Wall clock time and date at job start Mon Mar 30 2020 01:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99567 * 2 1 4 4 H 1.48508 * 109.46771 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47377 * 299.99999 * 3 2 1 6 6 H 1.48498 * 109.47138 * 60.00091 * 3 2 1 7 7 C 1.37874 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00210 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.46768 * 299.99732 * 9 7 2 11 11 O 1.42895 * 109.46824 * 59.99594 * 9 7 2 12 12 C 1.52999 * 109.47010 * 179.97438 * 9 7 2 13 13 N 1.46904 * 109.46818 * 170.64354 * 12 9 7 14 14 C 1.47846 * 111.00169 * 42.70164 * 13 12 9 15 15 C 1.54904 * 104.79685 * 146.35893 * 14 13 12 16 16 C 1.55544 * 101.67192 * 322.89950 * 15 14 13 17 17 C 1.47438 * 110.99869 * 163.54757 * 13 12 9 18 18 H 1.08996 * 109.89223 * 117.33697 * 17 13 12 19 19 C 1.53004 * 109.88937 * 356.30808 * 17 13 12 20 20 C 1.53175 * 109.54178 * 198.50653 * 19 17 13 21 21 C 1.53112 * 109.15451 * 183.24319 * 20 19 17 22 22 O 1.42908 * 109.48404 * 57.47655 * 21 20 19 23 23 C 1.42901 * 114.09608 * 298.88397 * 22 21 20 24 24 C 1.53099 * 109.41440 * 61.16535 * 23 22 21 25 25 H 0.97002 * 120.00348 * 0.02562 * 1 2 3 26 26 H 0.96698 * 114.00124 * 60.00894 * 11 9 7 27 27 H 1.08997 * 109.47299 * 50.65081 * 12 9 7 28 28 H 1.08996 * 109.47219 * 290.64376 * 12 9 7 29 29 H 1.08995 * 110.37514 * 265.19588 * 14 13 12 30 30 H 1.09004 * 110.37242 * 27.42447 * 14 13 12 31 31 H 1.09000 * 110.98620 * 81.02611 * 15 14 13 32 32 H 1.08997 * 110.99289 * 204.80043 * 15 14 13 33 33 H 1.09002 * 110.76887 * 277.37972 * 16 15 14 34 34 H 1.09001 * 110.82670 * 154.01517 * 16 15 14 35 35 H 1.08994 * 109.54252 * 318.68472 * 19 17 13 36 36 H 1.08997 * 109.52471 * 303.05686 * 20 19 17 37 37 H 1.08994 * 109.52442 * 63.24835 * 20 19 17 38 38 H 1.09001 * 109.40256 * 297.49298 * 21 20 19 39 39 H 1.08997 * 109.48965 * 177.50624 * 21 20 19 40 40 H 1.09000 * 109.48271 * 301.18538 * 23 22 21 41 41 H 1.09002 * 109.48936 * 181.14742 * 23 22 21 42 42 H 1.08999 * 109.51981 * 182.48407 * 24 23 22 43 43 H 1.08997 * 109.52230 * 62.28995 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8904 11 8 0.4300 -2.5751 -1.1665 12 6 2.2454 -3.6620 0.0005 13 7 1.5249 -4.9223 0.2257 14 6 0.2744 -4.9657 -0.5617 15 6 0.0996 -6.4564 -0.9449 16 6 1.5711 -6.8894 -1.2033 17 6 2.3564 -6.0806 -0.1495 18 1 2.5468 -6.6999 0.7270 19 6 3.6815 -5.5993 -0.7442 20 6 4.3295 -6.7369 -1.5392 21 6 5.6915 -6.2721 -2.0621 22 8 6.5093 -5.8630 -0.9640 23 6 5.9752 -4.7701 -0.2141 24 6 4.6258 -5.1752 0.3850 25 1 -0.4851 0.8400 -0.0004 26 1 0.9224 -2.5300 -1.9975 27 1 2.9768 -3.5148 0.7952 28 1 2.7569 -3.7027 -0.9611 29 1 -0.5670 -4.6282 0.0434 30 1 0.3680 -4.3506 -1.4568 31 1 -0.3356 -7.0227 -0.1215 32 1 -0.5020 -6.5595 -1.8479 33 1 1.8834 -6.6151 -2.2109 34 1 1.6947 -7.9598 -1.0383 35 1 3.4983 -4.7514 -1.4042 36 1 4.4657 -7.6027 -0.8912 37 1 3.6882 -7.0062 -2.3784 38 1 5.5506 -5.4328 -2.7431 39 1 6.1770 -7.0921 -2.5912 40 1 5.8381 -3.9111 -0.8709 41 1 6.6650 -4.5080 0.5882 42 1 4.1961 -4.3286 0.9205 43 1 4.7681 -6.0085 1.0730 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354484089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:28 Heat of formation + Delta-G solvation = -97.685814 kcal Electronic energy + Delta-G solvation = -22578.494732 eV Core-core repulsion = 19430.243599 eV Total energy + Delta-G solvation = -3148.251133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49398 -39.42841 -37.44604 -34.81238 -34.24929 -33.32295 -31.73875 -29.60002 -29.29964 -26.28571 -25.27018 -24.66781 -23.05725 -21.71124 -21.50097 -20.14902 -19.00512 -17.44207 -17.02158 -16.89168 -16.67964 -16.29923 -16.26329 -15.87714 -15.50536 -14.95222 -14.73197 -14.48287 -14.04644 -13.96063 -13.44662 -13.36095 -13.15846 -12.94684 -12.84813 -12.73729 -12.42075 -12.20067 -12.09234 -12.00744 -11.98815 -11.63326 -11.32395 -11.18589 -10.93805 -10.90623 -10.71084 -10.40864 -9.88033 -8.86558 -8.13361 -6.39119 1.38022 1.40089 1.51410 2.37623 2.98484 3.11960 3.21904 3.67629 3.71325 3.91787 3.96347 4.06270 4.14771 4.15971 4.25117 4.34292 4.40538 4.55141 4.58239 4.62028 4.72094 4.76373 4.80945 4.84609 4.91152 4.97340 5.03001 5.04189 5.13216 5.17055 5.27630 5.30820 5.41520 5.50388 5.54979 5.64272 5.72158 6.03297 6.27380 6.33163 6.42244 6.74597 7.31771 7.51033 8.90520 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.006612 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.393422 B = 4233.747710 C = 5483.197954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.581 4.581 8 H 0.060 0.940 9 C 0.230 3.770 10 H 0.014 0.986 11 O -0.566 6.566 12 C 0.033 3.967 13 N -0.540 5.540 14 C 0.036 3.964 15 C -0.128 4.128 16 C -0.125 4.125 17 C 0.079 3.921 18 H 0.075 0.925 19 C -0.110 4.110 20 C -0.140 4.140 21 C 0.055 3.945 22 O -0.401 6.401 23 C 0.062 3.938 24 C -0.155 4.155 25 H 0.260 0.740 26 H 0.351 0.649 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.111 0.889 40 H 0.045 0.955 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.614 -14.246 -4.800 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.619 4.619 8 H 0.078 0.922 9 C 0.173 3.827 10 H 0.032 0.968 11 O -0.370 6.370 12 C -0.094 4.094 13 N -0.265 5.265 14 C -0.091 4.091 15 C -0.167 4.167 16 C -0.164 4.164 17 C -0.029 4.029 18 H 0.093 0.907 19 C -0.129 4.129 20 C -0.178 4.178 21 C -0.021 4.021 22 O -0.320 6.320 23 C -0.015 4.015 24 C -0.192 4.192 25 H 0.069 0.931 26 H 0.196 0.804 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.129 0.871 40 H 0.063 0.937 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.037 -14.301 -3.743 16.826 hybrid contribution 0.314 1.577 -0.781 1.787 sum 8.351 -12.725 -4.524 15.878 Atomic orbital electron populations 1.70226 1.07649 1.27185 1.48661 1.25872 0.95419 1.02813 0.93481 0.85557 0.79286 0.79407 0.77615 1.18582 1.20505 1.20747 1.22033 0.93510 0.92590 1.53810 0.92166 1.19216 0.88006 0.90968 0.84517 0.96845 1.86601 1.39447 1.95154 1.15795 1.23192 0.96763 0.89515 0.99951 1.63757 1.05202 1.02252 1.55240 1.23331 0.91502 0.96581 0.97700 1.22817 0.97316 0.95030 1.01497 1.22929 0.93976 1.00614 0.98836 1.22506 0.91480 0.91841 0.97080 0.90709 1.21782 0.94654 0.98929 0.97488 1.22238 0.96735 0.97982 1.00824 1.22755 0.91295 0.99959 0.88124 1.87870 1.47633 1.51964 1.44535 1.22595 0.95080 0.88418 0.95378 1.22494 0.95817 1.02470 0.98430 0.93095 0.80404 0.90918 0.93204 0.94496 0.90760 0.91462 0.90071 0.90601 0.89145 0.90959 0.90753 0.89157 0.93453 0.87078 0.93691 0.88081 0.90814 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.84 12.84 21.45 0.28 -53.56 16 2 C 0.03 1.47 5.40 84.65 0.46 1.93 16 3 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.58 -31.49 8.74 25.60 0.22 -31.27 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 9 C 0.23 11.66 2.51 29.85 0.07 11.74 16 10 H 0.01 0.81 8.14 -2.38 -0.02 0.79 16 11 O -0.57 -28.08 9.20 -148.98 -1.37 -29.45 16 12 C 0.03 1.33 3.70 86.30 0.32 1.65 16 13 N -0.54 -19.50 5.36 -860.55 -4.61 -24.11 16 14 C 0.04 1.30 5.05 86.77 0.44 1.74 16 15 C -0.13 -3.42 7.09 32.12 0.23 -3.19 16 16 C -0.13 -2.84 5.37 31.92 0.17 -2.66 16 17 C 0.08 2.17 3.14 45.26 0.14 2.31 16 18 H 0.07 2.08 8.00 -2.39 -0.02 2.06 16 19 C -0.11 -2.78 1.39 -10.67 -0.01 -2.79 16 20 C -0.14 -2.74 4.80 30.69 0.15 -2.59 16 21 C 0.06 1.10 6.84 72.02 0.49 1.59 16 22 O -0.40 -10.06 10.77 -148.98 -1.60 -11.67 16 23 C 0.06 1.53 6.84 72.02 0.49 2.03 16 24 C -0.15 -4.08 5.06 30.69 0.16 -3.92 16 25 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 26 H 0.35 15.45 8.86 -73.14 -0.65 14.80 16 27 H 0.07 2.96 5.34 -2.39 -0.01 2.95 16 28 H 0.05 1.89 5.02 -2.39 -0.01 1.88 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 2.88 5.08 -2.05 -0.01 2.87 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 1.60 6.55 -2.39 -0.02 1.58 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 2.12 5.24 -2.39 -0.01 2.10 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.50 6.30 -2.39 -0.02 1.48 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.07 2.25 4.90 -2.39 -0.01 2.24 16 43 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 Total: -1.00 -63.73 315.82 -1.60 -65.33 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.36 Total: 31.72 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 3.33 Total: -23.44 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -4.33 Total: -77.67 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -2.97 Total: -41.11 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -63.73 -1.60 -65.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354484089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.359 kcal (2) G-P(sol) polarization free energy of solvation -63.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds