Wall clock time and date at job start Mon Mar 30 2020 00:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99948 * 2 1 4 4 H 1.48504 * 109.47018 * 89.99515 * 3 2 1 5 5 H 1.48497 * 109.47493 * 209.99560 * 3 2 1 6 6 H 1.48502 * 109.46853 * 329.99914 * 3 2 1 7 7 C 1.37872 * 120.00269 * 180.27406 * 2 1 3 8 8 H 1.08005 * 119.99982 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00485 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.49552 * 299.93662 * 9 7 2 11 11 C 1.53044 * 109.49702 * 59.99882 * 9 7 2 12 12 C 1.53042 * 109.54164 * 181.32301 * 11 9 7 13 13 C 1.53194 * 109.30899 * 298.63418 * 12 11 9 14 14 N 1.46928 * 108.77608 * 54.63123 * 13 12 11 15 15 C 1.34784 * 120.62713 * 126.41223 * 14 13 12 16 16 O 1.21286 * 119.99542 * 174.93940 * 15 14 13 17 17 C 1.50700 * 120.00264 * 354.93701 * 15 14 13 18 18 C 1.52998 * 112.84651 * 291.81670 * 17 15 14 19 19 F 1.39899 * 109.47176 * 305.09123 * 18 17 15 20 20 C 1.53775 * 113.61535 * 160.50573 * 17 15 14 21 21 C 1.53779 * 87.08358 * 220.02134 * 20 17 15 22 22 C 1.53782 * 113.61014 * 63.00907 * 17 15 14 23 23 C 1.46918 * 118.74002 * 306.39401 * 14 13 12 24 24 H 0.96999 * 120.00625 * 359.72614 * 1 2 3 25 25 H 1.09005 * 109.46049 * 301.34097 * 11 9 7 26 26 H 1.09000 * 109.46097 * 61.29850 * 11 9 7 27 27 H 1.09003 * 109.49652 * 58.57995 * 12 11 9 28 28 H 1.08992 * 109.50164 * 178.65118 * 12 11 9 29 29 H 1.08997 * 109.58963 * 174.42250 * 13 12 11 30 30 H 1.08998 * 109.58824 * 294.84575 * 13 12 11 31 31 H 1.09002 * 109.47582 * 65.09463 * 18 17 15 32 32 H 1.09001 * 109.46536 * 185.09911 * 18 17 15 33 33 H 1.09007 * 113.61558 * 334.57324 * 20 17 15 34 34 H 1.09002 * 113.61550 * 105.46726 * 20 17 15 35 35 H 1.08997 * 113.61282 * 270.88492 * 21 20 17 36 36 H 1.08994 * 113.61608 * 139.98125 * 21 20 17 37 37 H 1.08997 * 113.61328 * 254.52889 * 22 17 15 38 38 H 1.09001 * 113.61804 * 25.35177 * 22 17 15 39 39 H 1.08998 * 109.58707 * 293.81848 * 23 14 13 40 40 H 1.09002 * 109.58628 * 173.39640 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4403 -0.6999 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1293 -0.0098 9 6 3.5115 -1.1940 -0.0051 10 1 3.8756 -0.6768 -0.8928 11 6 4.0218 -0.4789 1.2481 12 6 5.5519 -0.4494 1.2333 13 6 6.0863 -1.8851 1.2444 14 7 5.4861 -2.6218 0.1238 15 6 6.2630 -3.2708 -0.7660 16 8 5.7548 -3.9506 -1.6324 17 6 7.7631 -3.1518 -0.6845 18 6 8.2673 -1.7492 -1.0299 19 9 7.7862 -1.3778 -2.2899 20 6 8.5111 -4.2759 -1.4203 21 6 9.4988 -4.2832 -0.2416 22 6 8.3559 -3.7164 0.6173 23 6 4.0229 -2.6380 -0.0080 24 1 -0.4851 0.8400 0.0040 25 1 3.6391 0.5416 1.2651 26 1 3.6774 -1.0105 2.1351 27 1 5.8972 0.0604 0.3338 28 1 5.9141 0.0809 2.1139 29 1 7.1707 -1.8722 1.1342 30 1 5.8183 -2.3675 2.1843 31 1 7.9115 -1.0407 -0.2818 32 1 9.3572 -1.7478 -1.0423 33 1 7.9346 -5.1965 -1.5126 34 1 8.9581 -3.9591 -2.3626 35 1 10.3337 -3.5938 -0.3673 36 1 9.8150 -5.2826 0.0570 37 1 8.6776 -2.9477 1.3199 38 1 7.7364 -4.4829 1.0828 39 1 3.5865 -3.1819 0.8298 40 1 3.7457 -3.1219 -0.9446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334472246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:54 Heat of formation + Delta-G solvation = -89.074560 kcal Electronic energy + Delta-G solvation = -22162.227063 eV Core-core repulsion = 18890.889037 eV Total energy + Delta-G solvation = -3271.338026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.68757 -41.81430 -39.39434 -38.21928 -35.38267 -33.54723 -32.35255 -29.92586 -27.39040 -26.94690 -26.42117 -24.98958 -23.22847 -22.07073 -20.43071 -19.63306 -18.89145 -18.26095 -17.52111 -17.00240 -16.86437 -16.49575 -16.30246 -15.60772 -15.42390 -15.32705 -14.98441 -14.88159 -14.34241 -14.08892 -13.89155 -13.42574 -13.22309 -13.03805 -12.93690 -12.84130 -12.41853 -12.27563 -12.12463 -11.96687 -11.90078 -11.53045 -11.38360 -11.35340 -11.19076 -11.06178 -10.71816 -10.49837 -9.58321 -8.34633 -6.40129 1.24627 1.33934 1.43770 1.54688 2.03417 2.28624 3.00194 3.20454 3.23045 3.58647 3.64163 3.84040 3.88578 4.01477 4.10907 4.17450 4.25634 4.27737 4.41488 4.49632 4.58561 4.64738 4.72484 4.79805 4.81282 4.85882 4.94228 5.01066 5.09478 5.11212 5.14377 5.15268 5.34828 5.39501 5.46289 5.61941 5.71963 6.22225 6.49203 6.65832 7.15306 7.25711 8.82253 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030023 B = 0.005870 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.398408 B = 4768.972747 C = 4914.651027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.252 1.252 5 H -0.255 1.255 6 H -0.301 1.301 7 C -0.524 4.524 8 H 0.031 0.969 9 C 0.009 3.991 10 H 0.008 0.992 11 C -0.121 4.121 12 C -0.137 4.137 13 C 0.099 3.901 14 N -0.606 5.606 15 C 0.516 3.484 16 O -0.595 6.595 17 C -0.151 4.151 18 C 0.078 3.922 19 F -0.237 7.237 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.110 4.110 23 C 0.139 3.861 24 H 0.267 0.733 25 H 0.038 0.962 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.527 -2.457 6.570 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.177 1.177 5 H -0.180 1.180 6 H -0.229 1.229 7 C -0.563 4.563 8 H 0.050 0.950 9 C -0.011 4.011 10 H 0.027 0.973 11 C -0.158 4.158 12 C -0.174 4.174 13 C -0.021 4.021 14 N -0.337 5.337 15 C 0.306 3.694 16 O -0.476 6.476 17 C -0.155 4.155 18 C 0.024 3.976 19 F -0.218 7.218 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.148 4.148 23 C 0.016 3.984 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.129 0.871 29 H 0.139 0.861 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.149 0.851 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 25.094 -2.711 6.110 25.969 hybrid contribution -1.359 0.565 -0.719 1.638 sum 23.735 -2.147 5.392 24.434 Atomic orbital electron populations 1.70043 1.08258 1.28199 1.52295 1.25870 0.95449 1.03092 0.93882 0.85758 0.78690 0.78275 0.79171 1.17728 1.17973 1.22883 1.21214 0.91072 0.93196 1.50802 0.95028 1.19334 0.93758 0.93170 0.94800 0.97350 1.21848 0.95900 0.99186 0.98912 1.22053 0.94766 0.97149 1.03476 1.22288 0.99652 0.91277 0.88928 1.48347 1.06434 1.50753 1.28189 1.21131 0.90233 0.78180 0.79882 1.90634 1.76534 1.42630 1.37786 1.23012 0.89236 0.98884 1.04339 1.22266 1.01928 0.92465 0.80986 1.92767 1.90897 1.92699 1.45442 1.22841 0.97372 0.96430 0.99195 1.22884 0.96187 1.03373 0.93290 1.23049 0.97114 1.01237 0.93362 1.21289 0.78970 0.97611 1.00541 0.92391 0.94385 0.91487 0.92630 0.87083 0.86074 0.89182 0.88308 0.85124 0.91352 0.90988 0.86859 0.89484 0.86439 0.89733 0.91898 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.35 13.96 21.44 0.30 -60.05 16 2 C 0.01 0.85 5.45 84.65 0.46 1.31 16 3 Si 0.95 45.50 24.39 68.60 1.67 47.17 16 4 H -0.25 -10.88 6.86 99.48 0.68 -10.20 16 5 H -0.26 -11.63 6.52 99.48 0.65 -10.98 16 6 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 7 C -0.52 -30.86 9.14 25.60 0.23 -30.63 16 8 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 9 C 0.01 0.43 1.84 -11.46 -0.02 0.41 16 10 H 0.01 0.44 7.19 -2.39 -0.02 0.42 16 11 C -0.12 -4.66 4.66 30.62 0.14 -4.52 16 12 C -0.14 -3.61 6.03 30.67 0.18 -3.43 16 13 C 0.10 2.27 5.27 86.36 0.46 2.72 16 14 N -0.61 -20.62 2.97 -818.91 -2.43 -23.05 16 15 C 0.52 18.04 6.41 87.66 0.56 18.60 16 16 O -0.60 -27.16 15.65 -3.05 -0.05 -27.21 16 17 C -0.15 -3.33 0.51 -52.40 -0.03 -3.36 16 18 C 0.08 1.45 6.49 71.98 0.47 1.92 16 19 F -0.24 -7.14 17.07 44.97 0.77 -6.38 16 20 C -0.12 -2.49 6.89 31.12 0.21 -2.27 16 21 C -0.12 -1.26 7.73 31.12 0.24 -1.02 16 22 C -0.11 -1.39 5.68 31.12 0.18 -1.22 16 23 C 0.14 6.08 5.64 86.36 0.49 6.57 16 24 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 25 H 0.04 1.56 3.28 -2.38 -0.01 1.55 16 26 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.05 1.56 8.05 -2.39 -0.02 1.54 16 28 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 29 H 0.12 1.75 3.05 -2.39 -0.01 1.74 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.10 1.52 6.02 -2.39 -0.01 1.50 16 32 H 0.13 1.26 7.32 -2.39 -0.02 1.24 16 33 H 0.07 1.76 7.77 -2.38 -0.02 1.74 16 34 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 35 H 0.11 0.60 7.61 -2.39 -0.02 0.58 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.12 0.66 7.09 -2.39 -0.02 0.64 16 38 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 39 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.05 2.38 7.04 -2.39 -0.02 2.37 16 Total: -1.00 -81.30 303.89 4.79 -76.51 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.96 Total: 7.93 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 3.58 Total: -14.91 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -2.13 Total: -83.11 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.05 Total: -27.21 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.77 Total: -6.38 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.67 Total: 47.17 kcal Total: -81.30 4.79 -76.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334472246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.568 kcal (2) G-P(sol) polarization free energy of solvation -81.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds