Wall clock time and date at job start Mon Mar 30 2020 00:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99881 * 2 1 4 4 H 1.48500 * 109.47333 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47499 * 300.00244 * 3 2 1 6 6 H 1.48508 * 109.46929 * 60.00296 * 3 2 1 7 7 C 1.37880 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00008 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00003 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.51847 * 60.08342 * 9 7 2 11 11 C 1.53040 * 109.49700 * 300.00666 * 9 7 2 12 12 C 1.53041 * 109.54015 * 178.68442 * 11 9 7 13 13 C 1.53194 * 109.31066 * 61.35726 * 12 11 9 14 14 N 1.46924 * 108.77917 * 305.36892 * 13 12 11 15 15 C 1.34778 * 120.63070 * 233.58393 * 14 13 12 16 16 O 1.21276 * 119.99833 * 184.26937 * 15 14 13 17 17 C 1.50696 * 119.99811 * 4.55020 * 15 14 13 18 18 C 1.53000 * 112.84998 * 291.88085 * 17 15 14 19 19 F 1.39904 * 109.47082 * 303.44901 * 18 17 15 20 20 C 1.53787 * 113.61449 * 160.68740 * 17 15 14 21 21 C 1.53946 * 87.01797 * 220.04488 * 20 17 15 22 22 C 1.53780 * 113.61745 * 63.07812 * 17 15 14 23 23 C 1.46929 * 118.73596 * 53.85984 * 14 13 12 24 24 H 0.97003 * 120.00279 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46243 * 58.65680 * 11 9 7 26 26 H 1.09002 * 109.44605 * 298.69505 * 11 9 7 27 27 H 1.09000 * 109.49366 * 301.41248 * 12 11 9 28 28 H 1.08989 * 109.49822 * 181.31407 * 12 11 9 29 29 H 1.09000 * 109.58244 * 185.57914 * 13 12 11 30 30 H 1.09009 * 109.58368 * 65.15771 * 13 12 11 31 31 H 1.08997 * 109.47143 * 63.44780 * 18 17 15 32 32 H 1.09001 * 109.47269 * 183.44932 * 18 17 15 33 33 H 1.09001 * 113.61082 * 334.56638 * 20 17 15 34 34 H 1.08997 * 113.61067 * 105.46577 * 20 17 15 35 35 H 1.09002 * 113.53925 * 270.80674 * 21 20 17 36 36 H 1.09004 * 113.74377 * 139.94132 * 21 20 17 37 37 H 1.08998 * 113.61521 * 254.53061 * 22 17 15 38 38 H 1.08999 * 113.61289 * 25.43318 * 22 17 15 39 39 H 1.09000 * 109.58344 * 65.92822 * 23 14 13 40 40 H 1.09003 * 109.58226 * 186.34996 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6249 -2.5582 -0.8908 11 6 0.3713 -2.5811 1.2491 12 6 -0.4190 -3.8915 1.2336 13 6 0.5571 -5.0721 1.2511 14 7 1.4999 -4.9228 0.1341 15 6 1.6773 -5.9219 -0.7529 16 8 2.5138 -5.8173 -1.6247 17 6 0.8318 -7.1663 -0.6653 18 6 1.1346 -8.0039 0.5787 19 9 2.4940 -8.3340 0.5991 20 6 0.8034 -7.9846 -1.9670 21 6 -0.6942 -8.2150 -1.6949 22 6 -0.6683 -6.9085 -0.8842 23 6 2.2501 -3.6660 0.0062 24 1 -0.4851 0.8400 -0.0004 25 1 -0.3211 -1.7394 1.2615 26 1 1.0004 -2.5469 2.1386 27 1 -1.0295 -3.9375 0.3318 28 1 -1.0626 -3.9385 2.1119 29 1 0.0042 -6.0049 1.1404 30 1 1.1050 -5.0793 2.1934 31 1 0.8865 -7.4306 1.4719 32 1 0.5393 -8.9167 0.5558 33 1 0.9986 -7.3911 -2.8602 34 1 1.4012 -8.8950 -1.9235 35 1 -0.8958 -9.0997 -1.0909 36 1 -1.3160 -8.1620 -2.5886 37 1 -1.2570 -6.9514 0.0321 38 1 -0.8762 -6.0203 -1.4808 39 1 2.9333 -3.5610 0.8490 40 1 2.8148 -3.6709 -0.9262 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334472265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:56 Heat of formation + Delta-G solvation = -74.583836 kcal Electronic energy + Delta-G solvation = -21984.272153 eV Core-core repulsion = 18713.562492 eV Total energy + Delta-G solvation = -3270.709661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.66740 -40.50515 -37.96349 -36.56611 -33.51293 -31.36461 -30.46303 -28.75241 -25.86796 -25.51889 -25.01668 -23.61423 -21.73080 -20.48689 -19.14195 -18.21047 -17.13013 -16.32031 -16.19536 -15.91952 -15.37604 -15.17131 -14.65256 -14.29793 -14.15072 -13.57917 -13.41208 -12.80130 -12.76159 -12.52756 -12.28985 -12.06963 -12.01727 -11.80332 -11.37305 -11.09929 -11.01015 -10.82729 -10.70659 -10.49448 -10.44993 -10.25575 -9.95888 -9.80360 -9.47564 -9.15530 -8.82159 -8.40684 -7.89707 -6.03957 -4.10759 2.99786 3.27747 3.35929 3.39909 3.49678 4.15482 4.23373 4.41394 4.51304 4.61175 4.77707 4.82579 4.99926 5.20068 5.26010 5.34002 5.47478 5.59357 5.63140 5.69654 5.76105 5.78277 5.91109 6.02267 6.08748 6.26264 6.30896 6.38867 6.45645 6.65135 6.78501 6.95768 7.14776 7.31169 7.67360 7.89436 8.00913 8.05412 8.35974 8.64832 8.93141 9.54335 11.01581 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031330 B = 0.005124 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.492946 B = 5463.051426 C = 5600.941409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.102 3.898 14 N -0.599 5.599 15 C 0.527 3.473 16 O -0.544 6.544 17 C -0.146 4.146 18 C 0.086 3.914 19 F -0.209 7.209 20 C -0.106 4.106 21 C -0.144 4.144 22 C -0.116 4.116 23 C 0.117 3.883 24 H 0.260 0.740 25 H 0.096 0.904 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 -15.473 2.544 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.172 4.172 13 C -0.021 4.021 14 N -0.331 5.331 15 C 0.314 3.686 16 O -0.421 6.421 17 C -0.150 4.150 18 C 0.031 3.969 19 F -0.190 7.190 20 C -0.144 4.144 21 C -0.181 4.181 22 C -0.154 4.154 23 C -0.004 4.004 24 H 0.070 0.930 25 H 0.114 0.886 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.201 -15.281 2.090 15.985 hybrid contribution 0.444 1.027 0.171 1.132 sum -3.757 -14.253 2.261 14.912 Atomic orbital electron populations 1.69876 1.05900 1.26372 1.50714 1.24933 0.94854 0.99090 0.94928 0.86526 0.80232 0.83647 0.77551 1.19711 1.21016 1.21035 1.21127 0.93069 0.90276 1.50691 0.92424 1.19050 0.92860 0.91136 0.94760 0.95276 1.21634 0.99470 0.95369 0.98602 1.22002 0.97592 0.96654 1.00957 1.21963 0.91568 0.99293 0.89294 1.48240 1.41887 1.16072 1.26865 1.19971 0.83220 0.83835 0.81614 1.90647 1.35162 1.80472 1.35868 1.22770 0.97936 0.95892 0.98369 1.21904 0.78307 0.99466 0.97226 1.92802 1.34543 1.94003 1.97625 1.22794 0.95961 0.99505 0.96156 1.22940 0.97028 0.97460 1.00687 1.22939 0.92005 0.99286 1.01168 1.22103 0.95019 0.81807 1.01487 0.93037 0.88581 0.94591 0.92293 0.92490 0.90789 0.92016 0.89717 0.89820 0.88670 0.90817 0.89970 0.90675 0.90272 0.88683 0.92704 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.78 11.31 55.43 0.63 -24.15 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -13.89 8.56 -34.44 -0.29 -14.18 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.04 1.00 2.27 -91.43 -0.21 0.80 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 12 C -0.13 -2.28 6.08 -26.61 -0.16 -2.45 16 13 C 0.10 1.54 5.12 -3.71 -0.02 1.52 16 14 N -0.60 -11.21 2.97 -172.50 -0.51 -11.72 16 15 C 0.53 9.82 6.44 -10.99 -0.07 9.75 16 16 O -0.54 -12.26 15.63 5.56 0.09 -12.18 16 17 C -0.15 -1.96 0.50 -154.85 -0.08 -2.04 16 18 C 0.09 0.97 6.41 37.16 0.24 1.21 16 19 F -0.21 -3.11 17.11 2.25 0.04 -3.07 16 20 C -0.11 -1.31 6.90 -25.83 -0.18 -1.49 16 21 C -0.14 -1.32 7.74 -25.83 -0.20 -1.52 16 22 C -0.12 -1.28 5.96 -25.92 -0.15 -1.43 16 23 C 0.12 2.57 5.67 -3.49 -0.02 2.55 16 24 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.10 2.40 6.04 -51.93 -0.31 2.09 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.84 8.14 -51.94 -0.42 0.41 16 29 H 0.07 0.88 3.13 -51.93 -0.16 0.72 16 30 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.08 0.85 5.70 -51.93 -0.30 0.56 16 32 H 0.08 0.68 7.31 -51.93 -0.38 0.30 16 33 H 0.09 1.34 7.76 -51.93 -0.40 0.94 16 34 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.08 0.59 7.60 -51.93 -0.39 0.20 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.70 7.20 -51.93 -0.37 0.33 16 38 H 0.09 1.22 8.09 -51.93 -0.42 0.80 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.86 7.03 -51.93 -0.36 1.50 16 LS Contribution 310.81 15.07 4.68 4.68 Total: -1.00 -30.91 310.81 -7.50 -38.41 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.03 Total: 0.23 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -1.37 Total: -8.27 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.12 Total: -35.88 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.91 -7.50 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334472265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.173 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds