Wall clock time and date at job start Mon Mar 30 2020 01:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00445 * 2 1 4 4 H 1.48508 * 109.46744 * 264.99514 * 3 2 1 5 5 H 1.48495 * 109.46855 * 24.99233 * 3 2 1 6 6 H 1.48498 * 109.47408 * 144.99679 * 3 2 1 7 7 C 1.37886 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99879 * 179.60891 * 7 2 1 9 9 C 1.50703 * 119.99568 * 359.88418 * 7 2 1 10 10 C 1.52995 * 115.55371 * 39.01253 * 9 7 2 11 11 N 1.46907 * 109.46883 * 53.96288 * 10 9 7 12 12 C 1.48562 * 110.99700 * 175.77564 * 11 10 9 13 13 C 1.54383 * 104.59267 * 200.96132 * 12 11 10 14 14 H 1.09006 * 110.32298 * 264.96157 * 13 12 11 15 15 C 1.53001 * 110.32447 * 142.85468 * 13 12 11 16 16 C 1.53001 * 109.46959 * 66.45423 * 15 13 12 17 17 O 1.42898 * 109.46808 * 180.02562 * 16 15 13 18 18 C 1.54258 * 105.05941 * 23.85522 * 13 12 11 19 19 H 1.09005 * 110.32562 * 241.10131 * 18 13 12 20 20 C 1.52995 * 110.32345 * 119.00058 * 18 13 12 21 21 O 1.42902 * 109.47444 * 173.99730 * 20 18 13 22 22 C 1.48556 * 110.99772 * 60.36218 * 11 10 9 23 23 C 1.52999 * 117.49630 * 253.30410 * 9 7 2 24 24 C 1.52999 * 60.00081 * 252.51143 * 23 9 7 25 25 H 0.97000 * 119.99899 * 4.99970 * 1 2 3 26 26 H 1.08999 * 109.47619 * 173.96046 * 10 9 7 27 27 H 1.09002 * 109.47216 * 293.96924 * 10 9 7 28 28 H 1.08990 * 110.41268 * 319.74048 * 12 11 10 29 29 H 1.09006 * 110.40841 * 82.06996 * 12 11 10 30 30 H 1.09001 * 109.47107 * 186.45187 * 15 13 12 31 31 H 1.09000 * 109.46920 * 306.45265 * 15 13 12 32 32 H 1.09001 * 109.47018 * 299.99819 * 16 15 13 33 33 H 1.08997 * 109.46967 * 59.99976 * 16 15 13 34 34 H 0.96700 * 113.99881 * 179.97438 * 17 16 15 35 35 H 1.09003 * 109.47164 * 293.98966 * 20 18 13 36 36 H 1.09000 * 109.47440 * 53.99409 * 20 18 13 37 37 H 0.96695 * 114.00256 * 179.97438 * 21 20 18 38 38 H 1.09006 * 110.40869 * 277.81737 * 22 11 10 39 39 H 1.08996 * 110.41359 * 40.25673 * 22 11 10 40 40 H 1.09002 * 117.50074 * 0.02562 * 23 9 7 41 41 H 1.09005 * 117.50160 * 145.02245 * 23 9 7 42 42 H 1.08998 * 117.49748 * 252.50642 * 24 23 9 43 43 H 1.08997 * 117.51170 * 107.47892 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6025 1.9852 -1.3948 5 1 1.3978 2.6808 0.5915 6 1 3.4899 1.4729 0.8031 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 -0.0058 9 6 1.2508 -2.4992 0.0038 10 6 -0.0095 -2.5356 -0.8629 11 7 0.3270 -2.1283 -2.2336 12 6 -0.8522 -2.2485 -3.1293 13 6 -0.2548 -2.3253 -4.5507 14 1 -0.2378 -1.3361 -5.0082 15 6 -1.0624 -3.2957 -5.4150 16 6 -2.4661 -2.7303 -5.6409 17 8 -3.2206 -3.6369 -6.4476 18 6 1.1827 -2.8491 -4.3536 19 1 1.9053 -2.1170 -4.7143 20 6 1.3677 -4.1810 -5.0833 21 8 2.7378 -4.5798 -5.0069 22 6 1.3329 -3.0447 -2.8296 23 6 1.2375 -3.3040 1.3049 24 6 2.0691 -3.7872 0.1150 25 1 -0.4850 0.8369 -0.0732 26 1 -0.4140 -3.5477 -0.8736 27 1 -0.7524 -1.8516 -0.4526 28 1 -1.4110 -3.1564 -2.9022 29 1 -1.4945 -1.3732 -3.0317 30 1 -0.5647 -3.4272 -6.3758 31 1 -1.1356 -4.2584 -4.9089 32 1 -2.9638 -2.5988 -4.6802 33 1 -2.3928 -1.7677 -6.1470 34 1 -4.1230 -3.3423 -6.6314 35 1 0.7416 -4.9413 -4.6163 36 1 1.0806 -4.0657 -6.1285 37 1 2.9287 -5.4182 -5.4492 38 1 2.3369 -2.7680 -2.5079 39 1 1.1160 -4.0772 -2.5557 40 1 1.7735 -2.8894 2.1587 41 1 0.3306 -3.8596 1.5439 42 1 1.7094 -4.6606 -0.4288 43 1 3.1525 -3.6905 0.1856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473893848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:06 Heat of formation + Delta-G solvation = -92.387469 kcal Electronic energy + Delta-G solvation = -22130.633719 eV Core-core repulsion = 18982.612339 eV Total energy + Delta-G solvation = -3148.021379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76156 -38.55585 -37.71564 -37.02478 -34.20625 -33.98476 -31.59439 -28.75775 -27.46769 -27.11357 -25.00269 -23.61827 -22.93207 -21.95766 -20.79514 -19.90856 -18.47433 -18.15507 -17.85527 -17.01456 -16.59655 -16.18905 -15.94581 -15.80633 -15.29948 -15.01059 -14.77590 -14.46473 -14.05504 -13.76916 -13.41203 -13.10780 -12.93553 -12.82546 -12.72060 -12.60864 -12.35590 -12.26658 -12.16018 -11.83078 -11.74661 -11.55072 -11.24873 -11.13778 -10.93528 -10.80831 -10.60692 -10.48004 -9.95746 -8.90078 -7.85318 -5.98825 1.45598 1.47647 1.54305 2.52166 3.09733 3.23715 3.28330 3.54136 3.67823 3.73746 3.90595 4.13522 4.17300 4.27242 4.36258 4.40964 4.47328 4.51659 4.56959 4.61684 4.65525 4.73787 4.74743 4.85308 4.85737 4.91806 4.96189 5.02307 5.12745 5.21357 5.24662 5.29954 5.37905 5.46702 5.53195 5.68840 6.08401 6.35288 6.50164 6.67486 6.91039 6.97677 7.00049 7.63033 9.11019 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.006165 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.929293 B = 4540.399310 C = 5005.465107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.049 3.951 3 Si 0.941 3.059 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.490 4.490 8 H 0.036 0.964 9 C 0.035 3.965 10 C 0.109 3.891 11 N -0.490 5.490 12 C 0.039 3.961 13 C -0.068 4.068 14 H 0.086 0.914 15 C -0.108 4.108 16 C 0.075 3.925 17 O -0.593 6.593 18 C -0.088 4.088 19 H 0.071 0.929 20 C 0.090 3.910 21 O -0.593 6.593 22 C 0.064 3.936 23 C -0.206 4.206 24 C -0.194 4.194 25 H 0.256 0.744 26 H -0.013 1.013 27 H 0.092 0.908 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.397 0.603 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.395 0.605 38 H 0.050 0.950 39 H 0.024 0.976 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -7.024 -13.070 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.152 4.152 3 Si 0.768 3.232 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.035 3.965 10 C -0.019 4.019 11 N -0.212 5.212 12 C -0.089 4.089 13 C -0.087 4.087 14 H 0.104 0.896 15 C -0.145 4.145 16 C -0.002 4.002 17 O -0.402 6.402 18 C -0.107 4.107 19 H 0.090 0.910 20 C 0.012 3.988 21 O -0.401 6.401 22 C -0.064 4.064 23 C -0.244 4.244 24 C -0.232 4.232 25 H 0.065 0.935 26 H 0.004 0.996 27 H 0.110 0.890 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.246 0.754 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.244 0.756 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.254 -6.104 -12.585 14.620 hybrid contribution -0.254 -0.102 0.223 0.353 sum -4.508 -6.206 -12.362 14.548 Atomic orbital electron populations 1.69884 1.06451 1.26314 1.49849 1.25287 0.95397 1.00676 0.93857 0.85860 0.78658 0.80841 0.77826 1.20735 1.20956 1.20365 1.20397 0.91191 0.90245 1.50948 0.94561 1.19069 0.94382 0.89569 0.93501 1.21637 0.97688 0.94141 0.88430 1.65200 1.07224 1.47710 1.01100 1.23165 0.93672 0.99611 0.92437 1.21706 0.92781 0.99714 0.94538 0.89556 1.21631 0.94191 0.98467 1.00252 1.22193 0.91884 0.92165 0.93990 1.86390 1.30657 1.49818 1.73288 1.21881 0.97024 0.97144 0.94679 0.91031 1.22396 0.82309 0.94562 0.99511 1.86497 1.27348 1.45248 1.81043 1.22811 0.97001 0.93398 0.93211 1.22973 1.00961 1.06936 0.93550 1.22838 0.97083 0.99692 1.03560 0.93452 0.99551 0.88985 0.94818 0.91354 0.89680 0.91726 0.93645 0.92384 0.75371 0.93417 0.90967 0.75586 0.93164 0.95787 0.91145 0.90641 0.90459 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.13 10.56 21.45 0.23 -48.91 16 2 C 0.05 2.69 5.36 84.66 0.45 3.15 16 3 Si 0.94 44.50 29.54 68.60 2.03 46.53 16 4 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.49 -27.38 8.70 25.60 0.22 -27.16 16 8 H 0.04 2.08 7.81 -2.91 -0.02 2.06 16 9 C 0.04 1.79 1.37 -52.93 -0.07 1.71 16 10 C 0.11 5.22 3.96 86.30 0.34 5.56 16 11 N -0.49 -21.44 5.11 -881.49 -4.50 -25.94 16 12 C 0.04 1.37 5.16 86.45 0.45 1.82 16 13 C -0.07 -1.91 3.09 -9.90 -0.03 -1.94 16 14 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 15 C -0.11 -2.40 3.78 30.60 0.12 -2.29 16 16 C 0.08 1.51 6.89 71.98 0.50 2.01 16 17 O -0.59 -11.56 13.66 -148.98 -2.03 -13.60 16 18 C -0.09 -2.78 3.32 -9.90 -0.03 -2.81 16 19 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 20 C 0.09 2.22 5.20 71.98 0.37 2.59 16 21 O -0.59 -15.48 13.57 -148.98 -2.02 -17.50 16 22 C 0.06 2.56 4.54 86.45 0.39 2.95 16 23 C -0.21 -9.55 9.95 30.59 0.30 -9.25 16 24 C -0.19 -8.71 8.89 30.59 0.27 -8.44 16 25 H 0.26 13.65 8.32 -92.71 -0.77 12.88 16 26 H -0.01 -0.61 7.92 -2.39 -0.02 -0.63 16 27 H 0.09 4.90 5.96 -2.39 -0.01 4.88 16 28 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 29 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.08 1.68 6.52 -2.39 -0.02 1.67 16 31 H 0.06 1.53 7.02 -2.39 -0.02 1.51 16 32 H 0.05 0.95 7.48 -2.39 -0.02 0.93 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.40 4.06 9.12 -74.06 -0.68 3.39 16 35 H 0.05 1.15 7.03 -2.39 -0.02 1.13 16 36 H 0.07 1.43 6.37 -2.39 -0.02 1.41 16 37 H 0.39 6.01 9.12 -74.06 -0.68 5.34 16 38 H 0.05 2.33 7.84 -2.38 -0.02 2.32 16 39 H 0.02 0.95 7.10 -2.39 -0.02 0.94 16 40 H 0.07 3.31 8.14 -2.39 -0.02 3.30 16 41 H 0.08 3.24 8.14 -2.38 -0.02 3.23 16 42 H 0.08 3.19 7.73 -2.39 -0.02 3.18 16 43 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -65.45 333.84 -3.37 -68.82 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.35 Total: 22.68 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: 3.28 Total: -32.09 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -4.27 Total: -74.84 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -4.06 Total: -31.10 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -65.45 -3.37 -68.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473893848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.564 kcal (2) G-P(sol) polarization free energy of solvation -65.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds