67 -1.06 -10.88 16 13 C 0.03 0.46 4.38 -3.83 -0.02 0.44 16 14 C 0.14 1.85 2.79 -26.74 -0.07 1.77 16 15 H 0.11 1.65 6.43 -51.93 -0.33 1.32 16 16 O -0.53 -7.32 12.47 -35.23 -0.44 -7.75 16 17 C 0.08 0.86 1.40 -89.81 -0.13 0.73 16 18 O -0.53 -5.77 12.63 -35.23 -0.45 -6.22 16 19 C -0.17 -1.43 7.19 -25.92 -0.19 -1.61 16 20 C -0.15 -1.04 7.75 -25.92 -0.20 -1.24 16 21 C -0.16 -1.51 7.35 -25.92 -0.19 -1.70 16 22 C 0.06 1.19 5.29 -3.83 -0.02 1.17 16 23 C -0.10 -2.53 5.12 -26.65 -0.14 -2.66 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.90 8.02 -51.93 -0.42 0.49 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.91 7.99 -51.93 -0.41 0.49 16 31 H 0.04 0.72 7.60 -51.93 -0.39 0.32 16 32 H 0.37 3.85 6.81 45.56 0.31 4.16 16 33 H 0.38 2.53 8.32 45.56 0.38 2.91 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.72 5.90 -51.93 -0.31 0.42 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.46 7.79 -51.93 -0.40 0.05 16 38 H 0.10 0.99 7.77 -51.93 -0.40 0.59 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.10 6.21 -51.93 -0.32 0.78 16 42 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.09 2.48 6.18 -51.93 -0.32 2.16 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -30.87 328.29 -9.06 -39.93 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.97 Total: 5.10 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -1.70 Total: -16.46 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.43 Total: -36.28 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.88 Total: -13.97 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.87 -9.06 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332848012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.102 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds