Wall clock time and date at job start Mon Mar 30 2020 01:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99701 * 2 1 4 4 H 1.48501 * 109.47088 * 89.99738 * 3 2 1 5 5 H 1.48493 * 109.46961 * 209.99734 * 3 2 1 6 6 H 1.48501 * 109.46791 * 330.00142 * 3 2 1 7 7 C 1.37876 * 120.00340 * 179.72073 * 2 1 3 8 8 H 1.08001 * 119.99952 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99901 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47376 * 300.00266 * 9 7 2 11 11 O 1.42904 * 109.46829 * 59.99673 * 9 7 2 12 12 C 1.53000 * 109.47118 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.46990 * 178.74124 * 12 9 7 14 14 C 1.40460 * 110.99909 * 163.63479 * 13 12 9 15 15 C 1.54213 * 111.79578 * 188.24978 * 14 13 12 16 16 O 1.40618 * 109.14761 * 282.48604 * 15 14 13 17 17 C 1.44080 * 116.62905 * 93.92369 * 16 15 14 18 18 C 1.53643 * 112.49834 * 318.19218 * 17 16 15 19 19 C 1.54281 * 108.73092 * 196.62830 * 18 17 16 20 20 C 1.54888 * 104.20682 * 219.19787 * 19 18 17 21 21 C 1.54891 * 102.74945 * 37.94980 * 20 19 18 22 22 C 1.53917 * 108.86797 * 80.89391 * 18 17 16 23 23 C 1.47665 * 110.99910 * 291.82192 * 13 12 9 24 24 H 0.96999 * 119.99714 * 179.97438 * 1 2 3 25 25 H 0.96703 * 114.00267 * 59.99923 * 11 9 7 26 26 H 1.08999 * 109.46808 * 298.74052 * 12 9 7 27 27 H 1.08994 * 109.47105 * 58.73857 * 12 9 7 28 28 H 1.08995 * 109.02078 * 308.85148 * 14 13 12 29 29 H 1.09006 * 109.01390 * 67.73854 * 14 13 12 30 30 H 1.09005 * 109.52161 * 42.38782 * 15 14 13 31 31 H 1.08999 * 109.52594 * 162.58113 * 15 14 13 32 32 H 1.09000 * 108.87280 * 78.96329 * 17 16 15 33 33 H 1.08994 * 108.87993 * 197.41028 * 17 16 15 34 34 H 1.08994 * 110.48138 * 337.87597 * 19 18 17 35 35 H 1.08998 * 110.48658 * 100.51554 * 19 18 17 36 36 H 1.09004 * 110.75406 * 279.63838 * 20 19 18 37 37 H 1.08998 * 110.91462 * 156.34035 * 20 19 18 38 38 H 1.08996 * 110.48427 * 203.35824 * 21 20 19 39 39 H 1.08998 * 110.48254 * 80.71395 * 21 20 19 40 40 H 1.09001 * 110.03392 * 236.37510 * 22 18 17 41 41 H 1.08997 * 110.03294 * 357.80547 * 22 18 17 42 42 H 1.09006 * 109.58116 * 273.74570 * 23 13 12 43 43 H 1.08998 * 109.57947 * 34.13981 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4464 2.6527 -0.7000 7 6 2.0046 -1.1940 0.0058 8 1 3.0846 -1.1939 0.0054 9 6 1.2512 -2.4991 0.0116 10 1 0.6241 -2.5528 0.9015 11 8 0.4300 -2.5802 -1.1551 12 6 2.2454 -3.6620 0.0167 13 7 1.5112 -4.9339 0.0528 14 6 2.3430 -6.0057 -0.3106 15 6 1.5479 -7.3165 -0.4776 16 8 1.2595 -7.8460 0.7928 17 6 -0.0146 -7.4932 1.3654 18 6 -0.3684 -6.0142 1.1463 19 6 -1.5001 -5.6259 2.1204 20 6 -2.4173 -4.6972 1.2865 21 6 -2.3896 -5.3575 -0.1143 22 6 -0.9342 -5.8430 -0.2748 23 6 0.8243 -5.1118 1.3478 24 1 -0.4850 -0.8401 -0.0004 25 1 0.9224 -2.5386 -1.9864 26 1 2.8571 -3.6210 -0.8845 27 1 2.8869 -3.5877 0.8948 28 1 2.8377 -5.7680 -1.2523 29 1 3.0991 -6.1463 0.4619 30 1 0.6173 -7.1130 -1.0073 31 1 2.1419 -8.0332 -1.0447 32 1 -0.7887 -8.1119 0.9114 33 1 0.0121 -7.6945 2.4363 34 1 -2.0465 -6.5121 2.4429 35 1 -1.0966 -5.0914 2.9803 36 1 -2.0097 -3.6871 1.2456 37 1 -3.4302 -4.6874 1.6890 38 1 -2.6354 -4.6271 -0.8852 39 1 -3.0794 -6.2005 -0.1523 40 1 -0.3516 -5.1018 -0.8219 41 1 -0.9149 -6.7969 -0.8018 42 1 1.5086 -5.5653 2.0650 43 1 0.4908 -4.1433 1.7205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332922652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:38 Heat of formation + Delta-G solvation = -92.746951 kcal Electronic energy + Delta-G solvation = -23014.923557 eV Core-core repulsion = 19866.886589 eV Total energy + Delta-G solvation = -3148.036968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.44101 -36.98595 -36.75294 -34.95989 -32.04715 -31.23239 -29.56335 -28.42676 -27.07328 -26.35700 -24.17010 -22.88687 -21.27103 -20.78235 -20.04309 -18.56645 -17.32150 -16.53963 -16.18774 -15.43669 -15.16976 -14.65841 -14.52145 -14.16428 -13.83180 -13.71556 -13.60442 -13.22388 -12.85382 -12.38034 -12.20990 -11.91923 -11.80806 -11.37018 -11.00794 -10.93496 -10.81134 -10.76412 -10.66523 -10.35865 -10.24908 -10.13022 -10.09703 -9.97121 -9.75514 -9.39609 -9.14864 -8.44817 -8.01438 -7.55340 -6.33989 -4.17385 3.41257 3.44187 3.60342 3.92932 4.28787 4.53290 4.72407 4.86553 4.94676 5.22179 5.32399 5.36847 5.40882 5.49933 5.52625 5.57693 5.68576 5.74168 5.81084 5.85764 5.94131 6.01121 6.02485 6.08159 6.11900 6.18254 6.24780 6.30578 6.36832 6.39884 6.51139 6.61772 6.64426 6.67481 7.11539 7.40570 7.50168 7.57670 7.88873 8.05014 8.37327 8.87982 9.23278 9.68648 11.06309 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023944 B = 0.006264 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.133427 B = 4468.688811 C = 5126.272497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.036 3.964 3 Si 1.067 2.933 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.653 4.653 8 H 0.047 0.953 9 C 0.224 3.776 10 H 0.047 0.953 11 O -0.569 6.569 12 C 0.042 3.958 13 N -0.540 5.540 14 C 0.044 3.956 15 C 0.051 3.949 16 O -0.392 6.392 17 C 0.074 3.926 18 C -0.089 4.089 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.121 4.121 23 C 0.079 3.921 24 H 0.285 0.715 25 H 0.349 0.651 26 H 0.063 0.937 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.020 0.980 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.119 0.881 41 H 0.048 0.952 42 H 0.033 0.967 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 -13.466 0.868 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.173 4.173 3 Si 0.896 3.104 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.691 4.691 8 H 0.065 0.935 9 C 0.167 3.833 10 H 0.065 0.935 11 O -0.372 6.372 12 C -0.084 4.084 13 N -0.263 5.263 14 C -0.086 4.086 15 C -0.027 4.027 16 O -0.311 6.311 17 C -0.002 4.002 18 C -0.090 4.090 19 C -0.149 4.149 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.048 4.048 24 H 0.097 0.903 25 H 0.193 0.807 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.038 0.962 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.137 0.863 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.966 -12.002 1.086 12.211 hybrid contribution 1.317 -1.539 0.198 2.035 sum -0.649 -13.542 1.284 13.618 Atomic orbital electron populations 1.70602 1.06863 1.32360 1.42869 1.25717 0.96509 1.02277 0.92780 0.83598 0.74732 0.75400 0.76709 1.21523 1.21590 1.20974 1.22482 0.94341 0.92748 1.59542 0.93516 1.19465 0.88175 0.90020 0.85681 0.93503 1.86464 1.38672 1.96448 1.15653 1.22892 0.96687 0.89142 0.99723 1.59156 1.33494 1.02694 1.30951 1.21586 0.94640 0.92106 1.00257 1.22815 1.00493 0.93948 0.85398 1.87446 1.37145 1.72393 1.34075 1.23155 0.84941 0.94223 0.97918 1.21580 0.95966 0.94119 0.97295 1.22420 0.95863 0.99154 0.97500 1.22442 0.98541 0.99695 0.95206 1.22315 0.96958 0.99235 0.97323 1.22699 0.95782 1.01845 0.95481 1.21752 0.94184 0.99499 0.89394 0.90272 0.80654 0.91879 0.95441 0.90843 0.96238 0.90470 0.90159 0.93353 0.90192 0.91926 0.91701 0.90694 0.92307 0.91626 0.93162 0.86270 0.93326 0.94875 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.53 55.43 0.75 -25.98 16 2 C 0.04 1.02 5.40 -17.82 -0.10 0.92 16 3 Si 1.07 24.86 29.90 -169.99 -5.08 19.78 16 4 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.65 -17.82 8.76 -34.44 -0.30 -18.12 16 8 H 0.05 1.27 7.74 -52.49 -0.41 0.87 16 9 C 0.22 5.42 2.40 -27.88 -0.07 5.36 16 10 H 0.05 1.24 6.18 -51.93 -0.32 0.92 16 11 O -0.57 -13.69 11.65 -35.23 -0.41 -14.11 16 12 C 0.04 0.86 4.53 -3.82 -0.02 0.84 16 13 N -0.54 -9.41 1.96 -239.57 -0.47 -9.87 16 14 C 0.04 0.68 5.11 -6.53 -0.03 0.65 16 15 C 0.05 0.70 6.38 37.79 0.24 0.94 16 16 O -0.39 -5.84 10.15 -34.26 -0.35 -6.19 16 17 C 0.07 0.98 5.38 37.49 0.20 1.19 16 18 C -0.09 -1.29 0.60 -154.07 -0.09 -1.38 16 19 C -0.11 -1.49 5.63 -25.06 -0.14 -1.63 16 20 C -0.12 -1.78 6.91 -24.74 -0.17 -1.95 16 21 C -0.12 -1.75 6.83 -25.08 -0.17 -1.92 16 22 C -0.12 -1.82 4.20 -25.60 -0.11 -1.93 16 23 C 0.08 1.34 4.33 -4.45 -0.02 1.32 16 24 H 0.29 8.66 6.47 -40.82 -0.26 8.39 16 25 H 0.35 7.75 9.04 45.56 0.41 8.16 16 26 H 0.06 1.26 7.73 -51.93 -0.40 0.85 16 27 H 0.03 0.58 8.10 -51.93 -0.42 0.16 16 28 H 0.07 1.07 7.76 -51.93 -0.40 0.67 16 29 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.08 1.07 4.31 -51.93 -0.22 0.84 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.59 7.72 -51.93 -0.40 0.19 16 33 H 0.08 0.98 7.99 -51.93 -0.41 0.57 16 34 H 0.06 0.72 7.78 -51.93 -0.40 0.32 16 35 H 0.06 0.87 7.73 -51.93 -0.40 0.47 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.12 2.16 5.90 -51.93 -0.31 1.85 16 41 H 0.05 0.68 5.65 -51.93 -0.29 0.39 16 42 H 0.03 0.57 7.66 -51.93 -0.40 0.17 16 43 H 0.08 1.60 5.54 -51.93 -0.29 1.31 16 LS Contribution 317.09 15.07 4.78 4.78 Total: -1.00 -29.27 317.09 -7.82 -37.09 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.26 Total: 10.22 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -0.78 Total: -15.73 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.28 Total: -35.85 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.76 Total: -20.29 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.27 -7.82 -37.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332922652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.655 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds