Wall clock time and date at job start Mon Mar 30 2020 01:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47268 * 2 1 4 4 C 1.46911 * 110.99883 * 199.66871 * 3 2 1 5 5 C 1.50699 * 109.47030 * 66.04408 * 4 3 2 6 6 H 1.08001 * 120.00272 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99495 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99735 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00349 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47185 * 90.00081 * 9 7 5 11 11 H 1.48505 * 109.46972 * 209.99890 * 9 7 5 12 12 H 1.48497 * 109.46860 * 329.99795 * 9 7 5 13 13 C 1.38369 * 111.00310 * 75.71590 * 3 2 1 14 14 N 1.31481 * 126.44368 * 64.43589 * 13 3 2 15 15 N 1.28416 * 110.51179 * 179.97438 * 14 13 3 16 16 N 1.28912 * 110.31902 * 0.02562 * 15 14 13 17 17 N 1.35312 * 126.44071 * 244.13208 * 13 3 2 18 18 C 1.46506 * 127.37879 * 359.97438 * 17 13 3 19 19 H 1.09001 * 109.46768 * 355.29414 * 18 17 13 20 20 C 1.52999 * 109.47001 * 115.29455 * 18 17 13 21 21 C 1.52999 * 109.46917 * 235.29433 * 18 17 13 22 22 O 1.42904 * 109.47198 * 174.99911 * 21 18 17 23 23 C 1.42894 * 113.99981 * 180.02562 * 22 21 18 24 24 H 1.09003 * 109.47060 * 54.84934 * 1 2 3 25 25 H 1.08999 * 109.47393 * 174.85146 * 1 2 3 26 26 H 1.08999 * 109.46763 * 294.85590 * 1 2 3 27 27 H 1.09001 * 109.47353 * 120.00098 * 2 1 3 28 28 H 1.09004 * 109.47385 * 239.99930 * 2 1 3 29 29 H 1.08998 * 109.46518 * 186.04993 * 4 3 2 30 30 H 1.08998 * 109.47034 * 306.04315 * 4 3 2 31 31 H 0.97011 * 120.00125 * 180.02562 * 8 7 5 32 32 H 1.08993 * 109.47253 * 60.00046 * 20 18 17 33 33 H 1.09003 * 109.46478 * 179.97438 * 20 18 17 34 34 H 1.08998 * 109.46713 * 299.99535 * 20 18 17 35 35 H 1.09002 * 109.47447 * 294.99988 * 21 18 17 36 36 H 1.08997 * 109.47310 * 55.00204 * 21 18 17 37 37 H 1.09001 * 109.46881 * 299.99194 * 23 22 21 38 38 H 1.08993 * 109.47474 * 59.99824 * 23 22 21 39 39 H 1.09007 * 109.47025 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4128 1.4508 -0.4616 5 6 3.4811 1.0463 -1.9117 6 1 2.5798 0.7686 -2.4379 7 6 4.6941 1.0318 -2.5668 8 7 4.7537 0.6793 -3.8325 9 14 6.2530 1.5129 -1.6569 10 1 6.8557 0.3065 -1.0354 11 1 7.2189 2.1124 -2.6124 12 1 5.9236 2.5024 -0.5997 13 6 1.8845 1.9588 1.2518 14 7 2.4999 1.5862 2.3524 15 7 2.1491 2.3308 3.3381 16 7 1.2989 3.2180 2.9486 17 7 1.0985 3.0126 1.5723 18 6 0.2243 3.7748 0.6773 19 1 0.3528 3.4198 -0.3452 20 6 -1.2327 3.5847 1.1038 21 6 0.5879 5.2591 0.7514 22 8 -0.1841 5.9871 -0.2057 23 6 0.0807 7.3912 -0.2191 24 1 -0.3633 0.5917 -0.8403 25 1 -0.3634 -1.0235 -0.0922 26 1 -0.3633 0.4320 0.9325 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.7845 2.4694 -0.3505 30 1 4.0252 0.7736 0.1337 31 1 5.6073 0.6688 -4.2934 32 1 -1.3613 3.9396 2.1263 33 1 -1.8831 4.1522 0.4381 34 1 -1.4917 2.5273 1.0509 35 1 0.3753 5.6358 1.7519 36 1 1.6485 5.3846 0.5338 37 1 -0.1423 7.8124 0.7612 38 1 1.1308 7.5606 -0.4571 39 1 -0.5448 7.8718 -0.9714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351026208.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:40 Heat of formation + Delta-G solvation = 63.010038 kcal Electronic energy + Delta-G solvation = -21618.292015 eV Core-core repulsion = 18405.761584 eV Total energy + Delta-G solvation = -3212.530430 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.15977 -39.40264 -39.13324 -36.85625 -34.84670 -32.88188 -32.56159 -31.89043 -29.05508 -28.47376 -26.82135 -25.41973 -24.53930 -24.19124 -22.22469 -21.73691 -19.27090 -18.49186 -17.98307 -17.36843 -17.12496 -16.98247 -16.49858 -16.15095 -15.83046 -15.34540 -14.99932 -14.63075 -14.54460 -14.25951 -14.06117 -13.75811 -13.29863 -13.15194 -13.02091 -12.90612 -12.73385 -12.50493 -12.46922 -12.21866 -12.16251 -12.06956 -11.87332 -11.59856 -11.51482 -11.18428 -10.84967 -10.79951 -9.95764 -8.33713 -6.38196 -0.20452 0.52448 1.06073 1.31300 1.34758 1.41839 2.28363 2.39040 2.67175 2.99435 3.23917 3.47628 3.65179 3.86687 3.98032 4.03996 4.19692 4.27324 4.30279 4.42018 4.44485 4.51782 4.53544 4.61879 4.64173 4.71260 4.80412 4.83549 4.91034 5.00556 5.08853 5.14144 5.26539 5.33117 5.60111 5.92771 5.98862 6.33425 6.67855 7.24379 7.30650 8.80942 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.006630 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.522170 B = 4222.490320 C = 4796.096811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.058 3.942 3 N -0.460 5.460 4 C 0.187 3.813 5 C -0.515 4.515 6 H 0.063 0.937 7 C 0.030 3.970 8 N -0.930 5.930 9 Si 0.926 3.074 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.264 1.264 13 C 0.430 3.570 14 N -0.378 5.378 15 N -0.057 5.057 16 N -0.085 5.085 17 N -0.351 5.351 18 C 0.149 3.851 19 H 0.124 0.876 20 C -0.146 4.146 21 C 0.066 3.934 22 O -0.394 6.394 23 C 0.026 3.974 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.095 0.905 29 H 0.021 0.979 30 H 0.005 0.995 31 H 0.270 0.730 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.729 8.765 8.157 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 N -0.188 5.188 4 C 0.061 3.939 5 C -0.553 4.553 6 H 0.081 0.919 7 C -0.170 4.170 8 N -0.570 5.570 9 Si 0.751 3.249 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.189 1.189 13 C 0.064 3.936 14 N -0.235 5.235 15 N -0.053 5.053 16 N -0.071 5.071 17 N -0.151 5.151 18 C 0.047 3.953 19 H 0.141 0.859 20 C -0.203 4.203 21 C -0.012 4.012 22 O -0.313 6.313 23 C -0.070 4.070 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.039 0.961 30 H 0.023 0.977 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.757 9.046 8.899 17.299 hybrid contribution 1.494 -0.004 -0.236 1.512 sum -10.263 9.042 8.663 16.191 Atomic orbital electron populations 1.21771 0.92713 1.03505 1.01471 1.22314 0.97262 0.84475 1.02763 1.59286 1.24895 1.21630 1.12971 1.20012 0.81879 0.96391 0.95571 1.20943 0.95050 1.45625 0.93703 0.91880 1.25482 1.01615 0.94600 0.95312 1.69969 1.27108 1.48921 1.10978 0.86037 0.80314 0.79592 0.78984 1.19056 1.20164 1.18879 1.23416 0.89001 0.88675 0.92517 1.74918 1.25946 1.25475 0.97144 1.77861 1.06167 1.00219 1.21021 1.82349 1.16823 1.19701 0.88276 1.51793 1.32104 1.23007 1.08175 1.21667 0.90304 0.90511 0.92818 0.85865 1.22087 0.91192 1.03575 1.03472 1.22497 0.94858 0.89963 0.93890 1.87785 1.63572 1.21200 1.58723 1.23012 1.01543 0.79316 1.03150 0.91272 0.89442 0.94061 0.93724 0.88646 0.96082 0.97678 0.92041 0.91026 0.87442 0.91550 0.90652 0.93997 0.92410 0.93943 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.95 71.98 0.72 -2.99 16 2 C 0.06 2.04 5.51 86.30 0.48 2.52 16 3 N -0.46 -18.12 4.21 -711.43 -3.00 -21.11 16 4 C 0.19 8.71 3.68 85.55 0.32 9.03 16 5 C -0.51 -27.33 8.79 25.60 0.22 -27.11 16 6 H 0.06 3.60 7.56 -2.91 -0.02 3.58 16 7 C 0.03 1.64 5.47 84.65 0.46 2.10 16 8 N -0.93 -54.37 13.96 21.45 0.30 -54.07 16 9 Si 0.93 42.76 27.47 68.60 1.88 44.64 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.26 -11.95 6.54 99.48 0.65 -11.30 16 13 C 0.43 16.15 5.86 260.65 1.53 17.68 16 14 N -0.38 -15.18 11.94 -58.70 -0.70 -15.88 16 15 N -0.06 -2.15 13.38 37.02 0.50 -1.65 16 16 N -0.08 -2.84 13.82 37.02 0.51 -2.33 16 17 N -0.35 -11.27 3.33 -329.03 -1.10 -12.37 16 18 C 0.15 3.86 3.48 44.99 0.16 4.01 16 19 H 0.12 3.52 7.85 -2.39 -0.02 3.50 16 20 C -0.15 -2.88 9.41 71.98 0.68 -2.20 16 21 C 0.07 1.56 5.55 71.98 0.40 1.96 16 22 O -0.39 -8.77 10.24 -148.98 -1.53 -10.29 16 23 C 0.03 0.40 11.01 113.37 1.25 1.65 16 24 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.04 1.09 7.77 -2.39 -0.02 1.07 16 27 H 0.04 1.58 7.81 -2.39 -0.02 1.56 16 28 H 0.10 3.70 6.58 -2.38 -0.02 3.68 16 29 H 0.02 1.02 7.11 -2.39 -0.02 1.00 16 30 H 0.01 0.26 7.55 -2.39 -0.02 0.24 16 31 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 1.78 7.82 -2.39 -0.02 1.77 16 34 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -62.48 329.40 4.05 -58.44 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.97 Total: 7.98 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 6.20 Total: 6.65 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -3.49 Total: -107.42 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -1.53 Total: -10.29 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.88 Total: 44.64 kcal Total: -62.48 4.05 -58.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351026208.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.446 kcal (2) G-P(sol) polarization free energy of solvation -62.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds