Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 120.00107 * 2 1 4 4 H 1.48498 * 109.47127 * 239.99912 * 3 2 1 5 5 H 1.48497 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47080 * 120.00017 * 3 2 1 7 7 C 1.37875 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00455 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47327 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46813 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.46624 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00521 * 359.73045 * 13 12 11 15 15 N 1.34784 * 119.99774 * 180.02562 * 13 12 11 16 16 C 1.47606 * 118.64027 * 359.45744 * 15 13 12 17 17 C 1.54297 * 111.94059 * 137.77931 * 16 15 13 18 18 C 1.50888 * 110.23637 * 319.70077 * 17 16 15 19 19 C 1.52571 * 109.35792 * 91.79368 * 18 17 16 20 20 H 1.09001 * 108.50707 * 36.24714 * 19 18 17 21 21 O 1.42902 * 108.38801 * 153.82275 * 19 18 17 22 22 C 1.47082 * 114.32893 * 274.99204 * 19 18 17 23 23 C 1.44572 * 118.64569 * 179.72890 * 15 13 12 24 24 H 0.97000 * 119.99626 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47519 * 59.99714 * 9 7 2 26 26 H 1.09006 * 109.47270 * 299.99945 * 9 7 2 27 27 H 1.08998 * 109.47065 * 59.99424 * 10 9 7 28 28 H 1.09001 * 109.46892 * 299.99688 * 10 9 7 29 29 H 1.09001 * 109.46902 * 60.00345 * 11 10 9 30 30 H 1.08993 * 109.47243 * 300.00020 * 11 10 9 31 31 H 1.09001 * 109.46782 * 60.00667 * 12 11 10 32 32 H 1.08993 * 109.47555 * 300.00224 * 12 11 10 33 33 H 1.09000 * 108.94566 * 258.57313 * 16 15 13 34 34 H 1.09000 * 108.94930 * 17.20592 * 16 15 13 35 35 H 1.08994 * 109.37045 * 199.42456 * 17 16 15 36 36 H 1.08998 * 109.12592 * 79.82308 * 17 16 15 37 37 H 1.09001 * 109.48871 * 331.83351 * 18 17 16 38 38 H 1.08991 * 109.50819 * 211.77964 * 18 17 16 39 39 H 0.96691 * 113.99995 * 184.69068 * 21 19 18 40 40 H 1.09004 * 109.32919 * 302.53823 * 22 19 18 41 41 H 1.09003 * 109.33174 * 183.06348 * 22 19 18 42 42 H 1.09003 * 109.45153 * 30.73906 * 23 15 13 43 43 H 1.08997 * 109.45235 * 150.66235 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 6 2.4744 -6.1501 0.0031 13 6 1.7209 -7.4551 0.0044 14 8 0.5080 -7.4551 0.0097 15 7 2.3947 -8.6224 0.0056 16 6 3.8703 -8.5875 -0.0065 17 6 4.4796 -9.6279 0.9563 18 6 3.6846 -9.6816 2.2377 19 6 2.6019 -10.7497 2.1167 20 1 3.0010 -11.5829 1.5383 21 8 2.2846 -11.2204 3.4281 22 6 1.3627 -10.2863 1.4743 23 6 1.6425 -9.8569 0.0129 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8713 -3.6040 0.8922 28 1 2.8725 -3.6048 -0.8877 29 1 0.8539 -5.0455 -0.8878 30 1 0.8532 -5.0442 0.8922 31 1 3.1010 -6.0919 0.8932 32 1 3.1012 -6.0928 -0.8868 33 1 4.2208 -8.7891 -1.0188 34 1 4.2033 -7.5928 0.2900 35 1 5.5098 -9.3523 1.1815 36 1 4.4635 -10.6080 0.4797 37 1 3.2204 -8.7121 2.4185 38 1 4.3474 -9.9277 3.0672 39 1 1.6548 -11.9540 3.4410 40 1 0.9640 -9.4373 2.0297 41 1 0.6300 -11.0933 1.4792 42 1 0.6971 -9.7090 -0.5092 43 1 2.2167 -10.6348 -0.4904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347747810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = -139.081021 kcal Electronic energy + Delta-G solvation = -20891.508206 eV Core-core repulsion = 17741.462043 eV Total energy + Delta-G solvation = -3150.046164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50278 -39.37993 -37.06319 -36.63468 -34.68125 -33.84900 -33.21504 -31.34163 -28.14954 -27.24620 -25.92148 -24.17048 -22.72422 -21.75216 -21.46462 -19.72241 -18.57556 -18.43518 -17.87304 -17.17842 -16.95325 -16.49464 -16.08096 -15.79545 -15.49599 -14.92630 -14.68924 -14.53311 -14.30334 -13.77478 -13.63662 -13.55371 -13.28486 -13.06123 -12.78534 -12.57043 -12.43991 -12.35707 -12.30611 -12.15423 -12.13596 -11.87754 -11.44486 -11.38256 -11.32630 -11.13454 -10.88884 -10.70013 -10.54592 -9.64548 -8.18629 -6.31217 1.40300 1.44647 1.52482 1.61375 2.04769 2.42165 3.13900 3.26430 3.54803 3.66002 3.88855 3.98818 4.03497 4.10653 4.11180 4.24244 4.32032 4.44406 4.59747 4.60509 4.65322 4.68067 4.77044 4.84268 4.84726 4.96156 5.02297 5.08335 5.16788 5.17487 5.26220 5.32268 5.32877 5.36739 5.55721 5.71531 5.77144 5.87429 6.24814 6.32082 6.86653 6.87103 7.20110 7.38488 8.93564 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034461 B = 0.003033 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.307346 B = 9230.513956 C = 9401.838362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.019 3.981 10 C -0.095 4.095 11 C -0.096 4.096 12 C -0.129 4.129 13 C 0.503 3.497 14 O -0.587 6.587 15 N -0.605 5.605 16 C 0.094 3.906 17 C -0.121 4.121 18 C -0.115 4.115 19 C 0.111 3.889 20 H 0.073 0.927 21 O -0.595 6.595 22 C -0.162 4.162 23 C 0.118 3.882 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.018 1.018 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.391 0.609 40 H 0.036 0.964 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.464 -26.520 0.640 29.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.018 4.018 10 C -0.132 4.132 11 C -0.134 4.134 12 C -0.168 4.168 13 C 0.293 3.707 14 O -0.468 6.468 15 N -0.337 5.337 16 C -0.027 4.027 17 C -0.158 4.158 18 C -0.153 4.153 19 C 0.053 3.947 20 H 0.090 0.910 21 O -0.403 6.403 22 C -0.201 4.201 23 C -0.006 4.006 24 H 0.072 0.928 25 H 0.003 0.997 26 H 0.001 0.999 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.240 0.760 40 H 0.055 0.945 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.133 -25.990 0.799 28.693 hybrid contribution -1.019 0.692 0.025 1.232 sum 11.114 -25.298 0.825 27.644 Atomic orbital electron populations 1.70137 1.08126 1.27837 1.51820 1.26115 0.95788 1.03809 0.94731 0.85419 0.78160 0.77581 0.79394 1.18797 1.21086 1.18880 1.21733 0.93787 0.92191 1.50387 0.91466 1.19050 0.94678 0.93853 0.94216 1.21442 0.97797 0.92625 1.01338 1.21250 0.97501 0.93823 1.00806 1.21727 0.98970 0.89882 1.06209 1.21289 0.87658 0.87047 0.74722 1.90679 1.16441 1.88160 1.51489 1.47881 1.07992 1.05199 1.72653 1.22477 0.76539 1.02175 1.01512 1.21742 1.00181 1.00286 0.93635 1.21062 0.96987 0.97820 0.99403 1.20843 0.93903 0.96657 0.83273 0.90966 1.86555 1.67825 1.56246 1.29705 1.21900 0.99266 1.01819 0.97115 1.21344 0.97167 0.86321 0.95734 0.92843 0.99729 0.99926 0.92167 0.91847 0.93866 0.94310 0.86855 0.86247 0.88990 0.88762 0.87773 0.89603 0.93555 0.90814 0.75984 0.94535 0.89094 0.91783 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.81 13.29 21.45 0.28 -59.53 16 2 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 3 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.54 -31.87 9.11 25.60 0.23 -31.63 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.02 1.07 4.97 29.85 0.15 1.22 16 10 C -0.09 -3.94 5.15 30.60 0.16 -3.78 16 11 C -0.10 -3.59 4.50 30.60 0.14 -3.45 16 12 C -0.13 -3.34 4.02 29.85 0.12 -3.22 16 13 C 0.50 14.33 7.62 87.65 0.67 15.00 16 14 O -0.59 -22.72 15.42 -3.04 -0.05 -22.77 16 15 N -0.60 -11.73 2.23 -817.49 -1.82 -13.55 16 16 C 0.09 1.05 5.99 86.61 0.52 1.57 16 17 C -0.12 -1.01 5.71 30.35 0.17 -0.83 16 18 C -0.11 -1.72 5.15 29.77 0.15 -1.56 16 19 C 0.11 1.62 2.88 28.61 0.08 1.70 16 20 H 0.07 0.69 7.36 -2.39 -0.02 0.68 16 21 O -0.59 -10.19 13.15 -148.98 -1.96 -12.15 16 22 C -0.16 -2.84 5.23 29.39 0.15 -2.68 16 23 C 0.12 2.04 5.38 87.38 0.47 2.51 16 24 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 25 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 26 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 28 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 30 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 31 H 0.11 2.44 7.43 -2.39 -0.02 2.42 16 32 H 0.12 2.42 8.01 -2.39 -0.02 2.40 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 0.99 5.81 -2.39 -0.01 0.98 16 35 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.09 0.46 7.32 -2.39 -0.02 0.44 16 37 H 0.05 0.94 7.49 -2.39 -0.02 0.92 16 38 H 0.07 1.14 8.07 -2.39 -0.02 1.12 16 39 H 0.39 3.42 9.04 -74.06 -0.67 2.75 16 40 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 1.43 7.30 -2.39 -0.02 1.42 16 43 H 0.11 1.11 8.06 -2.39 -0.02 1.10 16 Total: -1.00 -80.32 339.40 2.26 -78.06 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.30 Total: 7.94 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 3.48 Total: -25.14 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -1.54 Total: -73.08 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -2.01 Total: -34.92 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -80.32 2.26 -78.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347747810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.024 kcal (2) G-P(sol) polarization free energy of solvation -80.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds