Wall clock time and date at job start Mon Mar 30 2020 01:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00445 * 2 1 4 4 H 1.48508 * 109.46744 * 264.99514 * 3 2 1 5 5 H 1.48495 * 109.46855 * 24.99233 * 3 2 1 6 6 H 1.48498 * 109.47408 * 144.99679 * 3 2 1 7 7 C 1.37886 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99879 * 179.60891 * 7 2 1 9 9 C 1.50703 * 119.99568 * 359.88418 * 7 2 1 10 10 C 1.52995 * 115.55371 * 39.01253 * 9 7 2 11 11 N 1.46907 * 109.46883 * 53.96288 * 10 9 7 12 12 C 1.48562 * 110.99700 * 175.77564 * 11 10 9 13 13 C 1.54383 * 104.59267 * 200.96132 * 12 11 10 14 14 H 1.09006 * 110.32298 * 264.96157 * 13 12 11 15 15 C 1.53001 * 110.32447 * 142.85468 * 13 12 11 16 16 C 1.53001 * 109.46959 * 66.45423 * 15 13 12 17 17 O 1.42898 * 109.46808 * 180.02562 * 16 15 13 18 18 C 1.54258 * 105.05941 * 23.85522 * 13 12 11 19 19 H 1.09005 * 110.32562 * 241.10131 * 18 13 12 20 20 C 1.52995 * 110.32345 * 119.00058 * 18 13 12 21 21 O 1.42902 * 109.47444 * 173.99730 * 20 18 13 22 22 C 1.48556 * 110.99772 * 60.36218 * 11 10 9 23 23 C 1.52999 * 117.49630 * 253.30410 * 9 7 2 24 24 C 1.52999 * 60.00081 * 252.51143 * 23 9 7 25 25 H 0.97000 * 119.99899 * 4.99970 * 1 2 3 26 26 H 1.08999 * 109.47619 * 173.96046 * 10 9 7 27 27 H 1.09002 * 109.47216 * 293.96924 * 10 9 7 28 28 H 1.08990 * 110.41268 * 319.74048 * 12 11 10 29 29 H 1.09006 * 110.40841 * 82.06996 * 12 11 10 30 30 H 1.09001 * 109.47107 * 186.45187 * 15 13 12 31 31 H 1.09000 * 109.46920 * 306.45265 * 15 13 12 32 32 H 1.09001 * 109.47018 * 299.99819 * 16 15 13 33 33 H 1.08997 * 109.46967 * 59.99976 * 16 15 13 34 34 H 0.96700 * 113.99881 * 179.97438 * 17 16 15 35 35 H 1.09003 * 109.47164 * 293.98966 * 20 18 13 36 36 H 1.09000 * 109.47440 * 53.99409 * 20 18 13 37 37 H 0.96695 * 114.00256 * 179.97438 * 21 20 18 38 38 H 1.09006 * 110.40869 * 277.81737 * 22 11 10 39 39 H 1.08996 * 110.41359 * 40.25673 * 22 11 10 40 40 H 1.09002 * 117.50074 * 0.02562 * 23 9 7 41 41 H 1.09005 * 117.50160 * 145.02245 * 23 9 7 42 42 H 1.08998 * 117.49748 * 252.50642 * 24 23 9 43 43 H 1.08997 * 117.51170 * 107.47892 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6025 1.9852 -1.3948 5 1 1.3978 2.6808 0.5915 6 1 3.4899 1.4729 0.8031 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 -0.0058 9 6 1.2508 -2.4992 0.0038 10 6 -0.0095 -2.5356 -0.8629 11 7 0.3270 -2.1283 -2.2336 12 6 -0.8522 -2.2485 -3.1293 13 6 -0.2548 -2.3253 -4.5507 14 1 -0.2378 -1.3361 -5.0082 15 6 -1.0624 -3.2957 -5.4150 16 6 -2.4661 -2.7303 -5.6409 17 8 -3.2206 -3.6369 -6.4476 18 6 1.1827 -2.8491 -4.3536 19 1 1.9053 -2.1170 -4.7143 20 6 1.3677 -4.1810 -5.0833 21 8 2.7378 -4.5798 -5.0069 22 6 1.3329 -3.0447 -2.8296 23 6 1.2375 -3.3040 1.3049 24 6 2.0691 -3.7872 0.1150 25 1 -0.4850 0.8369 -0.0732 26 1 -0.4140 -3.5477 -0.8736 27 1 -0.7524 -1.8516 -0.4526 28 1 -1.4110 -3.1564 -2.9022 29 1 -1.4945 -1.3732 -3.0317 30 1 -0.5647 -3.4272 -6.3758 31 1 -1.1356 -4.2584 -4.9089 32 1 -2.9638 -2.5988 -4.6802 33 1 -2.3928 -1.7677 -6.1470 34 1 -4.1230 -3.3423 -6.6314 35 1 0.7416 -4.9413 -4.6163 36 1 1.0806 -4.0657 -6.1285 37 1 2.9287 -5.4182 -5.4492 38 1 2.3369 -2.7680 -2.5079 39 1 1.1160 -4.0772 -2.5557 40 1 1.7735 -2.8894 2.1587 41 1 0.3306 -3.8596 1.5439 42 1 1.7094 -4.6606 -0.4288 43 1 3.1525 -3.6905 0.1856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473893848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:06 Heat of formation + Delta-G solvation = -68.110388 kcal Electronic energy + Delta-G solvation = -22129.580985 eV Core-core repulsion = 18982.612339 eV Total energy + Delta-G solvation = -3146.968646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.38506 -37.06458 -36.69469 -35.72992 -32.82753 -31.93605 -30.34456 -27.36478 -25.81613 -25.30347 -23.66986 -22.43879 -21.10197 -20.45885 -18.95204 -18.61636 -17.42000 -17.14993 -16.00487 -15.80188 -15.09262 -14.70341 -14.45578 -14.35626 -13.83056 -13.57893 -13.35161 -13.13334 -12.49300 -12.34181 -11.94447 -11.66856 -11.56764 -11.16613 -11.05735 -10.91612 -10.81497 -10.55252 -10.42367 -10.37796 -10.32271 -10.04499 -10.01541 -9.86796 -9.56758 -9.23655 -8.80688 -8.54178 -7.97827 -7.23891 -5.79668 -3.86677 3.40222 3.45331 3.48762 4.10910 4.33695 4.53600 4.80920 4.90837 5.02006 5.15760 5.19861 5.33501 5.38310 5.50281 5.54109 5.68108 5.70166 5.75582 5.86985 5.91771 6.02161 6.10526 6.19731 6.31083 6.35655 6.42895 6.56184 6.63370 6.70150 6.76820 6.83580 6.91422 7.01075 7.23187 7.39562 7.51356 7.68226 7.75560 8.00979 8.14920 8.29713 8.62451 9.07711 9.74211 11.19783 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.006165 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.929293 B = 4540.399310 C = 5005.465107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.086 3.914 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.473 4.473 8 H 0.053 0.947 9 C 0.064 3.936 10 C 0.095 3.905 11 N -0.463 5.463 12 C 0.037 3.963 13 C -0.082 4.082 14 H 0.081 0.919 15 C -0.116 4.116 16 C 0.073 3.927 17 O -0.579 6.579 18 C -0.089 4.089 19 H 0.084 0.916 20 C 0.082 3.918 21 O -0.570 6.570 22 C 0.055 3.945 23 C -0.207 4.207 24 C -0.214 4.214 25 H 0.256 0.744 26 H -0.018 1.018 27 H 0.119 0.881 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.377 0.623 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.372 0.628 38 H 0.086 0.914 39 H 0.026 0.974 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 -6.416 -11.399 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.117 4.117 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.510 4.510 8 H 0.071 0.929 9 C 0.063 3.937 10 C -0.032 4.032 11 N -0.186 5.186 12 C -0.091 4.091 13 C -0.101 4.101 14 H 0.099 0.901 15 C -0.153 4.153 16 C -0.004 4.004 17 O -0.385 6.385 18 C -0.108 4.108 19 H 0.102 0.898 20 C 0.005 3.995 21 O -0.375 6.375 22 C -0.073 4.073 23 C -0.246 4.246 24 C -0.252 4.252 25 H 0.066 0.934 26 H 0.000 1.000 27 H 0.137 0.863 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.223 0.777 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.218 0.782 38 H 0.104 0.896 39 H 0.044 0.956 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.706 -5.479 -10.902 12.752 hybrid contribution -0.433 -0.268 -0.313 0.598 sum -4.138 -5.748 -11.216 13.265 Atomic orbital electron populations 1.69757 1.05844 1.25938 1.49678 1.24749 0.94629 0.98405 0.93929 0.86662 0.79677 0.83745 0.78111 1.20642 1.21568 1.20319 1.20273 0.91797 0.88593 1.50320 0.92868 1.18945 0.93209 0.89496 0.92040 1.21953 0.99113 0.94777 0.87377 1.65343 1.05162 1.46772 1.01273 1.23153 0.94850 0.99720 0.91405 1.21827 0.93626 0.98657 0.95968 0.90080 1.21739 0.93617 0.99599 1.00365 1.22277 0.92550 0.91726 0.93850 1.86451 1.29055 1.49476 1.73478 1.21916 0.96368 0.95421 0.97126 0.89800 1.22487 0.82254 0.96287 0.98499 1.86553 1.27158 1.43445 1.80296 1.23000 0.99389 0.94186 0.90709 1.22971 1.00289 1.07273 0.94062 1.22914 0.97462 1.00401 1.04407 0.93367 0.99973 0.86344 0.95324 0.90683 0.91136 0.91244 0.93176 0.93618 0.77684 0.93888 0.93653 0.78207 0.89610 0.95566 0.90490 0.92079 0.92000 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.94 10.56 55.43 0.59 -23.36 16 2 C 0.09 2.33 5.36 -17.82 -0.10 2.23 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.47 -12.94 8.70 -34.44 -0.30 -13.24 16 8 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.06 1.59 1.37 -155.66 -0.21 1.38 16 10 C 0.10 2.25 3.96 -3.82 -0.02 2.24 16 11 N -0.46 -10.06 5.11 -229.97 -1.17 -11.23 16 12 C 0.04 0.66 5.16 -2.18 -0.01 0.65 16 13 C -0.08 -1.21 3.09 -89.24 -0.28 -1.49 16 14 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.12 -1.45 3.78 -26.73 -0.10 -1.55 16 16 C 0.07 0.84 6.89 37.16 0.26 1.09 16 17 O -0.58 -6.49 13.66 -35.23 -0.48 -6.97 16 18 C -0.09 -1.46 3.32 -89.24 -0.30 -1.75 16 19 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 20 C 0.08 1.12 5.20 37.16 0.19 1.31 16 21 O -0.57 -8.00 13.57 -35.23 -0.48 -8.47 16 22 C 0.06 1.10 4.54 -2.19 -0.01 1.09 16 23 C -0.21 -4.83 9.95 -26.73 -0.27 -5.10 16 24 C -0.21 -4.83 8.89 -26.73 -0.24 -5.07 16 25 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 26 H -0.02 -0.40 7.92 -51.93 -0.41 -0.81 16 27 H 0.12 3.09 5.96 -51.93 -0.31 2.78 16 28 H 0.03 0.50 7.57 -51.93 -0.39 0.11 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.07 0.83 6.52 -51.93 -0.34 0.50 16 31 H 0.07 0.92 7.02 -51.93 -0.36 0.56 16 32 H 0.05 0.57 7.48 -51.93 -0.39 0.19 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.38 2.46 9.12 45.56 0.42 2.87 16 35 H 0.04 0.58 7.03 -51.93 -0.37 0.21 16 36 H 0.05 0.53 6.37 -51.93 -0.33 0.20 16 37 H 0.37 3.30 9.12 45.56 0.42 3.71 16 38 H 0.09 1.94 7.84 -51.93 -0.41 1.54 16 39 H 0.03 0.53 7.10 -51.93 -0.37 0.16 16 40 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.06 1.31 7.73 -51.93 -0.40 0.91 16 43 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 333.84 15.07 5.03 5.03 Total: -1.00 -30.62 333.84 -8.66 -39.28 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.75 Total: 7.46 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.37 Total: -18.19 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: -0.59 Total: -34.59 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.96 Total: -15.45 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.62 -8.66 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473893848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.833 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds