Wall clock time and date at job start Mon Mar 30 2020 01:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47111 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.46803 * 119.99954 * 3 2 1 6 6 H 1.48497 * 109.46961 * 239.99946 * 3 2 1 7 7 C 1.37878 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99812 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99844 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46793 * 300.00092 * 9 7 2 11 11 O 1.42891 * 109.46999 * 60.00567 * 9 7 2 12 12 C 1.52998 * 109.46777 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.46943 * 180.02562 * 12 9 7 14 14 C 1.47842 * 110.99699 * 291.84737 * 13 12 9 15 15 C 1.54910 * 104.79898 * 213.63738 * 14 13 12 16 16 C 1.55142 * 101.64984 * 37.07361 * 15 14 13 17 17 C 1.47448 * 110.99922 * 171.01209 * 13 12 9 18 18 H 1.09002 * 109.88668 * 242.66170 * 17 13 12 19 19 C 1.52995 * 109.88991 * 3.68566 * 17 13 12 20 20 C 1.53185 * 109.54371 * 197.34767 * 19 17 13 21 21 C 1.53102 * 109.15530 * 183.24124 * 20 19 17 22 22 O 1.42902 * 109.48761 * 57.47183 * 21 20 19 23 23 C 1.42896 * 114.10015 * 298.88637 * 22 21 20 24 24 C 1.53092 * 109.41343 * 61.16016 * 23 22 21 25 25 H 0.97005 * 120.00201 * 179.97438 * 1 2 3 26 26 H 0.96700 * 114.00704 * 60.00022 * 11 9 7 27 27 H 1.09006 * 109.46878 * 299.99854 * 12 9 7 28 28 H 1.08997 * 109.47495 * 59.99442 * 12 9 7 29 29 H 1.09000 * 110.38136 * 332.47158 * 14 13 12 30 30 H 1.09007 * 110.37595 * 94.81150 * 14 13 12 31 31 H 1.09000 * 110.99313 * 278.98045 * 15 14 13 32 32 H 1.08996 * 110.99047 * 155.16197 * 15 14 13 33 33 H 1.09007 * 110.70259 * 205.96406 * 16 15 14 34 34 H 1.08996 * 110.85399 * 82.79779 * 16 15 14 35 35 H 1.09001 * 109.53958 * 317.52214 * 19 17 13 36 36 H 1.08995 * 109.52164 * 303.05650 * 20 19 17 37 37 H 1.08998 * 109.51953 * 63.24166 * 20 19 17 38 38 H 1.09003 * 109.40736 * 297.49189 * 21 20 19 39 39 H 1.09003 * 109.49243 * 177.50937 * 21 20 19 40 40 H 1.08999 * 109.48159 * 301.17748 * 23 22 21 41 41 H 1.09004 * 109.49040 * 181.14924 * 23 22 21 42 42 H 1.09003 * 109.52042 * 182.48716 * 24 23 22 43 43 H 1.08997 * 109.52224 * 62.29760 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8897 11 8 0.4291 -2.5746 -1.1670 12 6 2.2452 -3.6620 -0.0005 13 7 1.5107 -4.9342 -0.0012 14 6 0.8006 -5.1365 1.2797 15 6 0.8394 -6.6670 1.5161 16 6 2.2487 -7.0313 0.9794 17 6 2.4241 -6.0716 -0.2162 18 1 2.1669 -6.5835 -1.1435 19 6 3.8693 -5.5736 -0.2805 20 6 4.7536 -6.6482 -0.9207 21 6 6.2094 -6.1745 -0.9070 22 8 6.6073 -5.8952 0.4368 23 6 5.8458 -4.8641 1.0684 24 6 4.3758 -5.2860 1.1362 25 1 -0.4851 -0.8401 -0.0004 26 1 0.9209 -2.5291 -1.9984 27 1 2.8719 -3.6043 -0.8906 28 1 2.8720 -3.6043 0.8893 29 1 1.3160 -4.6148 2.0860 30 1 -0.2302 -4.7908 1.2009 31 1 0.0610 -7.1706 0.9429 32 1 0.7534 -6.9004 2.5773 33 1 2.2783 -8.0694 0.6479 34 1 3.0114 -6.8478 1.7360 35 1 3.9146 -4.6618 -0.8761 36 1 4.6682 -7.5753 -0.3539 37 1 4.4339 -6.8180 -1.9488 38 1 6.3018 -5.2704 -1.5088 39 1 6.8494 -6.9537 -1.3211 40 1 5.9334 -3.9428 0.4924 41 1 6.2237 -4.6991 2.0775 42 1 3.7862 -4.4824 1.5776 43 1 4.2825 -6.1847 1.7458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354484086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:25 Heat of formation + Delta-G solvation = -108.737340 kcal Electronic energy + Delta-G solvation = -22552.407076 eV Core-core repulsion = 19403.676713 eV Total energy + Delta-G solvation = -3148.730363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.67577 -39.37241 -37.76949 -34.78514 -34.24663 -33.23617 -32.09823 -29.76731 -29.10746 -26.06465 -25.33849 -24.69252 -23.53088 -22.46840 -21.21857 -19.85727 -19.30609 -17.63740 -17.09590 -16.85557 -16.59184 -16.45298 -16.26301 -15.73437 -15.67442 -15.46827 -14.86517 -14.50137 -14.27565 -14.18415 -13.62573 -13.32592 -13.30096 -12.94011 -12.65802 -12.57734 -12.36796 -12.21918 -12.10227 -12.02370 -11.94862 -11.61510 -11.48041 -11.34491 -11.13354 -10.91379 -10.62802 -10.50499 -10.04898 -9.02817 -8.61799 -6.46690 1.50958 1.58629 1.77980 2.54413 2.91484 3.04795 3.17742 3.52655 3.66499 3.74499 3.84120 3.96719 4.03560 4.07801 4.17350 4.24430 4.25600 4.37200 4.45203 4.47403 4.54463 4.61952 4.72701 4.76632 4.81943 4.86303 4.89975 4.97140 4.98216 5.00852 5.10551 5.18747 5.20585 5.37949 5.43442 5.46775 5.83221 6.06199 6.19378 6.21056 6.27753 6.55698 7.24752 7.51903 8.75401 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.006342 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.892471 B = 4413.772467 C = 5429.949951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.018 4.018 3 Si 1.113 2.887 4 H -0.286 1.286 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.658 4.658 8 H 0.051 0.949 9 C 0.219 3.781 10 H 0.010 0.990 11 O -0.584 6.584 12 C 0.045 3.955 13 N -0.529 5.529 14 C 0.043 3.957 15 C -0.119 4.119 16 C -0.140 4.140 17 C 0.077 3.923 18 H 0.081 0.919 19 C -0.112 4.112 20 C -0.138 4.138 21 C 0.056 3.944 22 O -0.397 6.397 23 C 0.062 3.938 24 C -0.161 4.161 25 H 0.266 0.734 26 H 0.358 0.642 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.030 0.970 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.113 0.887 40 H 0.041 0.959 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.883 -15.489 0.920 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.935 3.065 4 H -0.211 1.211 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.696 4.696 8 H 0.069 0.931 9 C 0.161 3.839 10 H 0.027 0.973 11 O -0.389 6.389 12 C -0.082 4.082 13 N -0.253 5.253 14 C -0.085 4.085 15 C -0.157 4.157 16 C -0.178 4.178 17 C -0.030 4.030 18 H 0.099 0.901 19 C -0.131 4.131 20 C -0.176 4.176 21 C -0.021 4.021 22 O -0.316 6.316 23 C -0.015 4.015 24 C -0.197 4.197 25 H 0.077 0.923 26 H 0.203 0.797 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.131 0.869 40 H 0.060 0.940 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.989 -13.997 1.058 17.228 hybrid contribution 0.466 -1.045 0.131 1.152 sum 10.454 -15.042 1.189 18.357 Atomic orbital electron populations 1.70774 1.08099 1.31131 1.45712 1.27286 0.96470 1.06456 0.91746 0.83012 0.74178 0.71373 0.77982 1.21137 1.19502 1.19338 1.22835 0.94597 0.93912 1.58296 0.93118 1.19396 0.88332 0.91933 0.84236 0.97255 1.86414 1.39464 1.96664 1.16319 1.23011 0.95595 0.89290 1.00324 1.63621 1.27183 1.01724 1.32740 1.22972 0.98166 0.97473 0.89903 1.22655 0.97863 0.93143 1.01994 1.23144 0.97079 0.99989 0.97598 1.22525 0.89890 0.91257 0.99369 0.90101 1.21842 0.94926 0.99530 0.96774 1.22150 0.94816 0.98562 1.02077 1.22739 0.95600 1.00759 0.82973 1.87875 1.58594 1.56955 1.28193 1.22581 0.90685 0.89653 0.98582 1.22720 0.96820 1.02555 0.97628 0.92349 0.79652 0.91231 0.93734 0.95174 0.93146 0.90617 0.89411 0.89121 0.89605 0.91379 0.90257 0.89763 0.93628 0.86884 0.94031 0.87881 0.91803 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.04 13.53 21.45 0.29 -57.75 16 2 C -0.02 -1.02 5.40 84.66 0.46 -0.56 16 3 Si 1.11 50.00 29.90 68.60 2.05 52.06 16 4 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 7 C -0.66 -36.84 8.76 25.60 0.22 -36.62 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.22 11.33 2.40 29.85 0.07 11.40 16 10 H 0.01 0.56 7.32 -2.39 -0.02 0.54 16 11 O -0.58 -31.08 11.88 -148.98 -1.77 -32.85 16 12 C 0.05 1.85 3.16 86.30 0.27 2.12 16 13 N -0.53 -18.84 5.04 -860.54 -4.33 -23.17 16 14 C 0.04 1.46 5.73 86.77 0.50 1.95 16 15 C -0.12 -2.89 7.08 31.98 0.23 -2.66 16 16 C -0.14 -3.07 5.97 31.77 0.19 -2.88 16 17 C 0.08 2.09 3.20 45.26 0.14 2.23 16 18 H 0.08 2.16 8.02 -2.39 -0.02 2.14 16 19 C -0.11 -2.82 1.56 -10.67 -0.02 -2.84 16 20 C -0.14 -2.70 5.31 30.69 0.16 -2.54 16 21 C 0.06 1.11 6.84 72.02 0.49 1.60 16 22 O -0.40 -9.67 10.77 -148.98 -1.60 -11.27 16 23 C 0.06 1.49 6.84 72.01 0.49 1.98 16 24 C -0.16 -4.02 4.48 30.68 0.14 -3.88 16 25 H 0.27 17.43 6.47 -92.70 -0.60 16.83 16 26 H 0.36 17.27 9.04 -74.06 -0.67 16.60 16 27 H 0.07 2.81 5.85 -2.38 -0.01 2.80 16 28 H 0.04 1.81 4.49 -2.39 -0.01 1.79 16 29 H 0.03 1.07 7.64 -2.39 -0.02 1.05 16 30 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 33 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.09 1.82 4.67 -2.39 -0.01 1.81 16 35 H 0.07 2.06 5.25 -2.39 -0.01 2.05 16 36 H 0.08 1.42 7.92 -2.39 -0.02 1.41 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 42 H 0.06 1.91 5.15 -2.39 -0.01 1.89 16 43 H 0.09 2.04 5.50 -2.39 -0.01 2.03 16 Total: -1.00 -67.32 317.52 -1.51 -68.82 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.51 Total: 34.85 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 3.35 Total: -30.69 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -4.04 Total: -80.92 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -3.37 Total: -44.12 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.05 Total: 52.06 kcal Total: -67.32 -1.51 -68.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354484086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.915 kcal (2) G-P(sol) polarization free energy of solvation -67.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds