Wall clock time and date at job start Mon Mar 30 2020 00:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99948 * 2 1 4 4 H 1.48504 * 109.47018 * 89.99515 * 3 2 1 5 5 H 1.48497 * 109.47493 * 209.99560 * 3 2 1 6 6 H 1.48502 * 109.46853 * 329.99914 * 3 2 1 7 7 C 1.37872 * 120.00269 * 180.27406 * 2 1 3 8 8 H 1.08005 * 119.99982 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00485 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.49552 * 299.93662 * 9 7 2 11 11 C 1.53044 * 109.49702 * 59.99882 * 9 7 2 12 12 C 1.53042 * 109.54164 * 181.32301 * 11 9 7 13 13 C 1.53194 * 109.30899 * 298.63418 * 12 11 9 14 14 N 1.46928 * 108.77608 * 54.63123 * 13 12 11 15 15 C 1.34784 * 120.62713 * 126.41223 * 14 13 12 16 16 O 1.21286 * 119.99542 * 174.93940 * 15 14 13 17 17 C 1.50700 * 120.00264 * 354.93701 * 15 14 13 18 18 C 1.52998 * 112.84651 * 291.81670 * 17 15 14 19 19 F 1.39899 * 109.47176 * 305.09123 * 18 17 15 20 20 C 1.53775 * 113.61535 * 160.50573 * 17 15 14 21 21 C 1.53779 * 87.08358 * 220.02134 * 20 17 15 22 22 C 1.53782 * 113.61014 * 63.00907 * 17 15 14 23 23 C 1.46918 * 118.74002 * 306.39401 * 14 13 12 24 24 H 0.96999 * 120.00625 * 359.72614 * 1 2 3 25 25 H 1.09005 * 109.46049 * 301.34097 * 11 9 7 26 26 H 1.09000 * 109.46097 * 61.29850 * 11 9 7 27 27 H 1.09003 * 109.49652 * 58.57995 * 12 11 9 28 28 H 1.08992 * 109.50164 * 178.65118 * 12 11 9 29 29 H 1.08997 * 109.58963 * 174.42250 * 13 12 11 30 30 H 1.08998 * 109.58824 * 294.84575 * 13 12 11 31 31 H 1.09002 * 109.47582 * 65.09463 * 18 17 15 32 32 H 1.09001 * 109.46536 * 185.09911 * 18 17 15 33 33 H 1.09007 * 113.61558 * 334.57324 * 20 17 15 34 34 H 1.09002 * 113.61550 * 105.46726 * 20 17 15 35 35 H 1.08997 * 113.61282 * 270.88492 * 21 20 17 36 36 H 1.08994 * 113.61608 * 139.98125 * 21 20 17 37 37 H 1.08997 * 113.61328 * 254.52889 * 22 17 15 38 38 H 1.09001 * 113.61804 * 25.35177 * 22 17 15 39 39 H 1.08998 * 109.58707 * 293.81848 * 23 14 13 40 40 H 1.09002 * 109.58628 * 173.39640 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4403 -0.6999 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1293 -0.0098 9 6 3.5115 -1.1940 -0.0051 10 1 3.8756 -0.6768 -0.8928 11 6 4.0218 -0.4789 1.2481 12 6 5.5519 -0.4494 1.2333 13 6 6.0863 -1.8851 1.2444 14 7 5.4861 -2.6218 0.1238 15 6 6.2630 -3.2708 -0.7660 16 8 5.7548 -3.9506 -1.6324 17 6 7.7631 -3.1518 -0.6845 18 6 8.2673 -1.7492 -1.0299 19 9 7.7862 -1.3778 -2.2899 20 6 8.5111 -4.2759 -1.4203 21 6 9.4988 -4.2832 -0.2416 22 6 8.3559 -3.7164 0.6173 23 6 4.0229 -2.6380 -0.0080 24 1 -0.4851 0.8400 0.0040 25 1 3.6391 0.5416 1.2651 26 1 3.6774 -1.0105 2.1351 27 1 5.8972 0.0604 0.3338 28 1 5.9141 0.0809 2.1139 29 1 7.1707 -1.8722 1.1342 30 1 5.8183 -2.3675 2.1843 31 1 7.9115 -1.0407 -0.2818 32 1 9.3572 -1.7478 -1.0423 33 1 7.9346 -5.1965 -1.5126 34 1 8.9581 -3.9591 -2.3626 35 1 10.3337 -3.5938 -0.3673 36 1 9.8150 -5.2826 0.0570 37 1 8.6776 -2.9477 1.3199 38 1 7.7364 -4.4829 1.0828 39 1 3.5865 -3.1819 0.8298 40 1 3.7457 -3.1219 -0.9446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334472246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:54 Heat of formation + Delta-G solvation = -66.255757 kcal Electronic energy + Delta-G solvation = -22161.237565 eV Core-core repulsion = 18890.889037 eV Total energy + Delta-G solvation = -3270.348528 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.64931 -40.65649 -38.20061 -36.78896 -33.53109 -31.77051 -30.77253 -28.95297 -26.08300 -25.78818 -24.96353 -23.90748 -21.71750 -20.68959 -19.16112 -18.43336 -17.21869 -16.73851 -16.37778 -16.01312 -15.54939 -15.25197 -14.77113 -14.40026 -14.19098 -13.79833 -13.67392 -13.16661 -12.73117 -12.72019 -12.50547 -12.32696 -12.24160 -11.97433 -11.46251 -11.41069 -11.16157 -11.09273 -10.68878 -10.58436 -10.49291 -10.32554 -10.16051 -9.83901 -9.53552 -9.23375 -8.99678 -8.57277 -8.09659 -6.10047 -4.10107 2.85589 3.22773 3.34574 3.36441 3.38300 4.04680 4.12874 4.38166 4.38730 4.49355 4.69167 4.79202 4.92160 5.08093 5.15089 5.21010 5.28284 5.35763 5.50652 5.51717 5.58328 5.62233 5.78389 5.85630 5.91585 5.94730 6.03483 6.12629 6.19180 6.34178 6.51486 6.66806 6.71839 6.84177 7.12723 7.45934 7.71840 7.83265 8.45614 8.52366 8.93166 9.51561 11.02997 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030023 B = 0.005870 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.398408 B = 4768.972747 C = 4914.651027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.265 1.265 6 H -0.297 1.297 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.005 3.995 10 H 0.031 0.969 11 C -0.121 4.121 12 C -0.142 4.142 13 C 0.104 3.896 14 N -0.604 5.604 15 C 0.528 3.472 16 O -0.538 6.538 17 C -0.147 4.147 18 C 0.088 3.912 19 F -0.206 7.206 20 C -0.107 4.107 21 C -0.143 4.143 22 C -0.119 4.119 23 C 0.129 3.871 24 H 0.264 0.736 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.824 -4.023 4.132 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.190 1.190 6 H -0.225 1.225 7 C -0.552 4.552 8 H 0.094 0.906 9 C -0.015 4.015 10 H 0.049 0.951 11 C -0.159 4.159 12 C -0.180 4.180 13 C -0.019 4.019 14 N -0.337 5.337 15 C 0.315 3.685 16 O -0.415 6.415 17 C -0.150 4.150 18 C 0.033 3.967 19 F -0.186 7.186 20 C -0.145 4.145 21 C -0.181 4.181 22 C -0.157 4.157 23 C 0.008 3.992 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.349 -4.274 3.632 21.108 hybrid contribution 0.209 1.190 0.106 1.213 sum 20.558 -3.084 3.739 21.122 Atomic orbital electron populations 1.69886 1.06262 1.27002 1.50503 1.24968 0.94667 0.98967 0.94344 0.86845 0.80062 0.83619 0.77743 1.20600 1.19044 1.22453 1.20900 0.88267 0.94739 1.51324 0.90593 1.19473 0.96888 0.91467 0.93649 0.95138 1.21976 0.91834 1.00778 1.01290 1.22051 0.99008 0.95453 1.01510 1.21899 0.97481 0.92819 0.89703 1.48271 1.08311 1.50257 1.26811 1.19984 0.87736 0.79575 0.81209 1.90667 1.74952 1.40246 1.35617 1.22793 0.93815 0.97397 1.01025 1.21810 0.99206 0.93413 0.82245 1.92825 1.90267 1.92455 1.43101 1.22774 0.96276 0.97866 0.97549 1.22908 0.96631 1.01852 0.96663 1.22984 0.97549 1.00698 0.94432 1.21774 0.75654 0.99401 1.02398 0.92586 0.93169 0.91884 0.92141 0.91658 0.90343 0.91320 0.89852 0.89813 0.88680 0.90683 0.89837 0.90679 0.90209 0.88892 0.91959 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 2 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 3 Si 0.89 21.92 24.39 -169.99 -4.15 17.77 16 4 H -0.28 -6.59 6.86 56.52 0.39 -6.20 16 5 H -0.27 -6.38 6.52 56.52 0.37 -6.01 16 6 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.51 -14.35 9.14 -34.44 -0.31 -14.67 16 8 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 9 C 0.00 0.11 1.84 -91.65 -0.17 -0.06 16 10 H 0.03 0.77 7.19 -51.93 -0.37 0.40 16 11 C -0.12 -2.46 4.66 -26.69 -0.12 -2.59 16 12 C -0.14 -2.20 6.03 -26.61 -0.16 -2.36 16 13 C 0.10 1.41 5.27 -3.71 -0.02 1.39 16 14 N -0.60 -10.54 2.97 -172.77 -0.51 -11.06 16 15 C 0.53 9.26 6.41 -10.98 -0.07 9.19 16 16 O -0.54 -11.61 15.65 5.55 0.09 -11.52 16 17 C -0.15 -1.82 0.51 -154.85 -0.08 -1.90 16 18 C 0.09 1.01 6.49 37.16 0.24 1.25 16 19 F -0.21 -3.27 17.07 2.25 0.04 -3.23 16 20 C -0.11 -1.20 6.89 -25.92 -0.18 -1.37 16 21 C -0.14 -1.10 7.73 -25.92 -0.20 -1.30 16 22 C -0.12 -1.05 5.68 -25.92 -0.15 -1.20 16 23 C 0.13 2.70 5.64 -3.72 -0.02 2.68 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.05 1.10 3.28 -51.93 -0.17 0.93 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.81 3.05 -51.93 -0.16 0.66 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.88 6.02 -51.93 -0.31 0.56 16 32 H 0.08 0.67 7.32 -51.93 -0.38 0.29 16 33 H 0.09 1.20 7.77 -51.92 -0.40 0.79 16 34 H 0.07 0.83 8.10 -51.93 -0.42 0.40 16 35 H 0.08 0.51 7.61 -51.93 -0.40 0.12 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.54 7.09 -51.93 -0.37 0.17 16 38 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.08 1.97 7.04 -51.93 -0.37 1.60 16 LS Contribution 303.89 15.07 4.58 4.58 Total: -1.00 -33.27 303.89 -6.42 -39.69 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.90 Total: -0.59 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.34 Total: -8.95 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.26 Total: -37.75 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.04 Total: -3.23 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.15 Total: 17.77 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.27 -6.42 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334472246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.564 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds