Wall clock time and date at job start Mon Mar 30 2020 01:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99972 * 2 1 4 4 H 1.48500 * 109.47047 * 240.00481 * 3 2 1 5 5 H 1.48500 * 109.47331 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47251 * 120.00141 * 3 2 1 7 7 C 1.37872 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00280 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00154 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47215 * 300.00537 * 9 7 2 11 11 O 1.42903 * 109.46841 * 60.00308 * 9 7 2 12 12 C 1.52998 * 109.47355 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.47162 * 180.66279 * 12 9 7 14 14 C 1.46838 * 111.00173 * 293.88102 * 13 12 9 15 15 C 1.53040 * 109.52469 * 174.16167 * 14 13 12 16 16 C 1.53122 * 109.27714 * 59.17854 * 15 14 13 17 17 C 1.53116 * 109.15917 * 302.34637 * 16 15 14 18 18 H 1.08997 * 109.50737 * 297.71362 * 17 16 15 19 19 O 1.42904 * 109.50225 * 177.63211 * 17 16 15 20 20 C 1.42904 * 113.99578 * 90.00182 * 19 17 16 21 21 C 1.53004 * 109.47084 * 180.02562 * 20 19 17 22 22 C 1.52996 * 117.49881 * 243.74805 * 21 20 19 23 23 C 1.52994 * 117.50131 * 175.08962 * 21 20 19 24 24 C 1.46849 * 110.99524 * 169.67184 * 13 12 9 25 25 H 0.97005 * 120.00241 * 359.97438 * 1 2 3 26 26 H 0.96703 * 114.00137 * 59.99945 * 11 9 7 27 27 H 1.08997 * 109.47107 * 300.66993 * 12 9 7 28 28 H 1.09001 * 109.46649 * 60.66550 * 12 9 7 29 29 H 1.09004 * 109.46928 * 294.17678 * 14 13 12 30 30 H 1.09000 * 109.46309 * 54.14631 * 14 13 12 31 31 H 1.08994 * 109.50616 * 179.12270 * 15 14 13 32 32 H 1.09008 * 109.49976 * 299.20127 * 15 14 13 33 33 H 1.08993 * 109.52124 * 62.25412 * 16 15 14 34 34 H 1.08998 * 109.51913 * 182.44133 * 16 15 14 35 35 H 1.09000 * 109.47129 * 300.00006 * 20 19 17 36 36 H 1.08999 * 109.47149 * 60.00403 * 20 19 17 37 37 H 1.09003 * 115.54548 * 29.41356 * 21 20 19 38 38 H 1.09003 * 117.49778 * 359.97438 * 22 21 20 39 39 H 1.09002 * 117.50095 * 145.01800 * 22 21 20 40 40 H 1.08995 * 117.50091 * 214.98257 * 23 21 20 41 41 H 1.09007 * 117.49671 * 359.97299 * 23 21 20 42 42 H 1.09004 * 109.46513 * 305.85640 * 24 13 12 43 43 H 1.08999 * 109.46528 * 65.82879 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1671 12 6 2.2452 -3.6621 -0.0018 13 7 1.5107 -4.9342 -0.0178 14 6 0.7570 -5.1224 1.2282 15 6 -0.1070 -6.3808 1.1182 16 6 0.7937 -7.5912 0.8569 17 6 1.6032 -7.3488 -0.4200 18 1 0.9251 -7.2505 -1.2677 19 8 2.4868 -8.4499 -0.6410 20 6 1.9223 -9.4986 -1.4307 21 6 2.9506 -10.6187 -1.6013 22 6 3.4478 -10.9114 -3.0183 23 6 2.4978 -11.8895 -2.3228 24 6 2.4177 -6.0623 -0.2654 25 1 -0.4851 0.8401 0.0004 26 1 0.9209 -2.5290 -1.9984 27 1 2.8790 -3.5972 -0.8862 28 1 2.8646 -3.6114 0.8936 29 1 1.4523 -5.2310 2.0606 30 1 0.1174 -4.2567 1.4000 31 1 -0.6545 -6.5288 2.0489 32 1 -0.8126 -6.2670 0.2951 33 1 1.4729 -7.7282 1.6983 34 1 0.1791 -8.4830 0.7347 35 1 1.0363 -9.8921 -0.9323 36 1 1.6450 -9.1074 -2.4095 37 1 3.6637 -10.7305 -0.7845 38 1 3.0420 -10.3063 -3.8291 39 1 4.4879 -11.2162 -3.1338 40 1 2.9132 -12.8375 -1.9811 41 1 1.4671 -11.9279 -2.6757 42 1 2.9843 -5.8792 -1.1784 43 1 3.1053 -6.1665 0.5739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335832990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:13 Heat of formation + Delta-G solvation = -76.699838 kcal Electronic energy + Delta-G solvation = -21027.993106 eV Core-core repulsion = 17880.651993 eV Total energy + Delta-G solvation = -3147.341113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.34687 -37.96893 -36.54514 -35.18899 -32.47989 -32.02470 -30.05930 -28.10922 -26.90508 -25.13338 -22.77561 -22.71125 -22.57821 -20.96603 -20.19482 -19.44971 -17.16770 -16.74726 -15.97855 -15.50396 -14.85807 -14.80929 -14.60344 -14.49509 -14.26339 -13.77708 -13.39815 -13.22800 -13.01169 -12.80522 -12.32806 -12.26919 -11.83084 -11.44429 -11.16732 -11.08450 -10.90252 -10.83300 -10.80876 -10.73744 -10.72509 -10.34679 -10.31304 -10.22876 -10.01999 -9.34476 -8.94741 -8.53848 -8.07863 -7.62889 -5.98385 -4.16718 3.29088 3.30173 3.35437 3.37361 3.64461 4.36192 4.49878 4.62376 4.63126 4.87062 4.92163 4.98703 5.12091 5.22408 5.27324 5.29293 5.34502 5.44465 5.48065 5.58976 5.61698 5.75457 5.82181 5.86001 5.93388 5.97132 6.01174 6.09802 6.11266 6.19922 6.33817 6.48319 6.50034 6.62695 6.84128 7.24188 7.58814 7.64081 7.80798 7.90678 8.22720 8.87049 9.48793 9.65182 11.05673 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035306 B = 0.003393 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.883232 B = 8250.977956 C = 8645.693517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.238 3.762 10 H 0.055 0.945 11 O -0.554 6.554 12 C 0.033 3.967 13 N -0.524 5.524 14 C 0.053 3.947 15 C -0.113 4.113 16 C -0.139 4.139 17 C 0.096 3.904 18 H 0.069 0.931 19 O -0.383 6.383 20 C 0.095 3.905 21 C -0.151 4.151 22 C -0.178 4.178 23 C -0.176 4.176 24 C 0.061 3.939 25 H 0.261 0.739 26 H 0.342 0.658 27 H 0.064 0.936 28 H 0.027 0.973 29 H 0.025 0.975 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 -19.823 -1.912 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.180 3.820 10 H 0.072 0.928 11 O -0.355 6.355 12 C -0.095 4.095 13 N -0.249 5.249 14 C -0.075 4.075 15 C -0.151 4.151 16 C -0.176 4.176 17 C 0.038 3.962 18 H 0.087 0.913 19 O -0.301 6.301 20 C 0.018 3.982 21 C -0.170 4.170 22 C -0.215 4.215 23 C -0.213 4.213 24 C -0.068 4.068 25 H 0.070 0.930 26 H 0.185 0.815 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.130 0.870 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.251 -19.755 -1.756 19.960 hybrid contribution 1.407 0.929 0.261 1.706 sum 3.658 -18.826 -1.495 19.237 Atomic orbital electron populations 1.70073 1.05890 1.26485 1.46986 1.25017 0.94691 0.99044 0.93874 0.86735 0.79712 0.83226 0.78665 1.20140 1.21205 1.20236 1.21626 0.93127 0.91647 1.54939 0.92791 1.19317 0.87760 0.88423 0.86518 0.92773 1.86553 1.37718 1.96297 1.14978 1.23084 0.97313 0.89416 0.99640 1.61848 1.26630 1.01507 1.34926 1.22133 0.96770 0.98548 0.90054 1.21537 0.97928 0.93652 1.01977 1.22071 0.98688 0.98428 0.98462 1.22071 0.91224 0.85778 0.97157 0.91302 1.87846 1.40963 1.29200 1.72139 1.21993 0.94552 0.87215 0.94465 1.22154 1.02095 0.96093 0.96625 1.23081 0.99735 1.03164 0.95487 1.22978 1.00246 0.93872 1.04244 1.21977 0.94019 0.89695 1.01087 0.92957 0.81455 0.91760 0.95489 0.95684 0.89385 0.91562 0.90910 0.91698 0.92252 0.93108 0.93165 0.86962 0.88585 0.88673 0.88521 0.88684 0.90684 0.94952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.43 12.84 55.43 0.71 -24.72 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.57 -15.81 8.76 -34.44 -0.30 -16.11 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.24 6.02 2.70 -27.88 -0.08 5.95 16 10 H 0.05 1.50 6.47 -51.93 -0.34 1.16 16 11 O -0.55 -14.44 12.58 -35.23 -0.44 -14.89 16 12 C 0.03 0.68 4.56 -3.82 -0.02 0.67 16 13 N -0.52 -9.67 4.51 -234.67 -1.06 -10.73 16 14 C 0.05 0.92 5.29 -3.84 -0.02 0.90 16 15 C -0.11 -1.60 6.09 -26.65 -0.16 -1.77 16 16 C -0.14 -1.81 5.62 -26.61 -0.15 -1.96 16 17 C 0.10 1.35 2.77 -26.65 -0.07 1.28 16 18 H 0.07 0.99 7.79 -51.93 -0.40 0.58 16 19 O -0.38 -5.24 9.99 -35.23 -0.35 -5.59 16 20 C 0.09 1.03 6.03 37.16 0.22 1.25 16 21 C -0.15 -1.44 6.05 -90.62 -0.55 -1.99 16 22 C -0.18 -1.47 10.18 -26.70 -0.27 -1.74 16 23 C -0.18 -1.33 10.25 -26.70 -0.27 -1.60 16 24 C 0.06 0.98 5.11 -3.83 -0.02 0.96 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.34 8.07 9.04 45.56 0.41 8.48 16 27 H 0.06 1.31 7.98 -51.93 -0.41 0.90 16 28 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 1.72 6.24 -51.93 -0.32 1.40 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.68 7.93 -51.93 -0.41 0.27 16 35 H 0.05 0.51 7.94 -51.93 -0.41 0.10 16 36 H 0.05 0.53 7.82 -51.93 -0.41 0.12 16 37 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.10 0.78 8.03 -51.93 -0.42 0.36 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.20 8.01 -51.93 -0.42 0.79 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -30.14 344.31 -9.66 -39.80 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.90 Total: 6.78 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.79 Total: -12.03 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.35 Total: -35.45 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.80 Total: -20.48 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.14 -9.66 -39.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335832990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.898 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds