Wall clock time and date at job start Mon Mar 30 2020 00:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99824 * 2 1 4 4 C 1.53001 * 109.46984 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47150 * 65.00412 * 4 3 2 6 6 C 1.36923 * 120.00112 * 84.69082 * 5 4 3 7 7 H 1.07995 * 120.00493 * 231.15805 * 6 5 4 8 8 C 1.38806 * 119.99695 * 51.15861 * 6 5 4 9 9 N 1.31561 * 120.00292 * 8.85574 * 8 6 5 10 10 Si 1.86803 * 120.00032 * 188.85459 * 8 6 5 11 11 H 1.48493 * 109.47279 * 89.99734 * 10 8 6 12 12 H 1.48499 * 109.47106 * 210.00437 * 10 8 6 13 13 H 1.48506 * 109.47003 * 329.99930 * 10 8 6 14 14 C 1.38228 * 119.99640 * 264.69648 * 5 4 3 15 15 N 1.31561 * 126.45837 * 5.90088 * 14 5 4 16 16 N 1.28420 * 110.49640 * 180.02562 * 15 14 5 17 17 N 1.28901 * 110.35238 * 0.02562 * 16 15 14 18 18 N 1.35439 * 126.45385 * 185.59397 * 14 5 4 19 19 C 1.46501 * 127.38896 * 359.96046 * 18 14 5 20 20 C 1.52995 * 109.46994 * 83.19140 * 19 18 14 21 21 C 1.52998 * 109.47289 * 65.00320 * 20 19 18 22 22 C 1.53003 * 109.47047 * 185.00152 * 20 19 18 23 23 H 1.08996 * 109.47416 * 300.00092 * 1 2 3 24 24 H 1.08997 * 109.47158 * 60.00130 * 1 2 3 25 25 H 1.09003 * 109.47192 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46683 * 60.00279 * 3 2 1 27 27 H 1.08997 * 109.47506 * 300.00075 * 3 2 1 28 28 H 1.08997 * 109.46617 * 185.00090 * 4 3 2 29 29 H 1.09001 * 109.47263 * 304.99992 * 4 3 2 30 30 H 0.96993 * 120.00712 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47034 * 203.19407 * 19 18 14 32 32 H 1.09009 * 109.46934 * 323.19174 * 19 18 14 33 33 H 1.09001 * 109.47240 * 304.99876 * 20 19 18 34 34 H 1.09008 * 109.46975 * 299.99868 * 21 20 19 35 35 H 1.09001 * 109.47342 * 59.99618 * 21 20 19 36 36 H 1.08996 * 109.47479 * 179.97438 * 21 20 19 37 37 H 1.09005 * 109.47019 * 59.99989 * 22 20 19 38 38 H 1.08996 * 109.47305 * 180.02562 * 22 20 19 39 39 H 1.09001 * 109.46876 * 299.99948 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.1632 1.3335 -2.3681 7 1 3.7002 1.0510 -3.3019 8 6 4.9476 2.4767 -2.3003 9 7 5.6511 2.7286 -1.2175 10 14 5.0044 3.6576 -3.7466 11 1 3.9387 4.6802 -3.5929 12 1 6.3297 4.3261 -3.7881 13 1 4.7899 2.9051 -5.0088 14 6 4.2045 -0.7982 -1.3040 15 7 3.9638 -1.6690 -0.3476 16 7 4.2912 -2.8523 -0.7240 17 7 4.7572 -2.8277 -1.9256 18 7 4.7123 -1.4890 -2.3525 19 6 5.1289 -0.9551 -3.6516 20 6 6.5543 -0.4094 -3.5453 21 6 7.5200 -1.5591 -3.2517 22 6 6.9440 0.2597 -4.8650 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6885 1.8464 0.8901 27 1 1.6886 1.8465 -0.8899 28 1 3.9783 2.1766 0.0902 29 1 3.8508 0.5686 0.8427 30 1 6.1989 3.5276 -1.1699 31 1 5.0986 -1.7493 -4.3975 32 1 4.4536 -0.1523 -3.9479 33 1 6.6041 0.3220 -2.7386 34 1 7.2424 -2.0358 -2.3115 35 1 7.4702 -2.2905 -4.0584 36 1 8.5356 -1.1705 -3.1765 37 1 6.2559 1.0788 -5.0741 38 1 7.9596 0.6480 -4.7894 39 1 6.8941 -0.4717 -5.6717 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334461804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:17 Heat of formation + Delta-G solvation = 76.105978 kcal Electronic energy + Delta-G solvation = -22430.844733 eV Core-core repulsion = 19218.882185 eV Total energy + Delta-G solvation = -3211.962548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33895 -37.60109 -36.56657 -35.59003 -32.44427 -32.05776 -30.14297 -28.65652 -26.85267 -26.54986 -25.82013 -24.54105 -22.24118 -21.68098 -20.24800 -19.54762 -17.78914 -16.20730 -15.84169 -15.58584 -15.50529 -15.02075 -14.54480 -14.37211 -14.20300 -13.61890 -13.40216 -12.74288 -12.46702 -12.07859 -12.00341 -11.83873 -11.73222 -11.45636 -11.35976 -11.19806 -11.04363 -10.95067 -10.74886 -10.43859 -10.43512 -10.34426 -9.94796 -9.68647 -9.33976 -9.03850 -9.01839 -8.92579 -7.04394 -6.53026 -4.46666 2.58662 2.95191 3.00015 3.04447 3.14812 3.84054 3.94542 4.45763 4.68763 4.71698 5.28107 5.36589 5.58014 5.62736 5.69182 5.71356 5.91716 5.97842 5.98173 6.04601 6.08850 6.14813 6.19336 6.21770 6.25300 6.36975 6.50726 6.57653 6.75536 6.83762 6.91285 7.01019 7.09745 7.16694 7.48301 7.82145 7.97552 8.37574 8.92247 9.33365 10.11255 10.40013 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.010763 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.561086 B = 2600.869908 C = 4046.140952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.368 6.368 3 C 0.046 3.954 4 C 0.144 3.856 5 N -0.407 5.407 6 C -0.333 4.333 7 H 0.084 0.916 8 C 0.057 3.943 9 N -0.855 5.855 10 Si 0.910 3.090 11 H -0.275 1.275 12 H -0.278 1.278 13 H -0.263 1.263 14 C 0.497 3.503 15 N -0.399 5.399 16 N -0.046 5.046 17 N -0.156 5.156 18 N -0.421 5.421 19 C 0.146 3.854 20 C -0.111 4.111 21 C -0.140 4.140 22 C -0.140 4.140 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.274 0.726 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.149 2.050 -3.933 4.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.286 6.286 3 C -0.032 4.032 4 C 0.020 3.980 5 N -0.115 5.115 6 C -0.462 4.462 7 H 0.101 0.899 8 C -0.152 4.152 9 N -0.489 5.489 10 Si 0.735 3.265 11 H -0.200 1.200 12 H -0.204 1.204 13 H -0.188 1.188 14 C 0.137 3.863 15 N -0.268 5.268 16 N -0.043 5.043 17 N -0.145 5.145 18 N -0.225 5.225 19 C 0.023 3.977 20 C -0.130 4.130 21 C -0.197 4.197 22 C -0.198 4.198 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.933 0.944 -3.309 3.947 hybrid contribution -0.046 1.845 -1.346 2.284 sum -1.979 2.789 -4.655 5.777 Atomic orbital electron populations 1.22610 0.83211 1.01710 0.98805 1.88144 1.17631 1.27746 1.95088 1.23154 0.96294 0.84619 0.99124 1.21485 0.89627 1.01006 0.85899 1.41060 1.62149 0.97416 1.10873 1.19211 1.30638 1.06400 0.89908 0.89918 1.25591 0.93265 0.98792 0.97533 1.69873 1.25053 1.26498 1.27456 0.86216 0.78206 0.80556 0.81498 1.20020 1.20356 1.18760 1.22259 0.90097 0.89730 0.84228 1.74704 1.32771 0.94767 1.24602 1.77508 1.06552 1.15426 1.04772 1.82116 1.27778 0.95432 1.09168 1.50628 1.52065 1.05467 1.14330 1.21909 0.96934 0.98439 0.80446 1.21510 0.93628 0.98278 0.99614 1.21774 0.98372 0.97895 1.01685 1.21733 1.01281 1.00300 0.96457 0.95010 0.95085 0.90567 0.93994 0.93248 0.86948 0.91213 0.91552 0.90827 0.87406 0.88377 0.92670 0.93299 0.93452 0.92364 0.92758 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.64 16 2 O -0.37 -7.44 10.37 -35.23 -0.37 -7.80 16 3 C 0.05 0.87 6.25 37.16 0.23 1.11 16 4 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 5 N -0.41 -9.44 2.46 -116.59 -0.29 -9.73 16 6 C -0.33 -7.45 6.38 -15.07 -0.10 -7.54 16 7 H 0.08 1.83 5.75 -52.49 -0.30 1.53 16 8 C 0.06 1.26 4.72 -17.46 -0.08 1.17 16 9 N -0.85 -19.94 11.66 55.49 0.65 -19.29 16 10 Si 0.91 17.25 28.92 -169.99 -4.92 12.33 16 11 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 12 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 13 H -0.26 -4.78 6.93 56.52 0.39 -4.38 16 14 C 0.50 12.08 8.16 -320.35 -2.61 9.46 16 15 N -0.40 -10.12 11.45 30.10 0.34 -9.78 16 16 N -0.05 -1.16 13.38 60.35 0.81 -0.35 16 17 N -0.16 -3.67 13.50 60.35 0.81 -2.86 16 18 N -0.42 -9.52 3.19 -61.85 -0.20 -9.71 16 19 C 0.15 2.77 5.04 -4.04 -0.02 2.75 16 20 C -0.11 -2.00 2.86 -90.62 -0.26 -2.26 16 21 C -0.14 -2.42 9.08 37.16 0.34 -2.08 16 22 C -0.14 -2.11 9.19 37.16 0.34 -1.77 16 23 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.11 2.48 6.04 -51.93 -0.31 2.17 16 29 H 0.07 1.57 7.60 -51.93 -0.39 1.18 16 30 H 0.27 6.11 8.31 -40.82 -0.34 5.77 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.11 2.07 4.88 -51.92 -0.25 1.82 16 33 H 0.10 2.14 6.93 -51.93 -0.36 1.78 16 34 H 0.05 1.10 7.35 -51.92 -0.38 0.72 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.91 7.30 -51.93 -0.38 0.53 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -26.81 319.96 -5.16 -31.97 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.76 Total: 4.84 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -1.07 Total: 5.57 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 2.13 Total: -51.72 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.37 Total: -7.80 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -4.92 Total: 12.33 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.81 -5.16 -31.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334461804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.075 kcal (2) G-P(sol) polarization free energy of solvation -26.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds