Wall clock time and date at job start Mon Mar 30 2020 00:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 114.00000 * 2 1 4 4 C 1.53007 * 109.47352 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46883 * 64.99824 * 4 3 2 6 6 C 1.36928 * 120.00242 * 94.78583 * 5 4 3 7 7 H 1.07998 * 119.99956 * 228.92376 * 6 5 4 8 8 C 1.38800 * 119.99791 * 48.64516 * 6 5 4 9 9 N 1.31562 * 120.00188 * 197.66839 * 8 6 5 10 10 Si 1.86803 * 120.00108 * 17.67064 * 8 6 5 11 11 H 1.48506 * 109.46977 * 92.14099 * 10 8 6 12 12 H 1.48493 * 109.47385 * 212.14369 * 10 8 6 13 13 H 1.48502 * 109.47109 * 332.14596 * 10 8 6 14 14 C 1.38226 * 120.00072 * 274.78676 * 5 4 3 15 15 N 1.31567 * 126.45875 * 81.98758 * 14 5 4 16 16 N 1.28414 * 110.49868 * 179.86030 * 15 14 5 17 17 N 1.28904 * 110.35513 * 0.41893 * 16 15 14 18 18 N 1.35434 * 126.45669 * 262.30470 * 14 5 4 19 19 C 1.46500 * 127.39005 * 359.94432 * 18 14 5 20 20 C 1.52994 * 109.47329 * 67.60313 * 19 18 14 21 21 C 1.53003 * 109.47051 * 187.60504 * 19 18 14 22 22 C 1.52999 * 109.46447 * 307.60273 * 19 18 14 23 23 H 1.08999 * 109.47062 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47911 * 300.00521 * 1 2 3 25 25 H 1.09000 * 109.46793 * 60.01010 * 1 2 3 26 26 H 1.08999 * 109.47788 * 59.99573 * 3 2 1 27 27 H 1.09006 * 109.47146 * 299.99349 * 3 2 1 28 28 H 1.08999 * 109.46883 * 304.99787 * 4 3 2 29 29 H 1.08999 * 109.47018 * 184.99536 * 4 3 2 30 30 H 0.97006 * 119.99935 * 174.99916 * 9 8 6 31 31 H 1.08997 * 109.47570 * 68.58834 * 20 19 18 32 32 H 1.08999 * 109.47270 * 188.59154 * 20 19 18 33 33 H 1.09005 * 109.46956 * 308.59075 * 20 19 18 34 34 H 1.08998 * 109.47167 * 64.74671 * 21 19 18 35 35 H 1.09003 * 109.46810 * 184.74417 * 21 19 18 36 36 H 1.08995 * 109.47021 * 304.74688 * 21 19 18 37 37 H 1.08997 * 109.47687 * 64.12012 * 22 19 18 38 38 H 1.09004 * 109.46651 * 184.11503 * 22 19 18 39 39 H 1.09000 * 109.47282 * 304.11174 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.3617 1.3479 -2.3055 7 1 3.9636 1.1599 -3.2916 8 6 5.2591 2.3877 -2.1059 9 7 5.3684 3.3437 -3.0031 10 14 6.3118 2.4298 -0.5633 11 1 7.6071 1.7539 -0.8294 12 1 6.5608 3.8406 -0.1723 13 1 5.6045 1.7284 0.5380 14 6 4.0043 -0.8132 -1.3672 15 7 2.9837 -1.5947 -1.6474 16 7 3.3548 -2.8236 -1.6826 17 7 4.6139 -2.9194 -1.4239 18 7 5.0859 -1.6127 -1.2083 19 6 6.4543 -1.2036 -0.8823 20 6 6.4952 -0.6499 0.5433 21 6 7.3865 -2.4124 -0.9869 22 6 6.9103 -0.1215 -1.8631 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.8508 0.5685 0.8427 29 1 3.9784 2.1765 0.0901 30 1 5.9414 4.1073 -2.8309 31 1 6.3191 -1.4586 1.2525 32 1 7.4728 -0.2067 0.7330 33 1 5.7228 0.1104 0.6601 34 1 7.4224 -2.7551 -2.0210 35 1 8.3878 -2.1280 -0.6634 36 1 7.0134 -3.2150 -0.3509 37 1 6.2916 0.7670 -1.7373 38 1 7.9524 0.1307 -1.6670 39 1 6.8118 -0.4914 -2.8837 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335389787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:21 Heat of formation + Delta-G solvation = 130.229405 kcal Electronic energy + Delta-G solvation = -23037.110736 eV Core-core repulsion = 19827.495156 eV Total energy + Delta-G solvation = -3209.615580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.87956 -37.89510 -37.12568 -35.74984 -32.47981 -31.31257 -30.71552 -28.87820 -27.39573 -27.17972 -25.77121 -24.69119 -23.28945 -22.36105 -20.88216 -19.36430 -17.67669 -16.49692 -16.10513 -15.63719 -15.53068 -15.30600 -14.69211 -14.54302 -13.88649 -13.74054 -13.48057 -12.84150 -12.76364 -12.46028 -12.26641 -12.24236 -12.03327 -11.96122 -11.61834 -11.31885 -11.18317 -11.09680 -11.00072 -10.54540 -10.39510 -9.82395 -9.77359 -9.54075 -9.45130 -9.11193 -8.96958 -8.92300 -7.54635 -6.47890 -4.19247 2.03131 2.62468 2.90832 2.99006 3.12983 3.40799 3.94103 4.23123 4.46392 4.71267 4.80016 5.00663 5.17907 5.59407 5.62617 5.64894 5.68091 5.75966 5.82103 5.82897 5.88561 5.96044 6.03466 6.08501 6.09679 6.17242 6.20159 6.23007 6.31037 6.39671 6.52554 6.57202 6.89705 7.06442 7.52470 7.79839 8.15120 8.45317 9.05216 9.41694 9.62910 10.58211 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.014685 B = 0.012561 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.305181 B = 2228.562872 C = 3387.032046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.367 6.367 3 C 0.041 3.959 4 C 0.148 3.852 5 N -0.505 5.505 6 C -0.291 4.291 7 H 0.089 0.911 8 C 0.055 3.945 9 N -0.866 5.866 10 Si 0.856 3.144 11 H -0.262 1.262 12 H -0.296 1.296 13 H -0.243 1.243 14 C 0.509 3.491 15 N -0.327 5.327 16 N -0.064 5.064 17 N -0.126 5.126 18 N -0.386 5.386 19 C 0.182 3.818 20 C -0.179 4.179 21 C -0.143 4.143 22 C -0.191 4.191 23 H 0.077 0.923 24 H 0.026 0.974 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.276 0.724 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.679 -2.468 8.062 8.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.285 6.285 3 C -0.038 4.038 4 C 0.024 3.976 5 N -0.227 5.227 6 C -0.420 4.420 7 H 0.106 0.894 8 C -0.151 4.151 9 N -0.502 5.502 10 Si 0.684 3.316 11 H -0.188 1.188 12 H -0.224 1.224 13 H -0.169 1.169 14 C 0.148 3.852 15 N -0.184 5.184 16 N -0.060 5.060 17 N -0.112 5.112 18 N -0.190 5.190 19 C 0.097 3.903 20 C -0.237 4.237 21 C -0.201 4.201 22 C -0.248 4.248 23 H 0.096 0.904 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.088 0.912 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.324 -3.705 7.706 8.652 hybrid contribution 1.071 1.240 0.780 1.815 sum 2.396 -2.465 8.486 9.156 Atomic orbital electron populations 1.22563 0.82564 1.01836 0.98730 1.88051 1.18279 1.27036 1.95097 1.23173 0.95667 0.85314 0.99628 1.21765 0.91415 0.98093 0.86370 1.40711 1.73144 0.94677 1.14215 1.18738 1.22994 1.10220 0.90024 0.89359 1.25851 0.95740 0.96320 0.97215 1.69703 1.37741 1.08116 1.34627 0.88083 0.82865 0.76851 0.83809 1.18790 1.22379 1.16874 1.22351 0.82618 0.88329 0.91940 1.74976 1.24140 0.96113 1.23167 1.77861 1.04122 1.13000 1.11040 1.82210 1.06690 0.98668 1.23639 1.52975 1.10559 1.05978 1.49524 1.20685 0.77601 0.95991 0.95998 1.22699 1.03963 1.02522 0.94510 1.21968 0.98168 0.96569 1.03410 1.23207 1.02072 1.00880 0.98593 0.90414 0.95534 0.94533 0.94404 0.92118 0.92931 0.89412 0.91368 0.91936 0.90598 0.89760 0.91598 0.91131 0.91345 0.86576 0.91189 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 11.01 101.05 1.11 1.73 16 2 O -0.37 -7.14 8.92 -35.23 -0.31 -7.45 16 3 C 0.04 0.75 6.28 37.16 0.23 0.98 16 4 C 0.15 2.91 3.61 -4.04 -0.01 2.90 16 5 N -0.50 -11.35 1.46 -116.59 -0.17 -11.52 16 6 C -0.29 -7.29 8.38 -15.07 -0.13 -7.41 16 7 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 8 C 0.05 1.34 4.68 -17.46 -0.08 1.25 16 9 N -0.87 -22.82 13.96 55.49 0.77 -22.05 16 10 Si 0.86 17.49 20.53 -169.99 -3.49 13.99 16 11 H -0.26 -5.08 5.17 56.52 0.29 -4.78 16 12 H -0.30 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.24 -4.49 3.25 56.52 0.18 -4.30 16 14 C 0.51 11.73 6.50 -320.35 -2.08 9.65 16 15 N -0.33 -7.89 10.94 30.10 0.33 -7.56 16 16 N -0.06 -1.49 13.38 60.35 0.81 -0.69 16 17 N -0.13 -2.74 13.01 60.35 0.79 -1.96 16 18 N -0.39 -8.18 3.50 -49.12 -0.17 -8.35 16 19 C 0.18 3.27 1.21 -131.82 -0.16 3.11 16 20 C -0.18 -2.90 7.35 37.15 0.27 -2.63 16 21 C -0.14 -2.13 8.13 37.16 0.30 -1.82 16 22 C -0.19 -3.67 6.29 37.16 0.23 -3.44 16 23 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.05 0.99 6.73 -51.93 -0.35 0.64 16 29 H 0.09 1.68 4.72 -51.93 -0.25 1.43 16 30 H 0.28 6.81 8.32 -40.82 -0.34 6.47 16 31 H 0.06 0.93 8.13 -51.93 -0.42 0.50 16 32 H 0.08 1.06 7.96 -51.93 -0.41 0.65 16 33 H 0.08 1.50 2.60 -51.93 -0.13 1.37 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.00 8.01 -51.93 -0.42 0.58 16 37 H 0.12 2.48 0.30 -51.93 -0.02 2.47 16 38 H 0.07 1.19 7.13 -51.93 -0.37 0.82 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 291.75 15.07 4.40 4.40 Total: -1.00 -28.25 291.75 -3.00 -31.25 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.63 Total: 5.62 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.31 Total: 4.31 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 2.35 Total: -52.12 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.31 Total: -7.45 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -3.49 Total: 13.99 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.25 -3.00 -31.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335389787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.480 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds