Wall clock time and date at job start Mon Mar 30 2020 00:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99824 * 2 1 4 4 C 1.53001 * 109.46984 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47150 * 65.00412 * 4 3 2 6 6 C 1.36923 * 120.00112 * 84.69082 * 5 4 3 7 7 H 1.07995 * 120.00493 * 231.15805 * 6 5 4 8 8 C 1.38806 * 119.99695 * 51.15861 * 6 5 4 9 9 N 1.31561 * 120.00292 * 8.85574 * 8 6 5 10 10 Si 1.86803 * 120.00032 * 188.85459 * 8 6 5 11 11 H 1.48493 * 109.47279 * 89.99734 * 10 8 6 12 12 H 1.48499 * 109.47106 * 210.00437 * 10 8 6 13 13 H 1.48506 * 109.47003 * 329.99930 * 10 8 6 14 14 C 1.38228 * 119.99640 * 264.69648 * 5 4 3 15 15 N 1.31561 * 126.45837 * 5.90088 * 14 5 4 16 16 N 1.28420 * 110.49640 * 180.02562 * 15 14 5 17 17 N 1.28901 * 110.35238 * 0.02562 * 16 15 14 18 18 N 1.35439 * 126.45385 * 185.59397 * 14 5 4 19 19 C 1.46501 * 127.38896 * 359.96046 * 18 14 5 20 20 C 1.52995 * 109.46994 * 83.19140 * 19 18 14 21 21 C 1.52998 * 109.47289 * 65.00320 * 20 19 18 22 22 C 1.53003 * 109.47047 * 185.00152 * 20 19 18 23 23 H 1.08996 * 109.47416 * 300.00092 * 1 2 3 24 24 H 1.08997 * 109.47158 * 60.00130 * 1 2 3 25 25 H 1.09003 * 109.47192 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46683 * 60.00279 * 3 2 1 27 27 H 1.08997 * 109.47506 * 300.00075 * 3 2 1 28 28 H 1.08997 * 109.46617 * 185.00090 * 4 3 2 29 29 H 1.09001 * 109.47263 * 304.99992 * 4 3 2 30 30 H 0.96993 * 120.00712 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47034 * 203.19407 * 19 18 14 32 32 H 1.09009 * 109.46934 * 323.19174 * 19 18 14 33 33 H 1.09001 * 109.47240 * 304.99876 * 20 19 18 34 34 H 1.09008 * 109.46975 * 299.99868 * 21 20 19 35 35 H 1.09001 * 109.47342 * 59.99618 * 21 20 19 36 36 H 1.08996 * 109.47479 * 179.97438 * 21 20 19 37 37 H 1.09005 * 109.47019 * 59.99989 * 22 20 19 38 38 H 1.08996 * 109.47305 * 180.02562 * 22 20 19 39 39 H 1.09001 * 109.46876 * 299.99948 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.1632 1.3335 -2.3681 7 1 3.7002 1.0510 -3.3019 8 6 4.9476 2.4767 -2.3003 9 7 5.6511 2.7286 -1.2175 10 14 5.0044 3.6576 -3.7466 11 1 3.9387 4.6802 -3.5929 12 1 6.3297 4.3261 -3.7881 13 1 4.7899 2.9051 -5.0088 14 6 4.2045 -0.7982 -1.3040 15 7 3.9638 -1.6690 -0.3476 16 7 4.2912 -2.8523 -0.7240 17 7 4.7572 -2.8277 -1.9256 18 7 4.7123 -1.4890 -2.3525 19 6 5.1289 -0.9551 -3.6516 20 6 6.5543 -0.4094 -3.5453 21 6 7.5200 -1.5591 -3.2517 22 6 6.9440 0.2597 -4.8650 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6885 1.8464 0.8901 27 1 1.6886 1.8465 -0.8899 28 1 3.9783 2.1766 0.0902 29 1 3.8508 0.5686 0.8427 30 1 6.1989 3.5276 -1.1699 31 1 5.0986 -1.7493 -4.3975 32 1 4.4536 -0.1523 -3.9479 33 1 6.6041 0.3220 -2.7386 34 1 7.2424 -2.0358 -2.3115 35 1 7.4702 -2.2905 -4.0584 36 1 8.5356 -1.1705 -3.1765 37 1 6.2559 1.0788 -5.0741 38 1 7.9596 0.6480 -4.7894 39 1 6.8941 -0.4717 -5.6717 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334461804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:16 Heat of formation + Delta-G solvation = 61.880904 kcal Electronic energy + Delta-G solvation = -22431.461579 eV Core-core repulsion = 19218.882185 eV Total energy + Delta-G solvation = -3212.579393 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.17312 -39.19136 -38.12025 -37.15885 -34.17454 -33.73917 -31.90815 -30.32439 -28.40523 -27.92755 -27.16859 -26.21364 -23.92986 -23.42159 -21.96022 -21.08317 -19.51687 -17.90806 -17.41681 -17.23603 -17.07949 -16.69938 -16.04593 -15.86915 -15.70944 -15.20520 -14.88056 -14.28470 -14.01465 -13.66281 -13.51444 -13.34713 -13.13253 -13.01927 -12.87680 -12.72982 -12.55858 -12.50727 -12.28346 -12.00079 -11.88371 -11.81617 -11.48027 -11.41227 -11.17032 -10.75098 -10.66868 -10.44882 -8.81624 -8.25436 -6.23657 0.74911 1.36952 1.45082 1.51362 1.57657 2.06327 2.25794 2.93097 3.00058 3.13171 3.76823 3.96012 4.18472 4.19464 4.31662 4.40566 4.44340 4.53698 4.59271 4.62173 4.65809 4.76326 4.80510 4.82782 4.90541 4.95429 4.97816 5.10190 5.18426 5.22180 5.26522 5.36752 5.46156 5.56146 5.78834 6.23134 6.43812 6.62435 7.16885 7.56565 8.25582 8.69447 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.010763 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.561086 B = 2600.869908 C = 4046.140952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.402 6.402 3 C 0.057 3.943 4 C 0.145 3.855 5 N -0.409 5.409 6 C -0.339 4.339 7 H 0.087 0.913 8 C 0.033 3.967 9 N -0.883 5.883 10 Si 0.962 3.038 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.246 1.246 14 C 0.479 3.521 15 N -0.420 5.420 16 N -0.063 5.063 17 N -0.153 5.153 18 N -0.418 5.418 19 C 0.139 3.861 20 C -0.103 4.103 21 C -0.133 4.133 22 C -0.134 4.134 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.105 0.895 29 H 0.051 0.949 30 H 0.275 0.725 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 2.791 -5.849 6.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.322 6.322 3 C -0.021 4.021 4 C 0.021 3.979 5 N -0.117 5.117 6 C -0.467 4.467 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.517 5.517 10 Si 0.785 3.215 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.169 1.169 14 C 0.118 3.882 15 N -0.290 5.290 16 N -0.059 5.059 17 N -0.143 5.143 18 N -0.223 5.223 19 C 0.018 3.982 20 C -0.123 4.123 21 C -0.190 4.190 22 C -0.191 4.191 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.199 1.682 -5.233 5.920 hybrid contribution 0.038 1.613 -0.734 1.772 sum -2.160 3.295 -5.967 7.151 Atomic orbital electron populations 1.22795 0.80825 1.02683 1.00361 1.88089 1.20339 1.28340 1.95387 1.22991 0.94174 0.84612 1.00346 1.21462 0.91803 0.99816 0.84833 1.41353 1.61781 0.97118 1.11478 1.19396 1.31003 1.06393 0.89947 0.89598 1.26176 0.92349 0.99560 0.99293 1.69971 1.25644 1.26965 1.29166 0.85408 0.77780 0.78696 0.79628 1.19989 1.20733 1.16896 1.22470 0.90721 0.90302 0.84667 1.74608 1.33625 0.95102 1.25642 1.77460 1.07463 1.15634 1.05390 1.81991 1.27205 0.96302 1.08813 1.50820 1.51565 1.04834 1.15049 1.22208 0.97432 0.99161 0.79407 1.21395 0.93263 0.97610 1.00062 1.21710 0.98776 0.97911 1.00634 1.21696 1.01610 1.00615 0.95220 0.92700 0.94154 0.89985 0.91179 0.93364 0.87729 0.93081 0.91497 0.88406 0.87509 0.92476 0.96080 0.91132 0.92172 0.92752 0.91787 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.40 -16.07 10.37 -148.98 -1.54 -17.62 16 3 C 0.06 2.10 6.25 71.98 0.45 2.55 16 4 C 0.14 6.33 5.61 86.38 0.48 6.82 16 5 N -0.41 -19.17 2.46 -522.78 -1.29 -20.46 16 6 C -0.34 -15.03 6.38 84.03 0.54 -14.49 16 7 H 0.09 3.72 5.75 -2.91 -0.02 3.70 16 8 C 0.03 1.43 4.72 84.87 0.40 1.83 16 9 N -0.88 -41.35 11.66 21.65 0.25 -41.09 16 10 Si 0.96 33.94 28.92 68.60 1.98 35.92 16 11 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 12 H -0.28 -10.10 7.11 99.48 0.71 -9.39 16 13 H -0.25 -7.93 6.93 99.48 0.69 -7.24 16 14 C 0.48 23.58 8.16 260.63 2.13 25.70 16 15 N -0.42 -21.74 11.45 -58.67 -0.67 -22.42 16 16 N -0.06 -3.21 13.38 37.02 0.50 -2.71 16 17 N -0.15 -7.26 13.50 37.02 0.50 -6.76 16 18 N -0.42 -18.86 3.19 -349.58 -1.11 -19.97 16 19 C 0.14 5.11 5.04 86.38 0.44 5.55 16 20 C -0.10 -3.60 2.86 -10.79 -0.03 -3.63 16 21 C -0.13 -4.41 9.08 71.98 0.65 -3.75 16 22 C -0.13 -3.62 9.19 71.98 0.66 -2.96 16 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.11 4.70 6.04 -2.39 -0.01 4.69 16 29 H 0.05 2.38 7.60 -2.39 -0.02 2.36 16 30 H 0.28 12.28 8.31 -92.71 -0.77 11.51 16 31 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.11 3.95 4.88 -2.38 -0.01 3.93 16 33 H 0.06 2.49 6.93 -2.39 -0.02 2.47 16 34 H 0.02 0.81 7.35 -2.38 -0.02 0.80 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.52 7.30 -2.38 -0.02 1.50 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -57.92 319.96 6.60 -51.32 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 1.03 Total: 24.05 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 6.97 Total: 19.74 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -1.83 Total: -113.41 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -1.54 Total: -17.62 kcal Atomic # 14 Polarization: 33.94 SS G_CDS: 1.98 Total: 35.92 kcal Total: -57.92 6.60 -51.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334461804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.199 kcal (2) G-P(sol) polarization free energy of solvation -57.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds