Wall clock time and date at job start Mon Mar 30 2020 01:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99972 * 2 1 4 4 H 1.48500 * 109.47047 * 240.00481 * 3 2 1 5 5 H 1.48500 * 109.47331 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47251 * 120.00141 * 3 2 1 7 7 C 1.37872 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00280 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00154 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47215 * 300.00537 * 9 7 2 11 11 O 1.42903 * 109.46841 * 60.00308 * 9 7 2 12 12 C 1.52998 * 109.47355 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.47162 * 180.66279 * 12 9 7 14 14 C 1.46838 * 111.00173 * 293.88102 * 13 12 9 15 15 C 1.53040 * 109.52469 * 174.16167 * 14 13 12 16 16 C 1.53122 * 109.27714 * 59.17854 * 15 14 13 17 17 C 1.53116 * 109.15917 * 302.34637 * 16 15 14 18 18 H 1.08997 * 109.50737 * 297.71362 * 17 16 15 19 19 O 1.42904 * 109.50225 * 177.63211 * 17 16 15 20 20 C 1.42904 * 113.99578 * 90.00182 * 19 17 16 21 21 C 1.53004 * 109.47084 * 180.02562 * 20 19 17 22 22 C 1.52996 * 117.49881 * 243.74805 * 21 20 19 23 23 C 1.52994 * 117.50131 * 175.08962 * 21 20 19 24 24 C 1.46849 * 110.99524 * 169.67184 * 13 12 9 25 25 H 0.97005 * 120.00241 * 359.97438 * 1 2 3 26 26 H 0.96703 * 114.00137 * 59.99945 * 11 9 7 27 27 H 1.08997 * 109.47107 * 300.66993 * 12 9 7 28 28 H 1.09001 * 109.46649 * 60.66550 * 12 9 7 29 29 H 1.09004 * 109.46928 * 294.17678 * 14 13 12 30 30 H 1.09000 * 109.46309 * 54.14631 * 14 13 12 31 31 H 1.08994 * 109.50616 * 179.12270 * 15 14 13 32 32 H 1.09008 * 109.49976 * 299.20127 * 15 14 13 33 33 H 1.08993 * 109.52124 * 62.25412 * 16 15 14 34 34 H 1.08998 * 109.51913 * 182.44133 * 16 15 14 35 35 H 1.09000 * 109.47129 * 300.00006 * 20 19 17 36 36 H 1.08999 * 109.47149 * 60.00403 * 20 19 17 37 37 H 1.09003 * 115.54548 * 29.41356 * 21 20 19 38 38 H 1.09003 * 117.49778 * 359.97438 * 22 21 20 39 39 H 1.09002 * 117.50095 * 145.01800 * 22 21 20 40 40 H 1.08995 * 117.50091 * 214.98257 * 23 21 20 41 41 H 1.09007 * 117.49671 * 359.97299 * 23 21 20 42 42 H 1.09004 * 109.46513 * 305.85640 * 24 13 12 43 43 H 1.08999 * 109.46528 * 65.82879 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1671 12 6 2.2452 -3.6621 -0.0018 13 7 1.5107 -4.9342 -0.0178 14 6 0.7570 -5.1224 1.2282 15 6 -0.1070 -6.3808 1.1182 16 6 0.7937 -7.5912 0.8569 17 6 1.6032 -7.3488 -0.4200 18 1 0.9251 -7.2505 -1.2677 19 8 2.4868 -8.4499 -0.6410 20 6 1.9223 -9.4986 -1.4307 21 6 2.9506 -10.6187 -1.6013 22 6 3.4478 -10.9114 -3.0183 23 6 2.4978 -11.8895 -2.3228 24 6 2.4177 -6.0623 -0.2654 25 1 -0.4851 0.8401 0.0004 26 1 0.9209 -2.5290 -1.9984 27 1 2.8790 -3.5972 -0.8862 28 1 2.8646 -3.6114 0.8936 29 1 1.4523 -5.2310 2.0606 30 1 0.1174 -4.2567 1.4000 31 1 -0.6545 -6.5288 2.0489 32 1 -0.8126 -6.2670 0.2951 33 1 1.4729 -7.7282 1.6983 34 1 0.1791 -8.4830 0.7347 35 1 1.0363 -9.8921 -0.9323 36 1 1.6450 -9.1074 -2.4095 37 1 3.6637 -10.7305 -0.7845 38 1 3.0420 -10.3063 -3.8291 39 1 4.4879 -11.2162 -3.1338 40 1 2.9132 -12.8375 -1.9811 41 1 1.4671 -11.9279 -2.6757 42 1 2.9843 -5.8792 -1.1784 43 1 3.1053 -6.1665 0.5739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335832990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:12 Heat of formation + Delta-G solvation = -97.431783 kcal Electronic energy + Delta-G solvation = -21028.892111 eV Core-core repulsion = 17880.651993 eV Total energy + Delta-G solvation = -3148.240117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.54727 -39.01749 -37.75226 -36.78600 -34.23511 -33.81623 -31.31063 -29.92218 -27.79645 -26.93981 -24.36931 -23.89839 -23.24025 -21.97844 -21.67198 -20.69540 -19.08955 -17.85766 -17.08261 -16.66841 -16.51347 -16.38705 -16.06384 -15.92518 -15.54249 -15.15074 -14.74427 -14.63475 -14.31135 -14.02782 -13.88874 -13.51594 -13.14600 -12.83766 -12.76601 -12.49454 -12.40043 -12.27807 -12.11957 -12.05148 -11.92171 -11.70086 -11.54784 -11.30781 -11.06595 -10.93835 -10.66784 -10.34686 -10.07040 -9.16541 -8.12372 -6.38429 1.41186 1.42823 1.50964 2.30558 2.42343 2.89771 3.13271 3.24285 3.76688 3.80460 3.90180 3.96818 4.02301 4.10317 4.21526 4.30023 4.32845 4.35444 4.46115 4.52732 4.57206 4.58214 4.66998 4.69856 4.78458 4.80442 4.91189 4.96832 5.01008 5.02564 5.04192 5.15103 5.24396 5.25511 5.37112 5.61207 5.75648 6.00303 6.16545 6.19361 6.37318 6.74511 7.35658 7.63397 8.91822 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035306 B = 0.003393 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.883232 B = 8250.977956 C = 8645.693517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.591 4.591 8 H 0.058 0.942 9 C 0.240 3.760 10 H 0.023 0.977 11 O -0.569 6.569 12 C 0.049 3.951 13 N -0.531 5.531 14 C 0.052 3.948 15 C -0.105 4.105 16 C -0.131 4.131 17 C 0.102 3.898 18 H 0.067 0.933 19 O -0.396 6.396 20 C 0.091 3.909 21 C -0.169 4.169 22 C -0.181 4.181 23 C -0.161 4.161 24 C 0.062 3.938 25 H 0.261 0.739 26 H 0.352 0.648 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.028 0.972 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.760 -21.178 -2.224 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.629 4.629 8 H 0.076 0.924 9 C 0.182 3.818 10 H 0.041 0.959 11 O -0.372 6.372 12 C -0.079 4.079 13 N -0.257 5.257 14 C -0.076 4.076 15 C -0.143 4.143 16 C -0.169 4.169 17 C 0.044 3.956 18 H 0.085 0.915 19 O -0.315 6.315 20 C 0.014 3.986 21 C -0.188 4.188 22 C -0.218 4.218 23 C -0.197 4.197 24 C -0.066 4.066 25 H 0.070 0.930 26 H 0.196 0.804 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.974 -21.132 -2.073 21.441 hybrid contribution 1.185 1.290 0.342 1.785 sum 4.160 -19.843 -1.731 20.348 Atomic orbital electron populations 1.70215 1.07612 1.27412 1.48269 1.25887 0.95500 1.02852 0.93373 0.85612 0.78360 0.78503 0.79077 1.19176 1.20957 1.19440 1.22026 0.93519 0.92856 1.54478 0.92380 1.19155 0.87718 0.89762 0.85192 0.95941 1.86498 1.38560 1.96433 1.15665 1.22701 0.96043 0.89443 0.99707 1.61773 1.26927 1.01308 1.35660 1.22140 0.96709 0.99043 0.89745 1.21488 0.97490 0.92467 1.02865 1.22009 0.98525 0.98549 0.97787 1.21909 0.90804 0.85161 0.97724 0.91482 1.87826 1.41377 1.29521 1.72739 1.22167 0.95341 0.86791 0.94264 1.22132 1.02429 0.97023 0.97167 1.23167 1.00478 1.03502 0.94688 1.23078 1.00620 0.93515 1.02536 1.21981 0.93889 0.89870 1.00849 0.92975 0.80388 0.91220 0.95779 0.95333 0.92462 0.89451 0.91586 0.91660 0.89973 0.92059 0.92980 0.87684 0.88591 0.88020 0.87224 0.87817 0.90796 0.95162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.13 12.84 21.45 0.28 -53.85 16 2 C 0.03 1.49 5.40 84.65 0.46 1.95 16 3 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.59 -32.79 8.76 25.60 0.22 -32.56 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.24 12.45 2.70 29.85 0.08 12.53 16 10 H 0.02 1.32 6.47 -2.39 -0.02 1.30 16 11 O -0.57 -30.31 12.58 -148.98 -1.87 -32.18 16 12 C 0.05 2.07 4.56 86.30 0.39 2.47 16 13 N -0.53 -19.67 4.51 -896.36 -4.04 -23.71 16 14 C 0.05 1.80 5.29 86.33 0.46 2.26 16 15 C -0.11 -2.86 6.09 30.65 0.19 -2.67 16 16 C -0.13 -3.15 5.62 30.67 0.17 -2.98 16 17 C 0.10 2.74 2.77 30.65 0.08 2.82 16 18 H 0.07 1.82 7.79 -2.39 -0.02 1.81 16 19 O -0.40 -10.23 9.99 -148.98 -1.49 -11.72 16 20 C 0.09 1.81 6.03 71.98 0.43 2.24 16 21 C -0.17 -2.94 6.05 -10.80 -0.07 -3.01 16 22 C -0.18 -2.68 10.18 30.61 0.31 -2.37 16 23 C -0.16 -2.03 10.25 30.61 0.31 -1.71 16 24 C 0.06 1.96 5.11 86.33 0.44 2.40 16 25 H 0.26 14.92 8.31 -92.70 -0.77 14.14 16 26 H 0.35 16.84 9.04 -74.06 -0.67 16.17 16 27 H 0.07 2.84 7.98 -2.39 -0.02 2.82 16 28 H 0.02 1.02 8.12 -2.39 -0.02 1.00 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 2.34 6.24 -2.39 -0.01 2.33 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.64 7.93 -2.39 -0.02 1.62 16 35 H 0.06 1.08 7.94 -2.39 -0.02 1.06 16 36 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 37 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.10 1.41 8.03 -2.39 -0.02 1.39 16 39 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.07 2.32 8.01 -2.39 -0.02 2.30 16 43 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -64.41 344.31 -1.31 -65.72 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.30 Total: 28.79 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 3.49 Total: -18.64 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -3.77 Total: -77.56 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -3.36 Total: -43.91 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -64.41 -1.31 -65.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335832990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.715 kcal (2) G-P(sol) polarization free energy of solvation -64.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds