Wall clock time and date at job start Mon Mar 30 2020 01:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99701 * 2 1 4 4 H 1.48501 * 109.47088 * 89.99738 * 3 2 1 5 5 H 1.48493 * 109.46961 * 209.99734 * 3 2 1 6 6 H 1.48501 * 109.46791 * 330.00142 * 3 2 1 7 7 C 1.37876 * 120.00340 * 179.72073 * 2 1 3 8 8 H 1.08001 * 119.99952 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99901 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47376 * 300.00266 * 9 7 2 11 11 O 1.42904 * 109.46829 * 59.99673 * 9 7 2 12 12 C 1.53000 * 109.47118 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.46990 * 178.74124 * 12 9 7 14 14 C 1.40460 * 110.99909 * 163.63479 * 13 12 9 15 15 C 1.54213 * 111.79578 * 188.24978 * 14 13 12 16 16 O 1.40618 * 109.14761 * 282.48604 * 15 14 13 17 17 C 1.44080 * 116.62905 * 93.92369 * 16 15 14 18 18 C 1.53643 * 112.49834 * 318.19218 * 17 16 15 19 19 C 1.54281 * 108.73092 * 196.62830 * 18 17 16 20 20 C 1.54888 * 104.20682 * 219.19787 * 19 18 17 21 21 C 1.54891 * 102.74945 * 37.94980 * 20 19 18 22 22 C 1.53917 * 108.86797 * 80.89391 * 18 17 16 23 23 C 1.47665 * 110.99910 * 291.82192 * 13 12 9 24 24 H 0.96999 * 119.99714 * 179.97438 * 1 2 3 25 25 H 0.96703 * 114.00267 * 59.99923 * 11 9 7 26 26 H 1.08999 * 109.46808 * 298.74052 * 12 9 7 27 27 H 1.08994 * 109.47105 * 58.73857 * 12 9 7 28 28 H 1.08995 * 109.02078 * 308.85148 * 14 13 12 29 29 H 1.09006 * 109.01390 * 67.73854 * 14 13 12 30 30 H 1.09005 * 109.52161 * 42.38782 * 15 14 13 31 31 H 1.08999 * 109.52594 * 162.58113 * 15 14 13 32 32 H 1.09000 * 108.87280 * 78.96329 * 17 16 15 33 33 H 1.08994 * 108.87993 * 197.41028 * 17 16 15 34 34 H 1.08994 * 110.48138 * 337.87597 * 19 18 17 35 35 H 1.08998 * 110.48658 * 100.51554 * 19 18 17 36 36 H 1.09004 * 110.75406 * 279.63838 * 20 19 18 37 37 H 1.08998 * 110.91462 * 156.34035 * 20 19 18 38 38 H 1.08996 * 110.48427 * 203.35824 * 21 20 19 39 39 H 1.08998 * 110.48254 * 80.71395 * 21 20 19 40 40 H 1.09001 * 110.03392 * 236.37510 * 22 18 17 41 41 H 1.08997 * 110.03294 * 357.80547 * 22 18 17 42 42 H 1.09006 * 109.58116 * 273.74570 * 23 13 12 43 43 H 1.08998 * 109.57947 * 34.13981 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4464 2.6527 -0.7000 7 6 2.0046 -1.1940 0.0058 8 1 3.0846 -1.1939 0.0054 9 6 1.2512 -2.4991 0.0116 10 1 0.6241 -2.5528 0.9015 11 8 0.4300 -2.5802 -1.1551 12 6 2.2454 -3.6620 0.0167 13 7 1.5112 -4.9339 0.0528 14 6 2.3430 -6.0057 -0.3106 15 6 1.5479 -7.3165 -0.4776 16 8 1.2595 -7.8460 0.7928 17 6 -0.0146 -7.4932 1.3654 18 6 -0.3684 -6.0142 1.1463 19 6 -1.5001 -5.6259 2.1204 20 6 -2.4173 -4.6972 1.2865 21 6 -2.3896 -5.3575 -0.1143 22 6 -0.9342 -5.8430 -0.2748 23 6 0.8243 -5.1118 1.3478 24 1 -0.4850 -0.8401 -0.0004 25 1 0.9224 -2.5386 -1.9864 26 1 2.8571 -3.6210 -0.8845 27 1 2.8869 -3.5877 0.8948 28 1 2.8377 -5.7680 -1.2523 29 1 3.0991 -6.1463 0.4619 30 1 0.6173 -7.1130 -1.0073 31 1 2.1419 -8.0332 -1.0447 32 1 -0.7887 -8.1119 0.9114 33 1 0.0121 -7.6945 2.4363 34 1 -2.0465 -6.5121 2.4429 35 1 -1.0966 -5.0914 2.9803 36 1 -2.0097 -3.6871 1.2456 37 1 -3.4302 -4.6874 1.6890 38 1 -2.6354 -4.6271 -0.8852 39 1 -3.0794 -6.2005 -0.1523 40 1 -0.3516 -5.1018 -0.8219 41 1 -0.9149 -6.7969 -0.8018 42 1 1.5086 -5.5653 2.0650 43 1 0.4908 -4.1433 1.7205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332922652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:37 Heat of formation + Delta-G solvation = -112.144486 kcal Electronic energy + Delta-G solvation = -23015.764697 eV Core-core repulsion = 19866.886589 eV Total energy + Delta-G solvation = -3148.878108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68464 -38.61592 -37.93180 -36.64651 -34.19803 -32.42499 -31.15356 -29.61412 -28.62713 -27.65199 -25.96662 -24.29695 -22.68596 -22.33953 -21.31564 -19.79813 -19.36195 -17.78047 -17.53052 -17.01907 -16.37226 -16.15641 -15.90815 -15.67838 -15.60244 -15.29239 -14.97801 -14.63128 -14.24375 -13.99968 -13.77765 -13.49950 -13.18132 -12.71197 -12.59988 -12.49904 -12.31062 -12.05855 -11.96250 -11.94133 -11.82723 -11.54665 -11.48476 -11.30451 -11.12334 -10.89862 -10.60250 -10.50205 -10.00701 -9.02705 -8.59297 -6.44176 1.51926 1.59880 1.77834 2.54494 2.83575 2.95596 3.19217 3.56872 3.67248 3.76483 3.97629 4.06186 4.17543 4.18374 4.26032 4.34422 4.42764 4.43887 4.49242 4.59542 4.64050 4.65876 4.76835 4.78921 4.83865 4.90338 4.92808 5.00893 5.04764 5.09604 5.17236 5.29792 5.41697 5.43622 5.50663 5.82449 5.86649 6.04324 6.19979 6.36253 6.51587 6.60603 7.28372 7.53711 8.78483 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023944 B = 0.006264 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.133427 B = 4468.688811 C = 5126.272497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.014 4.014 3 Si 1.115 2.885 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.284 1.284 7 C -0.664 4.664 8 H 0.045 0.955 9 C 0.231 3.769 10 H 0.017 0.983 11 O -0.575 6.575 12 C 0.058 3.942 13 N -0.536 5.536 14 C 0.040 3.960 15 C 0.056 3.944 16 O -0.404 6.404 17 C 0.074 3.926 18 C -0.086 4.086 19 C -0.106 4.106 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.117 4.117 23 C 0.082 3.918 24 H 0.269 0.731 25 H 0.357 0.643 26 H 0.070 0.930 27 H 0.016 0.984 28 H 0.084 0.916 29 H 0.011 0.989 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.030 0.970 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.030 0.970 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 -15.275 0.699 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.217 4.217 3 Si 0.937 3.063 4 H -0.202 1.202 5 H -0.196 1.196 6 H -0.210 1.210 7 C -0.702 4.702 8 H 0.064 0.936 9 C 0.173 3.827 10 H 0.034 0.966 11 O -0.379 6.379 12 C -0.070 4.070 13 N -0.259 5.259 14 C -0.090 4.090 15 C -0.020 4.020 16 O -0.323 6.323 17 C -0.001 4.001 18 C -0.087 4.087 19 C -0.144 4.144 20 C -0.160 4.160 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.045 4.045 24 H 0.080 0.920 25 H 0.202 0.798 26 H 0.088 0.912 27 H 0.034 0.966 28 H 0.102 0.898 29 H 0.029 0.971 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.692 -13.840 0.917 13.973 hybrid contribution 1.238 -0.997 0.248 1.609 sum -0.454 -14.837 1.165 14.890 Atomic orbital electron populations 1.70739 1.07909 1.31367 1.45449 1.27184 0.96519 1.06178 0.91785 0.82974 0.74246 0.71528 0.77532 1.20199 1.19554 1.20962 1.22885 0.94512 0.94222 1.58549 0.93618 1.19224 0.87998 0.90783 0.84666 0.96569 1.86432 1.38936 1.96504 1.15994 1.22536 0.95434 0.89572 0.99443 1.59163 1.33365 1.02170 1.31198 1.21728 0.94552 0.92381 1.00304 1.22843 1.00620 0.93272 0.85313 1.87440 1.37983 1.72335 1.34522 1.23246 0.85026 0.92839 0.99022 1.21534 0.94965 0.94830 0.97324 1.22417 0.95335 0.99902 0.96710 1.22400 0.99681 0.97710 0.96215 1.22309 0.97301 0.99641 0.96303 1.22595 0.95589 1.01706 0.95541 1.21711 0.95248 0.98497 0.89064 0.92004 0.79756 0.91197 0.96616 0.89814 0.97141 0.90373 0.87515 0.91211 0.88843 0.88702 0.92367 0.95088 0.90340 0.93655 0.90237 0.89538 0.91479 0.95166 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.70 13.53 21.45 0.29 -56.41 16 2 C -0.01 -0.81 5.40 84.65 0.46 -0.35 16 3 Si 1.12 50.08 29.90 68.60 2.05 52.13 16 4 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.66 -36.99 8.76 25.60 0.22 -36.76 16 8 H 0.05 2.51 7.74 -2.91 -0.02 2.48 16 9 C 0.23 11.64 2.40 29.85 0.07 11.71 16 10 H 0.02 0.94 6.18 -2.39 -0.01 0.92 16 11 O -0.57 -28.73 11.65 -148.98 -1.74 -30.47 16 12 C 0.06 2.40 4.53 86.30 0.39 2.79 16 13 N -0.54 -18.81 1.96 -911.86 -1.79 -20.59 16 14 C 0.04 1.19 5.11 87.88 0.45 1.63 16 15 C 0.06 1.40 6.38 72.39 0.46 1.86 16 16 O -0.40 -10.87 10.15 -145.51 -1.48 -12.34 16 17 C 0.07 1.75 5.38 72.20 0.39 2.14 16 18 C -0.09 -2.39 0.60 -51.90 -0.03 -2.42 16 19 C -0.11 -2.70 5.63 31.67 0.18 -2.52 16 20 C -0.12 -3.59 6.91 31.89 0.22 -3.37 16 21 C -0.12 -3.31 6.83 31.67 0.22 -3.10 16 22 C -0.12 -3.40 4.20 31.33 0.13 -3.27 16 23 C 0.08 2.84 4.33 85.48 0.37 3.21 16 24 H 0.27 17.14 6.47 -92.71 -0.60 16.54 16 25 H 0.36 16.26 9.04 -74.06 -0.67 15.59 16 26 H 0.07 2.79 7.73 -2.39 -0.02 2.77 16 27 H 0.02 0.68 8.10 -2.39 -0.02 0.66 16 28 H 0.08 2.30 7.76 -2.39 -0.02 2.29 16 29 H 0.01 0.34 8.09 -2.38 -0.02 0.32 16 30 H 0.08 1.94 4.31 -2.38 -0.01 1.93 16 31 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.07 1.40 7.72 -2.39 -0.02 1.38 16 33 H 0.09 1.97 7.99 -2.39 -0.02 1.95 16 34 H 0.09 1.85 7.78 -2.39 -0.02 1.83 16 35 H 0.06 1.56 7.73 -2.39 -0.02 1.54 16 36 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.09 3.15 5.90 -2.39 -0.01 3.13 16 41 H 0.07 1.69 5.65 -2.39 -0.01 1.68 16 42 H 0.03 1.05 7.66 -2.38 -0.02 1.03 16 43 H 0.05 2.08 5.54 -2.39 -0.01 2.07 16 Total: -1.00 -64.61 317.09 1.37 -63.24 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.50 Total: 32.88 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 3.53 Total: -28.44 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -1.50 Total: -77.00 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -3.21 Total: -42.81 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.13 kcal Total: -64.61 1.37 -63.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332922652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.909 kcal (2) G-P(sol) polarization free energy of solvation -64.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds