Wall clock time and date at job start Mon Mar 30 2020 01:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00149 * 2 1 4 4 H 1.48497 * 109.47477 * 240.00076 * 3 2 1 5 5 H 1.48502 * 109.46799 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47031 * 120.00049 * 3 2 1 7 7 C 1.37882 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99484 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46993 * 299.99563 * 9 7 2 11 11 O 1.42894 * 109.47580 * 60.00087 * 9 7 2 12 12 C 1.53004 * 109.46832 * 180.02562 * 9 7 2 13 13 N 1.46899 * 109.47098 * 178.37815 * 12 9 7 14 14 C 1.46844 * 111.00089 * 164.05892 * 13 12 9 15 15 C 1.53036 * 109.51819 * 185.82999 * 14 13 12 16 16 C 1.53119 * 109.27750 * 300.82771 * 15 14 13 17 17 C 1.53120 * 109.16257 * 57.65191 * 16 15 14 18 18 H 1.09002 * 109.50111 * 62.28316 * 17 16 15 19 19 O 1.42898 * 109.50288 * 182.36418 * 17 16 15 20 20 C 1.42899 * 114.00180 * 269.99457 * 19 17 16 21 21 C 1.52999 * 109.47564 * 179.97438 * 20 19 17 22 22 C 1.52993 * 117.50260 * 243.75354 * 21 20 19 23 23 C 1.52995 * 117.50427 * 175.09039 * 21 20 19 24 24 C 1.46827 * 110.98131 * 288.26878 * 13 12 9 25 25 H 0.97001 * 120.00024 * 359.97438 * 1 2 3 26 26 H 0.96694 * 113.99964 * 59.99393 * 11 9 7 27 27 H 1.08993 * 109.47328 * 58.37628 * 12 9 7 28 28 H 1.09001 * 109.46940 * 298.37424 * 12 9 7 29 29 H 1.09000 * 109.46362 * 65.81820 * 14 13 12 30 30 H 1.09003 * 109.46596 * 305.84272 * 14 13 12 31 31 H 1.09006 * 109.49851 * 60.76423 * 15 14 13 32 32 H 1.09001 * 109.50810 * 180.88578 * 15 14 13 33 33 H 1.09003 * 109.52025 * 177.55318 * 16 15 14 34 34 H 1.08995 * 109.52341 * 297.74397 * 16 15 14 35 35 H 1.09004 * 109.47262 * 300.00713 * 20 19 17 36 36 H 1.09001 * 109.46909 * 60.00302 * 20 19 17 37 37 H 1.09003 * 115.54585 * 29.42067 * 21 20 19 38 38 H 1.09005 * 117.50001 * 359.97438 * 22 21 20 39 39 H 1.08998 * 117.50256 * 145.01607 * 22 21 20 40 40 H 1.08994 * 117.50072 * 214.98312 * 23 21 20 41 41 H 1.09007 * 117.49672 * 359.97438 * 23 21 20 42 42 H 1.09001 * 109.46337 * 54.14886 * 24 13 12 43 43 H 1.09001 * 109.46025 * 294.16445 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 1 0.6240 -2.5574 0.8880 11 8 0.4299 -2.5741 -1.1688 12 6 2.2452 -3.6621 -0.0015 13 7 1.5111 -4.9339 0.0366 14 6 2.3818 -6.0555 -0.3380 15 6 1.5524 -7.3385 -0.4285 16 6 0.8923 -7.6104 0.9261 17 6 0.0296 -6.4068 1.3154 18 1 -0.7640 -6.2748 0.5800 19 8 -0.5463 -6.6295 2.6041 20 6 -1.8172 -7.2817 2.5679 21 6 -2.3358 -7.4681 3.9952 22 6 -2.5158 -8.9011 4.5000 23 6 -3.7415 -8.0473 4.1662 24 6 0.9033 -5.1508 1.3554 25 1 -0.4850 0.8401 0.0004 26 1 0.9223 -2.5282 -1.9997 27 1 2.8902 -3.5885 0.8741 28 1 2.8532 -3.6205 -0.9052 29 1 3.1599 -6.1785 0.4153 30 1 2.8415 -5.8513 -1.3050 31 1 0.7827 -7.2211 -1.1914 32 1 2.2016 -8.1738 -0.6912 33 1 0.2658 -8.4995 0.8540 34 1 1.6622 -7.7664 1.6816 35 1 -2.5220 -6.6730 2.0014 36 1 -1.7123 -8.2557 2.0898 37 1 -2.0094 -6.7180 4.7156 38 1 -2.2652 -9.7113 3.8151 39 1 -2.3082 -9.0938 5.5525 40 1 -4.3398 -7.6785 4.9993 41 1 -4.2972 -8.2951 3.2618 42 1 0.2891 -4.2895 1.6184 43 1 1.6884 -5.2782 2.1007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335832980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:10 Heat of formation + Delta-G solvation = -98.285088 kcal Electronic energy + Delta-G solvation = -21194.875251 eV Core-core repulsion = 18046.598132 eV Total energy + Delta-G solvation = -3148.277119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55534 -39.00325 -37.73903 -36.85992 -34.24299 -33.82137 -31.20940 -30.02400 -27.80729 -26.94786 -24.59744 -23.59303 -23.23794 -22.03622 -21.69987 -20.72998 -19.09031 -17.92846 -17.11527 -16.66867 -16.54751 -16.24794 -16.15716 -15.94475 -15.45187 -15.31399 -14.81193 -14.42434 -14.31240 -14.00220 -13.98218 -13.45839 -13.15783 -12.84250 -12.75753 -12.56217 -12.40681 -12.28318 -12.15150 -12.01721 -11.90155 -11.68177 -11.59950 -11.28562 -11.11747 -10.94206 -10.68714 -10.35948 -10.08743 -9.14513 -8.12504 -6.39274 1.40503 1.42675 1.50786 2.31634 2.40974 2.89041 3.13255 3.23473 3.76096 3.79719 3.88918 3.96482 4.01255 4.10333 4.18863 4.29248 4.29563 4.34211 4.47358 4.49030 4.58366 4.59110 4.68379 4.71443 4.76725 4.79706 4.93785 4.97093 4.99963 5.02657 5.04049 5.13789 5.23453 5.23849 5.38552 5.60344 5.74804 5.97854 6.16351 6.21886 6.37505 6.74429 7.35329 7.64396 8.91899 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020134 B = 0.004184 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.320967 B = 6690.071967 C = 7687.678226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.591 4.591 8 H 0.060 0.940 9 C 0.239 3.761 10 H 0.013 0.987 11 O -0.570 6.570 12 C 0.050 3.950 13 N -0.533 5.533 14 C 0.048 3.952 15 C -0.106 4.106 16 C -0.130 4.130 17 C 0.101 3.899 18 H 0.060 0.940 19 O -0.401 6.401 20 C 0.092 3.908 21 C -0.177 4.177 22 C -0.168 4.168 23 C -0.165 4.165 24 C 0.066 3.934 25 H 0.261 0.739 26 H 0.353 0.647 27 H 0.024 0.976 28 H 0.077 0.923 29 H 0.031 0.969 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.047 0.953 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 -18.918 3.399 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.786 3.214 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.629 4.629 8 H 0.079 0.921 9 C 0.181 3.819 10 H 0.031 0.969 11 O -0.373 6.373 12 C -0.078 4.078 13 N -0.259 5.259 14 C -0.080 4.080 15 C -0.143 4.143 16 C -0.168 4.168 17 C 0.043 3.957 18 H 0.078 0.922 19 O -0.320 6.320 20 C 0.016 3.984 21 C -0.195 4.195 22 C -0.205 4.205 23 C -0.202 4.202 24 C -0.062 4.062 25 H 0.070 0.930 26 H 0.197 0.803 27 H 0.042 0.958 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.066 0.934 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.834 -18.800 3.696 19.247 hybrid contribution 1.231 1.350 0.246 1.844 sum -0.603 -17.449 3.942 17.899 Atomic orbital electron populations 1.70227 1.07763 1.27411 1.48308 1.25920 0.95471 1.02983 0.93315 0.85594 0.78344 0.78355 0.79155 1.18905 1.21005 1.19456 1.22046 0.93584 0.92820 1.54486 0.92145 1.19122 0.87763 0.90105 0.84889 0.96886 1.86505 1.38640 1.96456 1.15671 1.22698 0.95679 0.89380 1.00069 1.61766 1.34525 1.02498 1.27125 1.22288 0.94086 0.90901 1.00710 1.21528 0.99721 0.96478 0.96614 1.22012 0.99506 0.97355 0.97940 1.21954 0.95153 0.94238 0.84345 0.92192 1.87824 1.35225 1.80039 1.28921 1.22149 0.83876 0.96546 0.95832 1.22122 1.01654 0.98832 0.96917 1.23163 1.01723 0.92817 1.02770 1.23085 0.89955 1.02944 1.04170 1.21870 0.97228 0.97162 0.89958 0.93008 0.80319 0.95798 0.90412 0.95113 0.89848 0.91302 0.88399 0.90006 0.91613 0.93545 0.91681 0.88438 0.87801 0.87858 0.87524 0.87748 0.93437 0.95278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.26 12.84 21.45 0.28 -54.98 16 2 C 0.03 1.46 5.40 84.66 0.46 1.91 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.59 -33.21 8.76 25.60 0.22 -32.99 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.24 12.71 2.83 29.85 0.08 12.79 16 10 H 0.01 0.81 6.59 -2.39 -0.02 0.79 16 11 O -0.57 -30.83 12.63 -148.98 -1.88 -32.71 16 12 C 0.05 2.10 4.57 86.30 0.39 2.49 16 13 N -0.53 -19.80 4.51 -896.41 -4.04 -23.84 16 14 C 0.05 1.34 5.44 86.33 0.47 1.81 16 15 C -0.11 -2.37 6.09 30.65 0.19 -2.19 16 16 C -0.13 -3.11 5.62 30.67 0.17 -2.94 16 17 C 0.10 3.15 2.77 30.65 0.08 3.23 16 18 H 0.06 1.96 7.79 -2.39 -0.02 1.94 16 19 O -0.40 -12.61 9.99 -148.98 -1.49 -14.10 16 20 C 0.09 2.28 6.03 71.98 0.43 2.71 16 21 C -0.18 -3.86 6.05 -10.80 -0.07 -3.92 16 22 C -0.17 -2.73 10.18 30.61 0.31 -2.41 16 23 C -0.16 -2.68 10.25 30.62 0.31 -2.37 16 24 C 0.07 2.51 4.96 86.33 0.43 2.94 16 25 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 26 H 0.35 16.85 9.04 -74.06 -0.67 16.18 16 27 H 0.02 1.02 8.05 -2.39 -0.02 1.00 16 28 H 0.08 3.06 7.87 -2.39 -0.02 3.04 16 29 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 2.17 7.96 -2.39 -0.02 2.15 16 31 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.62 7.94 -2.39 -0.02 1.60 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.19 8.09 -2.38 -0.02 1.17 16 36 H 0.07 1.34 7.67 -2.39 -0.02 1.32 16 37 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.10 1.48 8.03 -2.38 -0.02 1.46 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.10 1.50 8.14 -2.38 -0.02 1.49 16 42 H 0.05 2.15 6.46 -2.39 -0.02 2.14 16 43 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -67.50 344.61 -1.31 -68.81 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.30 Total: 29.78 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 3.50 Total: -18.93 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -3.77 Total: -78.82 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -3.37 Total: -46.81 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.50 -1.31 -68.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335832980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.471 kcal (2) G-P(sol) polarization free energy of solvation -67.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds