Wall clock time and date at job start Mon Mar 30 2020 00:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 114.00000 * 2 1 4 4 C 1.53007 * 109.47352 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46883 * 64.99824 * 4 3 2 6 6 C 1.36928 * 120.00242 * 94.78583 * 5 4 3 7 7 H 1.07998 * 119.99956 * 228.92376 * 6 5 4 8 8 C 1.38800 * 119.99791 * 48.64516 * 6 5 4 9 9 N 1.31562 * 120.00188 * 197.66839 * 8 6 5 10 10 Si 1.86803 * 120.00108 * 17.67064 * 8 6 5 11 11 H 1.48506 * 109.46977 * 92.14099 * 10 8 6 12 12 H 1.48493 * 109.47385 * 212.14369 * 10 8 6 13 13 H 1.48502 * 109.47109 * 332.14596 * 10 8 6 14 14 C 1.38226 * 120.00072 * 274.78676 * 5 4 3 15 15 N 1.31567 * 126.45875 * 81.98758 * 14 5 4 16 16 N 1.28414 * 110.49868 * 179.86030 * 15 14 5 17 17 N 1.28904 * 110.35513 * 0.41893 * 16 15 14 18 18 N 1.35434 * 126.45669 * 262.30470 * 14 5 4 19 19 C 1.46500 * 127.39005 * 359.94432 * 18 14 5 20 20 C 1.52994 * 109.47329 * 67.60313 * 19 18 14 21 21 C 1.53003 * 109.47051 * 187.60504 * 19 18 14 22 22 C 1.52999 * 109.46447 * 307.60273 * 19 18 14 23 23 H 1.08999 * 109.47062 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47911 * 300.00521 * 1 2 3 25 25 H 1.09000 * 109.46793 * 60.01010 * 1 2 3 26 26 H 1.08999 * 109.47788 * 59.99573 * 3 2 1 27 27 H 1.09006 * 109.47146 * 299.99349 * 3 2 1 28 28 H 1.08999 * 109.46883 * 304.99787 * 4 3 2 29 29 H 1.08999 * 109.47018 * 184.99536 * 4 3 2 30 30 H 0.97006 * 119.99935 * 174.99916 * 9 8 6 31 31 H 1.08997 * 109.47570 * 68.58834 * 20 19 18 32 32 H 1.08999 * 109.47270 * 188.59154 * 20 19 18 33 33 H 1.09005 * 109.46956 * 308.59075 * 20 19 18 34 34 H 1.08998 * 109.47167 * 64.74671 * 21 19 18 35 35 H 1.09003 * 109.46810 * 184.74417 * 21 19 18 36 36 H 1.08995 * 109.47021 * 304.74688 * 21 19 18 37 37 H 1.08997 * 109.47687 * 64.12012 * 22 19 18 38 38 H 1.09004 * 109.46651 * 184.11503 * 22 19 18 39 39 H 1.09000 * 109.47282 * 304.11174 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.3617 1.3479 -2.3055 7 1 3.9636 1.1599 -3.2916 8 6 5.2591 2.3877 -2.1059 9 7 5.3684 3.3437 -3.0031 10 14 6.3118 2.4298 -0.5633 11 1 7.6071 1.7539 -0.8294 12 1 6.5608 3.8406 -0.1723 13 1 5.6045 1.7284 0.5380 14 6 4.0043 -0.8132 -1.3672 15 7 2.9837 -1.5947 -1.6474 16 7 3.3548 -2.8236 -1.6826 17 7 4.6139 -2.9194 -1.4239 18 7 5.0859 -1.6127 -1.2083 19 6 6.4543 -1.2036 -0.8823 20 6 6.4952 -0.6499 0.5433 21 6 7.3865 -2.4124 -0.9869 22 6 6.9103 -0.1215 -1.8631 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.8508 0.5685 0.8427 29 1 3.9784 2.1765 0.0901 30 1 5.9414 4.1073 -2.8309 31 1 6.3191 -1.4586 1.2525 32 1 7.4728 -0.2067 0.7330 33 1 5.7228 0.1104 0.6601 34 1 7.4224 -2.7551 -2.0210 35 1 8.3878 -2.1280 -0.6634 36 1 7.0134 -3.2150 -0.3509 37 1 6.2916 0.7670 -1.7373 38 1 7.9524 0.1307 -1.6670 39 1 6.8118 -0.4914 -2.8837 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335389787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:20 Heat of formation + Delta-G solvation = 111.014235 kcal Electronic energy + Delta-G solvation = -23037.943969 eV Core-core repulsion = 19827.495156 eV Total energy + Delta-G solvation = -3210.448812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.159 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.62115 -39.46809 -38.55255 -37.32907 -34.34913 -32.95673 -32.39876 -30.52050 -28.62154 -28.56633 -27.09007 -26.51810 -24.94498 -23.91885 -22.55696 -20.98153 -19.46418 -18.10287 -17.74859 -17.18662 -17.02944 -16.93172 -16.15262 -16.00667 -15.27718 -15.24179 -15.10970 -14.53046 -14.31606 -14.01254 -13.75539 -13.55207 -13.46576 -13.28132 -13.05292 -12.81485 -12.71040 -12.49231 -12.43921 -12.18992 -11.95596 -11.56060 -11.34917 -11.08334 -11.03485 -10.80771 -10.70101 -10.37849 -9.33278 -8.36758 -6.14342 0.29330 1.01847 1.32040 1.35666 1.51316 1.61329 2.23201 2.56654 2.88868 3.09130 3.39637 3.68994 3.83717 4.10437 4.18800 4.32437 4.36177 4.44930 4.53082 4.54087 4.58793 4.63277 4.64117 4.66482 4.71425 4.72585 4.77331 4.82266 4.91957 4.97586 5.05290 5.21499 5.38022 5.49395 5.68061 6.11529 6.45368 6.64928 7.17832 7.55810 7.84345 8.72772 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.014685 B = 0.012561 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.305181 B = 2228.562872 C = 3387.032046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.395 6.395 3 C 0.044 3.956 4 C 0.141 3.859 5 N -0.504 5.504 6 C -0.294 4.294 7 H 0.028 0.972 8 C 0.020 3.980 9 N -0.915 5.915 10 Si 0.914 3.086 11 H -0.238 1.238 12 H -0.304 1.304 13 H -0.210 1.210 14 C 0.498 3.502 15 N -0.350 5.350 16 N -0.080 5.080 17 N -0.117 5.117 18 N -0.378 5.378 19 C 0.168 3.832 20 C -0.179 4.179 21 C -0.138 4.138 22 C -0.192 4.192 23 H 0.082 0.918 24 H 0.055 0.945 25 H 0.032 0.968 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.279 0.721 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.403 -2.884 11.055 11.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.314 6.314 3 C -0.035 4.035 4 C 0.018 3.982 5 N -0.227 5.227 6 C -0.423 4.423 7 H 0.046 0.954 8 C -0.182 4.182 9 N -0.552 5.552 10 Si 0.737 3.263 11 H -0.163 1.163 12 H -0.232 1.232 13 H -0.134 1.134 14 C 0.136 3.864 15 N -0.208 5.208 16 N -0.075 5.075 17 N -0.104 5.104 18 N -0.183 5.183 19 C 0.085 3.915 20 C -0.236 4.236 21 C -0.196 4.196 22 C -0.250 4.250 23 H 0.101 0.899 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.038 -4.149 10.708 11.878 hybrid contribution 0.482 1.335 -0.254 1.441 sum 3.519 -2.814 10.454 11.384 Atomic orbital electron populations 1.22711 0.80726 1.02609 0.99914 1.88003 1.20420 1.27632 1.95323 1.23111 0.94822 0.85222 1.00328 1.21957 0.92567 0.98351 0.85362 1.40618 1.73538 0.94211 1.14322 1.18161 1.23885 1.11395 0.88822 0.95421 1.26442 0.95951 0.94850 1.00976 1.69844 1.38790 1.09052 1.37474 0.87169 0.81891 0.76845 0.80385 1.16302 1.23248 1.13423 1.22297 0.83085 0.88644 0.92371 1.74897 1.25548 0.96584 1.23740 1.77830 1.04757 1.12910 1.12052 1.82112 1.06230 0.99256 1.22797 1.53181 1.11501 1.05239 1.48366 1.21179 0.76284 0.97076 0.96922 1.22738 1.05153 1.02705 0.93026 1.21989 0.99258 0.95193 1.03124 1.23207 1.03381 1.00393 0.97974 0.89931 0.92659 0.94933 0.90607 0.94384 0.91322 0.88873 0.91150 0.90332 0.87452 0.91436 0.92572 0.87416 0.91015 0.88608 0.88275 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.09 11.01 113.37 1.25 2.34 16 2 O -0.39 -15.04 8.92 -148.98 -1.33 -16.37 16 3 C 0.04 1.54 6.28 71.98 0.45 1.99 16 4 C 0.14 5.32 3.61 86.38 0.31 5.63 16 5 N -0.50 -22.65 1.46 -522.77 -0.77 -23.42 16 6 C -0.29 -15.23 8.38 84.03 0.70 -14.53 16 7 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 8 C 0.02 1.00 4.68 84.87 0.40 1.40 16 9 N -0.91 -49.60 13.96 21.65 0.30 -49.30 16 10 Si 0.91 34.47 20.53 68.60 1.41 35.88 16 11 H -0.24 -8.04 5.17 99.48 0.51 -7.53 16 12 H -0.30 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.21 -6.82 3.25 99.48 0.32 -6.50 16 14 C 0.50 22.91 6.50 260.63 1.69 24.60 16 15 N -0.35 -17.10 10.94 -58.67 -0.64 -17.74 16 16 N -0.08 -3.71 13.38 37.02 0.50 -3.21 16 17 N -0.12 -5.01 13.01 37.02 0.48 -4.53 16 18 N -0.38 -15.54 3.50 -309.33 -1.08 -16.62 16 19 C 0.17 5.53 1.21 3.60 0.00 5.54 16 20 C -0.18 -4.92 7.35 71.98 0.53 -4.39 16 21 C -0.14 -3.58 8.13 71.98 0.59 -2.99 16 22 C -0.19 -6.99 6.29 71.98 0.45 -6.53 16 23 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.07 2.38 6.73 -2.39 -0.02 2.36 16 29 H 0.09 3.36 4.72 -2.39 -0.01 3.35 16 30 H 0.28 14.04 8.32 -92.70 -0.77 13.27 16 31 H 0.08 1.93 8.13 -2.39 -0.02 1.91 16 32 H 0.11 2.31 7.96 -2.39 -0.02 2.29 16 33 H 0.07 2.10 2.60 -2.38 -0.01 2.09 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 1.83 8.01 -2.39 -0.02 1.81 16 37 H 0.10 3.94 0.30 -2.39 0.00 3.94 16 38 H 0.10 2.97 7.13 -2.38 -0.02 2.95 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -64.24 291.75 5.73 -58.51 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.48 Total: 23.75 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.38 Total: 13.06 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -1.21 Total: -114.82 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -1.33 Total: -16.37 kcal Atomic # 14 Polarization: 34.47 SS G_CDS: 1.41 Total: 35.88 kcal Total: -64.24 5.73 -58.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335389787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.523 kcal (2) G-P(sol) polarization free energy of solvation -64.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds