Wall clock time and date at job start Mon Mar 30 2020 01:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00149 * 2 1 4 4 H 1.48497 * 109.47477 * 240.00076 * 3 2 1 5 5 H 1.48502 * 109.46799 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47031 * 120.00049 * 3 2 1 7 7 C 1.37882 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99484 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46993 * 299.99563 * 9 7 2 11 11 O 1.42894 * 109.47580 * 60.00087 * 9 7 2 12 12 C 1.53004 * 109.46832 * 180.02562 * 9 7 2 13 13 N 1.46899 * 109.47098 * 178.37815 * 12 9 7 14 14 C 1.46844 * 111.00089 * 164.05892 * 13 12 9 15 15 C 1.53036 * 109.51819 * 185.82999 * 14 13 12 16 16 C 1.53119 * 109.27750 * 300.82771 * 15 14 13 17 17 C 1.53120 * 109.16257 * 57.65191 * 16 15 14 18 18 H 1.09002 * 109.50111 * 62.28316 * 17 16 15 19 19 O 1.42898 * 109.50288 * 182.36418 * 17 16 15 20 20 C 1.42899 * 114.00180 * 269.99457 * 19 17 16 21 21 C 1.52999 * 109.47564 * 179.97438 * 20 19 17 22 22 C 1.52993 * 117.50260 * 243.75354 * 21 20 19 23 23 C 1.52995 * 117.50427 * 175.09039 * 21 20 19 24 24 C 1.46827 * 110.98131 * 288.26878 * 13 12 9 25 25 H 0.97001 * 120.00024 * 359.97438 * 1 2 3 26 26 H 0.96694 * 113.99964 * 59.99393 * 11 9 7 27 27 H 1.08993 * 109.47328 * 58.37628 * 12 9 7 28 28 H 1.09001 * 109.46940 * 298.37424 * 12 9 7 29 29 H 1.09000 * 109.46362 * 65.81820 * 14 13 12 30 30 H 1.09003 * 109.46596 * 305.84272 * 14 13 12 31 31 H 1.09006 * 109.49851 * 60.76423 * 15 14 13 32 32 H 1.09001 * 109.50810 * 180.88578 * 15 14 13 33 33 H 1.09003 * 109.52025 * 177.55318 * 16 15 14 34 34 H 1.08995 * 109.52341 * 297.74397 * 16 15 14 35 35 H 1.09004 * 109.47262 * 300.00713 * 20 19 17 36 36 H 1.09001 * 109.46909 * 60.00302 * 20 19 17 37 37 H 1.09003 * 115.54585 * 29.42067 * 21 20 19 38 38 H 1.09005 * 117.50001 * 359.97438 * 22 21 20 39 39 H 1.08998 * 117.50256 * 145.01607 * 22 21 20 40 40 H 1.08994 * 117.50072 * 214.98312 * 23 21 20 41 41 H 1.09007 * 117.49672 * 359.97438 * 23 21 20 42 42 H 1.09001 * 109.46337 * 54.14886 * 24 13 12 43 43 H 1.09001 * 109.46025 * 294.16445 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 1 0.6240 -2.5574 0.8880 11 8 0.4299 -2.5741 -1.1688 12 6 2.2452 -3.6621 -0.0015 13 7 1.5111 -4.9339 0.0366 14 6 2.3818 -6.0555 -0.3380 15 6 1.5524 -7.3385 -0.4285 16 6 0.8923 -7.6104 0.9261 17 6 0.0296 -6.4068 1.3154 18 1 -0.7640 -6.2748 0.5800 19 8 -0.5463 -6.6295 2.6041 20 6 -1.8172 -7.2817 2.5679 21 6 -2.3358 -7.4681 3.9952 22 6 -2.5158 -8.9011 4.5000 23 6 -3.7415 -8.0473 4.1662 24 6 0.9033 -5.1508 1.3554 25 1 -0.4850 0.8401 0.0004 26 1 0.9223 -2.5282 -1.9997 27 1 2.8902 -3.5885 0.8741 28 1 2.8532 -3.6205 -0.9052 29 1 3.1599 -6.1785 0.4153 30 1 2.8415 -5.8513 -1.3050 31 1 0.7827 -7.2211 -1.1914 32 1 2.2016 -8.1738 -0.6912 33 1 0.2658 -8.4995 0.8540 34 1 1.6622 -7.7664 1.6816 35 1 -2.5220 -6.6730 2.0014 36 1 -1.7123 -8.2557 2.0898 37 1 -2.0094 -6.7180 4.7156 38 1 -2.2652 -9.7113 3.8151 39 1 -2.3082 -9.0938 5.5525 40 1 -4.3398 -7.6785 4.9993 41 1 -4.2972 -8.2951 3.2618 42 1 0.2891 -4.2895 1.6184 43 1 1.6884 -5.2782 2.1007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335832980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:11 Heat of formation + Delta-G solvation = -76.736458 kcal Electronic energy + Delta-G solvation = -21193.940832 eV Core-core repulsion = 18046.598132 eV Total energy + Delta-G solvation = -3147.342701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.29502 -37.89043 -36.42741 -35.24591 -32.48320 -32.01370 -29.98026 -28.14761 -26.80789 -25.13596 -23.04394 -22.59480 -22.26379 -20.82503 -20.22425 -19.49376 -17.13273 -16.73758 -15.88583 -15.27558 -14.97231 -14.83488 -14.61980 -14.35696 -14.23773 -13.92211 -13.31312 -13.02972 -12.89030 -12.81452 -12.57622 -12.09349 -11.75016 -11.36690 -11.15970 -11.08407 -10.88895 -10.87514 -10.84106 -10.67089 -10.57110 -10.51768 -10.22759 -10.16128 -9.97081 -9.27275 -8.94453 -8.52580 -8.08972 -7.60098 -5.96528 -4.15104 3.31083 3.36360 3.37623 3.40801 3.74287 4.36939 4.53802 4.69853 4.73238 4.92826 4.95627 5.02564 5.15960 5.22187 5.30934 5.34948 5.43423 5.51794 5.57807 5.61178 5.69038 5.71942 5.86490 5.90639 5.90884 5.96041 6.06061 6.07899 6.16456 6.19879 6.27934 6.43821 6.49118 6.63308 6.84308 7.33863 7.60271 7.63883 7.81747 7.93728 8.24324 8.88806 9.50409 9.66951 11.07540 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020134 B = 0.004184 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.320967 B = 6690.071967 C = 7687.678226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.576 4.576 8 H 0.054 0.946 9 C 0.238 3.762 10 H 0.054 0.946 11 O -0.554 6.554 12 C 0.033 3.967 13 N -0.524 5.524 14 C 0.051 3.949 15 C -0.113 4.113 16 C -0.139 4.139 17 C 0.096 3.904 18 H 0.070 0.930 19 O -0.381 6.381 20 C 0.095 3.905 21 C -0.150 4.150 22 C -0.180 4.180 23 C -0.175 4.175 24 C 0.063 3.937 25 H 0.261 0.739 26 H 0.341 0.659 27 H 0.028 0.972 28 H 0.064 0.936 29 H 0.025 0.975 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.888 -17.198 3.853 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.614 4.614 8 H 0.072 0.928 9 C 0.180 3.820 10 H 0.072 0.928 11 O -0.355 6.355 12 C -0.094 4.094 13 N -0.250 5.250 14 C -0.077 4.077 15 C -0.150 4.150 16 C -0.177 4.177 17 C 0.038 3.962 18 H 0.088 0.912 19 O -0.299 6.299 20 C 0.018 3.982 21 C -0.168 4.168 22 C -0.217 4.217 23 C -0.212 4.212 24 C -0.065 4.065 25 H 0.070 0.930 26 H 0.184 0.816 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.834 -17.057 4.154 17.783 hybrid contribution 1.584 0.844 0.078 1.797 sum -1.250 -16.213 4.232 16.803 Atomic orbital electron populations 1.70072 1.05904 1.26468 1.46915 1.25015 0.94669 0.99016 0.93866 0.86747 0.79726 0.83286 0.78643 1.20164 1.21193 1.20223 1.21629 0.93095 0.91687 1.55018 0.92818 1.19299 0.87827 0.88384 0.86468 0.92803 1.86564 1.37739 1.96299 1.14935 1.23091 0.97108 0.89514 0.99716 1.61838 1.33756 1.02209 1.27159 1.22128 0.94054 0.91304 1.00215 1.21526 0.99640 0.96829 0.97053 1.22067 0.99711 0.98113 0.97769 1.22063 0.95456 0.94324 0.84382 0.91178 1.87850 1.33792 1.79354 1.28938 1.21994 0.85356 0.96197 0.94681 1.22163 0.99282 0.97425 0.97940 1.23064 1.02459 0.94070 1.02061 1.22973 0.90661 1.04113 1.03474 1.21965 0.97422 0.97122 0.89991 0.92959 0.81585 0.95325 0.91751 0.95652 0.90929 0.91011 0.91734 0.92283 0.91687 0.92693 0.93561 0.86785 0.88836 0.88762 0.88456 0.88685 0.89318 0.94968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.64 12.84 55.43 0.71 -24.93 16 2 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.58 -15.94 8.76 -34.44 -0.30 -16.24 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.24 6.11 2.83 -27.88 -0.08 6.03 16 10 H 0.05 1.53 6.59 -51.93 -0.34 1.19 16 11 O -0.55 -14.57 12.63 -35.23 -0.44 -15.01 16 12 C 0.03 0.69 4.57 -3.82 -0.02 0.67 16 13 N -0.52 -9.68 4.51 -234.69 -1.06 -10.74 16 14 C 0.05 0.77 5.44 -3.84 -0.02 0.75 16 15 C -0.11 -1.43 6.09 -26.65 -0.16 -1.59 16 16 C -0.14 -1.81 5.62 -26.61 -0.15 -1.96 16 17 C 0.10 1.48 2.77 -26.65 -0.07 1.41 16 18 H 0.07 1.12 7.79 -51.93 -0.40 0.72 16 19 O -0.38 -5.88 9.99 -35.23 -0.35 -6.24 16 20 C 0.09 1.18 6.03 37.16 0.22 1.40 16 21 C -0.15 -1.66 6.05 -90.63 -0.55 -2.21 16 22 C -0.18 -1.63 10.18 -26.70 -0.27 -1.90 16 23 C -0.18 -1.56 10.25 -26.70 -0.27 -1.83 16 24 C 0.06 1.15 4.96 -3.84 -0.02 1.13 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.34 8.04 9.04 45.56 0.41 8.45 16 27 H 0.03 0.60 8.05 -51.93 -0.42 0.18 16 28 H 0.06 1.29 7.87 -51.93 -0.41 0.88 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 1.04 7.96 -51.93 -0.41 0.63 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.68 7.94 -51.93 -0.41 0.27 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.05 0.51 7.67 -51.93 -0.40 0.12 16 37 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.85 6.46 -51.93 -0.34 1.51 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -30.61 344.61 -9.66 -40.28 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.90 Total: 7.33 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.79 Total: -12.15 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.35 Total: -35.67 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.80 Total: -21.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.61 -9.66 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335832980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.461 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds