Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 120.00107 * 2 1 4 4 H 1.48498 * 109.47127 * 239.99912 * 3 2 1 5 5 H 1.48497 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47080 * 120.00017 * 3 2 1 7 7 C 1.37875 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00455 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47327 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46813 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.46624 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00521 * 359.73045 * 13 12 11 15 15 N 1.34784 * 119.99774 * 180.02562 * 13 12 11 16 16 C 1.47606 * 118.64027 * 359.45744 * 15 13 12 17 17 C 1.54297 * 111.94059 * 137.77931 * 16 15 13 18 18 C 1.50888 * 110.23637 * 319.70077 * 17 16 15 19 19 C 1.52571 * 109.35792 * 91.79368 * 18 17 16 20 20 H 1.09001 * 108.50707 * 36.24714 * 19 18 17 21 21 O 1.42902 * 108.38801 * 153.82275 * 19 18 17 22 22 C 1.47082 * 114.32893 * 274.99204 * 19 18 17 23 23 C 1.44572 * 118.64569 * 179.72890 * 15 13 12 24 24 H 0.97000 * 119.99626 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47519 * 59.99714 * 9 7 2 26 26 H 1.09006 * 109.47270 * 299.99945 * 9 7 2 27 27 H 1.08998 * 109.47065 * 59.99424 * 10 9 7 28 28 H 1.09001 * 109.46892 * 299.99688 * 10 9 7 29 29 H 1.09001 * 109.46902 * 60.00345 * 11 10 9 30 30 H 1.08993 * 109.47243 * 300.00020 * 11 10 9 31 31 H 1.09001 * 109.46782 * 60.00667 * 12 11 10 32 32 H 1.08993 * 109.47555 * 300.00224 * 12 11 10 33 33 H 1.09000 * 108.94566 * 258.57313 * 16 15 13 34 34 H 1.09000 * 108.94930 * 17.20592 * 16 15 13 35 35 H 1.08994 * 109.37045 * 199.42456 * 17 16 15 36 36 H 1.08998 * 109.12592 * 79.82308 * 17 16 15 37 37 H 1.09001 * 109.48871 * 331.83351 * 18 17 16 38 38 H 1.08991 * 109.50819 * 211.77964 * 18 17 16 39 39 H 0.96691 * 113.99995 * 184.69068 * 21 19 18 40 40 H 1.09004 * 109.32919 * 302.53823 * 22 19 18 41 41 H 1.09003 * 109.33174 * 183.06348 * 22 19 18 42 42 H 1.09003 * 109.45153 * 30.73906 * 23 15 13 43 43 H 1.08997 * 109.45235 * 150.66235 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 6 2.4744 -6.1501 0.0031 13 6 1.7209 -7.4551 0.0044 14 8 0.5080 -7.4551 0.0097 15 7 2.3947 -8.6224 0.0056 16 6 3.8703 -8.5875 -0.0065 17 6 4.4796 -9.6279 0.9563 18 6 3.6846 -9.6816 2.2377 19 6 2.6019 -10.7497 2.1167 20 1 3.0010 -11.5829 1.5383 21 8 2.2846 -11.2204 3.4281 22 6 1.3627 -10.2863 1.4743 23 6 1.6425 -9.8569 0.0129 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8713 -3.6040 0.8922 28 1 2.8725 -3.6048 -0.8877 29 1 0.8539 -5.0455 -0.8878 30 1 0.8532 -5.0442 0.8922 31 1 3.1010 -6.0919 0.8932 32 1 3.1012 -6.0928 -0.8868 33 1 4.2208 -8.7891 -1.0188 34 1 4.2033 -7.5928 0.2900 35 1 5.5098 -9.3523 1.1815 36 1 4.4635 -10.6080 0.4797 37 1 3.2204 -8.7121 2.4185 38 1 4.3474 -9.9277 3.0672 39 1 1.6548 -11.9540 3.4410 40 1 0.9640 -9.4373 2.0297 41 1 0.6300 -11.0933 1.4792 42 1 0.6971 -9.7090 -0.5092 43 1 2.2167 -10.6348 -0.4904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347747810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = -114.860260 kcal Electronic energy + Delta-G solvation = -20890.457915 eV Core-core repulsion = 17741.462043 eV Total energy + Delta-G solvation = -3148.995873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.60111 -38.52791 -36.22875 -34.93896 -33.14004 -32.85935 -32.17664 -29.68793 -27.07862 -26.01863 -24.80553 -22.76506 -21.56713 -20.86656 -19.99038 -18.83507 -17.80925 -16.98975 -16.29394 -16.14476 -15.92024 -15.27102 -14.92240 -14.55964 -14.43850 -13.93455 -13.61941 -13.53492 -12.88688 -12.60034 -12.48965 -12.11190 -11.88062 -11.85128 -11.73730 -11.58931 -11.47867 -11.23588 -10.95283 -10.84863 -10.51809 -10.50055 -10.36686 -10.23833 -9.73074 -9.58603 -9.19683 -8.96773 -8.79544 -8.28292 -5.93215 -3.95825 2.68795 2.89027 3.36626 3.40935 3.43177 3.82652 4.25763 4.39868 4.50332 4.54044 4.69769 4.74660 4.88898 4.90072 5.11662 5.22128 5.27890 5.30815 5.36683 5.41368 5.42415 5.53085 5.59684 5.66372 5.77173 5.87610 5.91599 5.99958 6.16000 6.31754 6.47820 6.58834 6.86438 7.03587 7.20222 7.26646 7.32388 7.75977 7.92492 8.08304 8.23242 8.49964 9.11749 9.67653 11.18110 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034461 B = 0.003033 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.307346 B = 9230.513956 C = 9401.838362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.139 4.139 13 C 0.509 3.491 14 O -0.532 6.532 15 N -0.616 5.616 16 C 0.103 3.897 17 C -0.129 4.129 18 C -0.112 4.112 19 C 0.112 3.888 20 H 0.045 0.955 21 O -0.573 6.573 22 C -0.170 4.170 23 C 0.121 3.879 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.375 0.625 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.037 -25.351 1.185 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.179 4.179 13 C 0.298 3.702 14 O -0.408 6.408 15 N -0.350 5.350 16 C -0.019 4.019 17 C -0.168 4.168 18 C -0.149 4.149 19 C 0.054 3.946 20 H 0.063 0.937 21 O -0.379 6.379 22 C -0.209 4.209 23 C -0.002 4.002 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.222 0.778 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.655 -24.769 1.342 26.272 hybrid contribution 0.093 0.397 -0.173 0.443 sum 8.748 -24.372 1.169 25.920 Atomic orbital electron populations 1.69971 1.06049 1.26605 1.50871 1.25043 0.94842 0.99214 0.95466 0.86668 0.79572 0.83260 0.78539 1.20298 1.21325 1.20276 1.21251 0.92943 0.91229 1.50499 0.92809 1.19090 0.94055 0.91250 0.97295 1.21647 0.99069 0.94021 1.00016 1.21463 0.97039 0.92749 1.02917 1.21849 1.00123 0.92216 1.03700 1.21180 0.88283 0.85719 0.74969 1.90697 1.14168 1.87355 1.48531 1.47822 1.06435 1.06051 1.74729 1.22139 0.78985 1.01163 0.99628 1.21757 0.99884 0.99749 0.95370 1.21016 0.96807 0.99161 0.97949 1.20772 0.94543 0.95899 0.83383 0.93690 1.86588 1.67121 1.55241 1.28967 1.21962 0.98240 1.02928 0.97779 1.21217 0.97506 0.85994 0.95531 0.92995 0.96612 0.96610 0.93511 0.93501 0.91842 0.91847 0.89172 0.89197 0.91452 0.89206 0.89767 0.91406 0.90837 0.90556 0.77822 0.90373 0.90770 0.89481 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.14 -1.89 4.02 -27.88 -0.11 -2.00 16 13 C 0.51 7.25 7.62 -10.98 -0.08 7.17 16 14 O -0.53 -9.75 15.42 5.56 0.09 -9.66 16 15 N -0.62 -6.45 2.23 -172.32 -0.38 -6.83 16 16 C 0.10 0.76 5.99 -2.76 -0.02 0.74 16 17 C -0.13 -0.79 5.71 -27.11 -0.15 -0.95 16 18 C -0.11 -0.94 5.15 -28.01 -0.14 -1.09 16 19 C 0.11 0.93 2.88 -29.79 -0.09 0.84 16 20 H 0.05 0.30 7.36 -51.93 -0.38 -0.08 16 21 O -0.57 -5.26 13.15 -35.23 -0.46 -5.73 16 22 C -0.17 -1.54 5.23 -28.59 -0.15 -1.69 16 23 C 0.12 1.13 5.38 -4.09 -0.02 1.11 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.09 1.07 7.43 -51.93 -0.39 0.69 16 32 H 0.09 1.05 8.01 -51.93 -0.42 0.63 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.64 5.81 -51.93 -0.30 0.34 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.36 7.32 -51.93 -0.38 -0.02 16 37 H 0.07 0.76 7.49 -51.93 -0.39 0.37 16 38 H 0.08 0.65 8.07 -51.93 -0.42 0.24 16 39 H 0.37 1.90 9.04 45.56 0.41 2.31 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.96 7.30 -51.93 -0.38 0.59 16 43 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -35.00 339.40 -8.33 -43.33 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -6.82 Total: -2.39 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -1.58 Total: -13.83 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.35 Total: -33.86 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.38 Total: -15.39 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.00 -8.33 -43.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347747810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.532 kcal (2) G-P(sol) polarization free energy of solvation -34.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds