Wall clock time and date at job start Mon Mar 30 2020 01:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00433 * 2 1 4 4 H 1.48498 * 109.47189 * 274.94117 * 3 2 1 5 5 H 1.48501 * 109.46871 * 154.93842 * 3 2 1 6 6 H 1.48505 * 109.46957 * 34.94099 * 3 2 1 7 7 C 1.37883 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99650 * 354.44763 * 7 2 1 9 9 C 1.50697 * 119.99871 * 174.43999 * 7 2 1 10 10 C 1.52996 * 115.55484 * 296.25358 * 9 7 2 11 11 N 1.46905 * 109.46787 * 300.64203 * 10 9 7 12 12 C 1.48552 * 111.00258 * 280.07039 * 11 10 9 13 13 C 1.54380 * 104.59558 * 200.96195 * 12 11 10 14 14 H 1.08996 * 110.32244 * 264.95443 * 13 12 11 15 15 C 1.53006 * 110.40694 * 142.79135 * 13 12 11 16 16 O 1.42897 * 109.46905 * 69.31546 * 15 13 12 17 17 C 1.54258 * 105.06082 * 23.85246 * 13 12 11 18 18 H 1.08994 * 110.32729 * 241.10323 * 17 13 12 19 19 C 1.53004 * 110.32484 * 118.89365 * 17 13 12 20 20 C 1.52993 * 109.47117 * 177.90913 * 19 17 13 21 21 O 1.42902 * 109.47143 * 180.02562 * 20 19 17 22 22 C 1.48561 * 110.99602 * 164.65223 * 11 10 9 23 23 C 1.53007 * 117.49534 * 150.58181 * 9 7 2 24 24 C 1.52998 * 117.49407 * 81.92596 * 9 7 2 25 25 H 0.96998 * 119.99486 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.46939 * 60.64293 * 10 9 7 27 27 H 1.08997 * 109.47529 * 180.64403 * 10 9 7 28 28 H 1.08999 * 110.40998 * 319.74160 * 12 11 10 29 29 H 1.09000 * 110.41367 * 82.18400 * 12 11 10 30 30 H 1.09007 * 109.46381 * 189.31038 * 15 13 12 31 31 H 1.08992 * 109.47130 * 309.31158 * 15 13 12 32 32 H 0.96707 * 114.00044 * 179.97438 * 16 15 13 33 33 H 1.09002 * 109.47533 * 297.91404 * 19 17 13 34 34 H 1.09006 * 109.46823 * 57.91256 * 19 17 13 35 35 H 1.09006 * 109.47457 * 300.00134 * 20 19 17 36 36 H 1.08995 * 109.47258 * 60.00035 * 20 19 17 37 37 H 0.96705 * 114.00109 * 180.02562 * 21 20 19 38 38 H 1.09006 * 110.41147 * 277.82031 * 22 11 10 39 39 H 1.08994 * 110.41638 * 40.26307 * 22 11 10 40 40 H 1.09001 * 117.49721 * 359.97438 * 23 9 7 41 41 H 1.08998 * 117.50008 * 145.02331 * 23 9 7 42 42 H 1.09005 * 117.49603 * 214.97316 * 24 9 7 43 43 H 1.09006 * 117.50214 * 359.97147 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.3924 2.1066 -1.3948 5 1 3.5951 1.4120 0.5931 6 1 1.5029 2.6202 0.8019 7 6 2.0045 -1.1941 0.0005 8 1 1.4683 -2.1271 0.0914 9 6 3.5062 -1.1973 -0.1259 10 6 4.0588 -0.6494 -1.4432 11 7 3.5357 -1.4447 -2.5621 12 6 4.2928 -2.7139 -2.7129 13 6 4.0271 -3.1548 -4.1684 14 1 3.1964 -3.8595 -4.2047 15 6 5.2838 -3.7842 -4.7730 16 8 5.5380 -5.0408 -4.1419 17 6 3.6628 -1.8578 -4.9199 18 1 2.6533 -1.9259 -5.3252 19 6 4.6699 -1.5924 -6.0408 20 6 4.2613 -0.3318 -6.8055 21 8 5.2015 -0.0842 -7.8527 22 6 3.7391 -0.7424 -3.8553 23 6 4.2684 -2.3470 0.5361 24 6 4.3224 -0.9427 1.1429 25 1 -0.4849 0.8401 -0.0004 26 1 3.7521 0.3898 -1.5615 27 1 5.1471 -0.7082 -1.4332 28 1 5.3577 -2.5421 -2.5562 29 1 3.9210 -3.4637 -2.0147 30 1 5.1347 -3.9381 -5.8419 31 1 6.1339 -3.1204 -4.6165 32 1 6.3218 -5.4978 -4.4766 33 1 5.6621 -1.4517 -5.6120 34 1 4.6862 -2.4421 -6.7233 35 1 3.2690 -0.4725 -7.2343 36 1 4.2449 0.5179 -6.1230 37 1 5.0048 0.7021 -8.3802 38 1 2.9503 -0.0078 -4.0172 39 1 4.7173 -0.2622 -3.8774 40 1 3.6837 -3.1008 1.0634 41 1 5.1637 -2.7128 0.0334 42 1 5.2533 -0.3852 1.0390 43 1 3.7732 -0.7725 2.0690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473893850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:08 Heat of formation + Delta-G solvation = -68.371824 kcal Electronic energy + Delta-G solvation = -21947.851222 eV Core-core repulsion = 18800.871239 eV Total energy + Delta-G solvation = -3146.979983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.64857 -37.26776 -36.87450 -35.97777 -33.16926 -31.94696 -30.59674 -27.73426 -26.44104 -25.26757 -23.85541 -22.64444 -21.40596 -20.80748 -19.05636 -18.75696 -17.56393 -17.27524 -16.19758 -16.04450 -15.28754 -15.01616 -14.70892 -14.52624 -14.03055 -13.77780 -13.49729 -13.17788 -12.80517 -12.60114 -12.25423 -12.14123 -11.83291 -11.56159 -11.39371 -11.26310 -10.86976 -10.75250 -10.59894 -10.47360 -10.25892 -10.25167 -10.14175 -10.03362 -9.73316 -9.36431 -8.92989 -8.51580 -8.29092 -7.67878 -5.94790 -3.90337 3.31547 3.43162 3.49315 3.98661 4.14872 4.49610 4.53655 4.66850 4.84272 4.98040 5.03717 5.15135 5.21009 5.32353 5.36504 5.40842 5.49842 5.53652 5.66449 5.72557 5.79299 5.85339 5.94525 5.96047 6.07484 6.13339 6.19158 6.25394 6.39353 6.45908 6.47300 6.57559 6.66964 6.81571 7.13831 7.21713 7.42437 7.48060 7.61121 7.77577 7.94579 8.68580 9.09556 9.69866 11.18303 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.006358 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.327327 B = 4403.076079 C = 5354.813407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.078 3.922 3 Si 0.866 3.134 4 H -0.284 1.284 5 H -0.253 1.253 6 H -0.295 1.295 7 C -0.452 4.452 8 H 0.074 0.926 9 C 0.012 3.988 10 C 0.084 3.916 11 N -0.476 5.476 12 C 0.052 3.948 13 C -0.087 4.087 14 H 0.089 0.911 15 C 0.082 3.918 16 O -0.571 6.571 17 C -0.081 4.081 18 H 0.087 0.913 19 C -0.116 4.116 20 C 0.072 3.928 21 O -0.579 6.579 22 C 0.031 3.969 23 C -0.184 4.184 24 C -0.199 4.199 25 H 0.260 0.740 26 H 0.061 0.939 27 H 0.014 0.986 28 H 0.032 0.968 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.374 0.626 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.378 0.622 38 H 0.079 0.921 39 H 0.035 0.965 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.566 -2.421 -13.187 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.122 4.122 3 Si 0.695 3.305 4 H -0.211 1.211 5 H -0.177 1.177 6 H -0.222 1.222 7 C -0.489 4.489 8 H 0.092 0.908 9 C 0.011 3.989 10 C -0.044 4.044 11 N -0.199 5.199 12 C -0.076 4.076 13 C -0.106 4.106 14 H 0.107 0.893 15 C 0.004 3.996 16 O -0.376 6.376 17 C -0.100 4.100 18 H 0.105 0.895 19 C -0.154 4.154 20 C -0.005 4.005 21 O -0.384 6.384 22 C -0.097 4.097 23 C -0.221 4.221 24 C -0.237 4.237 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.032 0.968 28 H 0.050 0.950 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.220 0.780 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.224 0.776 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.549 -2.758 -12.465 16.561 hybrid contribution 1.494 1.636 -0.668 2.314 sum 12.043 -1.121 -13.133 17.854 Atomic orbital electron populations 1.69909 1.06231 1.26517 1.51434 1.24831 0.94378 0.98540 0.94491 0.87054 0.81497 0.84266 0.77692 1.21071 1.17711 1.22228 1.20124 0.86479 0.94226 1.48104 0.90773 1.19330 0.94756 0.97284 0.87542 1.21979 0.93746 0.96611 0.92050 1.65302 1.50931 1.02995 1.00633 1.23083 0.95317 0.93899 0.95278 1.21888 0.97156 0.96120 0.95446 0.89299 1.22479 0.97103 0.84669 0.95361 1.86539 1.50551 1.34561 1.65904 1.21819 0.99427 0.94503 0.94276 0.89489 1.21744 0.99703 0.97095 0.96850 1.22275 0.91443 0.97911 0.88883 1.86445 1.53414 1.50621 1.47950 1.23254 0.99644 0.96347 0.90443 1.22774 1.01573 0.91814 1.05926 1.23083 1.01380 0.98811 1.00415 0.92972 0.92086 0.96780 0.94965 0.89487 0.93348 0.93787 0.77969 0.91184 0.90845 0.93427 0.93288 0.77554 0.90282 0.94695 0.89869 0.91435 0.91758 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.87 21.69 24.84 -169.99 -4.22 17.46 16 4 H -0.28 -6.97 7.07 56.52 0.40 -6.57 16 5 H -0.25 -5.98 5.81 56.52 0.33 -5.65 16 6 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 7 C -0.45 -12.74 9.19 -34.44 -0.32 -13.06 16 8 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.01 0.29 0.89 -155.66 -0.14 0.15 16 10 C 0.08 1.81 4.35 -3.82 -0.02 1.79 16 11 N -0.48 -9.55 5.10 -229.98 -1.17 -10.72 16 12 C 0.05 0.92 5.24 -2.19 -0.01 0.90 16 13 C -0.09 -1.26 3.32 -89.24 -0.30 -1.55 16 14 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 15 C 0.08 0.96 5.19 37.16 0.19 1.15 16 16 O -0.57 -6.99 13.55 -35.23 -0.48 -7.47 16 17 C -0.08 -1.09 3.09 -89.24 -0.28 -1.37 16 18 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 19 C -0.12 -1.31 3.78 -26.73 -0.10 -1.41 16 20 C 0.07 0.76 6.89 37.15 0.26 1.02 16 21 O -0.58 -6.05 13.66 -35.23 -0.48 -6.53 16 22 C 0.03 0.52 5.08 -2.18 -0.01 0.50 16 23 C -0.18 -3.85 9.15 -26.69 -0.24 -4.10 16 24 C -0.20 -4.31 8.23 -26.69 -0.22 -4.53 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.06 1.38 4.74 -51.93 -0.25 1.13 16 27 H 0.01 0.28 7.61 -51.93 -0.40 -0.12 16 28 H 0.03 0.55 7.29 -51.93 -0.38 0.17 16 29 H 0.09 1.69 7.80 -51.93 -0.40 1.29 16 30 H 0.05 0.49 6.43 -51.93 -0.33 0.16 16 31 H 0.04 0.50 6.99 -51.93 -0.36 0.14 16 32 H 0.37 2.72 9.12 45.56 0.42 3.13 16 33 H 0.07 0.82 6.98 -51.93 -0.36 0.46 16 34 H 0.07 0.77 6.54 -51.93 -0.34 0.43 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.52 7.48 -51.93 -0.39 0.13 16 37 H 0.38 2.24 9.12 45.56 0.42 2.65 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.03 0.54 7.65 -51.93 -0.40 0.14 16 40 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 41 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -33.23 330.16 -7.67 -40.91 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.79 Total: 6.75 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -1.28 Total: -18.32 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.40 Total: -37.78 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.96 Total: -14.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.22 Total: 17.46 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.23 -7.67 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473893850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.466 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds