Wall clock time and date at job start Mon Mar 30 2020 01:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00433 * 2 1 4 4 H 1.48498 * 109.47189 * 274.94117 * 3 2 1 5 5 H 1.48501 * 109.46871 * 154.93842 * 3 2 1 6 6 H 1.48505 * 109.46957 * 34.94099 * 3 2 1 7 7 C 1.37883 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99650 * 354.44763 * 7 2 1 9 9 C 1.50697 * 119.99871 * 174.43999 * 7 2 1 10 10 C 1.52996 * 115.55484 * 296.25358 * 9 7 2 11 11 N 1.46905 * 109.46787 * 300.64203 * 10 9 7 12 12 C 1.48552 * 111.00258 * 280.07039 * 11 10 9 13 13 C 1.54380 * 104.59558 * 200.96195 * 12 11 10 14 14 H 1.08996 * 110.32244 * 264.95443 * 13 12 11 15 15 C 1.53006 * 110.40694 * 142.79135 * 13 12 11 16 16 O 1.42897 * 109.46905 * 69.31546 * 15 13 12 17 17 C 1.54258 * 105.06082 * 23.85246 * 13 12 11 18 18 H 1.08994 * 110.32729 * 241.10323 * 17 13 12 19 19 C 1.53004 * 110.32484 * 118.89365 * 17 13 12 20 20 C 1.52993 * 109.47117 * 177.90913 * 19 17 13 21 21 O 1.42902 * 109.47143 * 180.02562 * 20 19 17 22 22 C 1.48561 * 110.99602 * 164.65223 * 11 10 9 23 23 C 1.53007 * 117.49534 * 150.58181 * 9 7 2 24 24 C 1.52998 * 117.49407 * 81.92596 * 9 7 2 25 25 H 0.96998 * 119.99486 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.46939 * 60.64293 * 10 9 7 27 27 H 1.08997 * 109.47529 * 180.64403 * 10 9 7 28 28 H 1.08999 * 110.40998 * 319.74160 * 12 11 10 29 29 H 1.09000 * 110.41367 * 82.18400 * 12 11 10 30 30 H 1.09007 * 109.46381 * 189.31038 * 15 13 12 31 31 H 1.08992 * 109.47130 * 309.31158 * 15 13 12 32 32 H 0.96707 * 114.00044 * 179.97438 * 16 15 13 33 33 H 1.09002 * 109.47533 * 297.91404 * 19 17 13 34 34 H 1.09006 * 109.46823 * 57.91256 * 19 17 13 35 35 H 1.09006 * 109.47457 * 300.00134 * 20 19 17 36 36 H 1.08995 * 109.47258 * 60.00035 * 20 19 17 37 37 H 0.96705 * 114.00109 * 180.02562 * 21 20 19 38 38 H 1.09006 * 110.41147 * 277.82031 * 22 11 10 39 39 H 1.08994 * 110.41638 * 40.26307 * 22 11 10 40 40 H 1.09001 * 117.49721 * 359.97438 * 23 9 7 41 41 H 1.08998 * 117.50008 * 145.02331 * 23 9 7 42 42 H 1.09005 * 117.49603 * 214.97316 * 24 9 7 43 43 H 1.09006 * 117.50214 * 359.97147 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.3924 2.1066 -1.3948 5 1 3.5951 1.4120 0.5931 6 1 1.5029 2.6202 0.8019 7 6 2.0045 -1.1941 0.0005 8 1 1.4683 -2.1271 0.0914 9 6 3.5062 -1.1973 -0.1259 10 6 4.0588 -0.6494 -1.4432 11 7 3.5357 -1.4447 -2.5621 12 6 4.2928 -2.7139 -2.7129 13 6 4.0271 -3.1548 -4.1684 14 1 3.1964 -3.8595 -4.2047 15 6 5.2838 -3.7842 -4.7730 16 8 5.5380 -5.0408 -4.1419 17 6 3.6628 -1.8578 -4.9199 18 1 2.6533 -1.9259 -5.3252 19 6 4.6699 -1.5924 -6.0408 20 6 4.2613 -0.3318 -6.8055 21 8 5.2015 -0.0842 -7.8527 22 6 3.7391 -0.7424 -3.8553 23 6 4.2684 -2.3470 0.5361 24 6 4.3224 -0.9427 1.1429 25 1 -0.4849 0.8401 -0.0004 26 1 3.7521 0.3898 -1.5615 27 1 5.1471 -0.7082 -1.4332 28 1 5.3577 -2.5421 -2.5562 29 1 3.9210 -3.4637 -2.0147 30 1 5.1347 -3.9381 -5.8419 31 1 6.1339 -3.1204 -4.6165 32 1 6.3218 -5.4978 -4.4766 33 1 5.6621 -1.4517 -5.6120 34 1 4.6862 -2.4421 -6.7233 35 1 3.2690 -0.4725 -7.2343 36 1 4.2449 0.5179 -6.1230 37 1 5.0048 0.7021 -8.3802 38 1 2.9503 -0.0078 -4.0172 39 1 4.7173 -0.2622 -3.8774 40 1 3.6837 -3.1008 1.0634 41 1 5.1637 -2.7128 0.0334 42 1 5.2533 -0.3852 1.0390 43 1 3.7732 -0.7725 2.0690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473893850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:08 Heat of formation + Delta-G solvation = -96.992143 kcal Electronic energy + Delta-G solvation = -21949.092292 eV Core-core repulsion = 18800.871239 eV Total energy + Delta-G solvation = -3148.221053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.88117 -38.73450 -37.74069 -37.12482 -34.41254 -34.12635 -31.69699 -29.06038 -27.96773 -26.99893 -25.07182 -23.73158 -23.10251 -22.10610 -20.80788 -20.00094 -18.49817 -18.27050 -17.98786 -17.14223 -16.80282 -16.29132 -16.07664 -15.81156 -15.42340 -14.96117 -14.83805 -14.69417 -14.40825 -14.02015 -13.72951 -13.40949 -13.03491 -12.90442 -12.86244 -12.66791 -12.41935 -12.27334 -12.05868 -11.88905 -11.77111 -11.60478 -11.33805 -11.28961 -10.95089 -10.88804 -10.63590 -10.50214 -10.22668 -9.14198 -8.18426 -6.18226 1.32524 1.39455 1.52044 2.43052 2.91667 3.15716 3.21541 3.35386 3.50432 3.57176 3.83246 4.05652 4.12857 4.18913 4.23561 4.30663 4.35180 4.43611 4.49124 4.52231 4.53458 4.55031 4.60327 4.67158 4.72975 4.83972 4.88808 4.89826 4.94081 5.08648 5.12718 5.19536 5.24243 5.38334 5.39301 5.50687 5.78481 6.11363 6.29070 6.44429 6.83795 6.88102 6.97524 7.45469 8.98762 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.006358 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.327327 B = 4403.076079 C = 5354.813407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.275 1.275 5 H -0.226 1.226 6 H -0.300 1.300 7 C -0.449 4.449 8 H 0.020 0.980 9 C -0.016 4.016 10 C 0.091 3.909 11 N -0.514 5.514 12 C 0.057 3.943 13 C -0.086 4.086 14 H 0.071 0.929 15 C 0.089 3.911 16 O -0.594 6.594 17 C -0.070 4.070 18 H 0.084 0.916 19 C -0.108 4.108 20 C 0.073 3.927 21 O -0.592 6.592 22 C 0.032 3.968 23 C -0.168 4.168 24 C -0.188 4.188 25 H 0.261 0.739 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.396 0.604 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.397 0.603 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.754 -1.703 -14.743 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.175 4.175 3 Si 0.756 3.244 4 H -0.201 1.201 5 H -0.148 1.148 6 H -0.228 1.228 7 C -0.487 4.487 8 H 0.038 0.962 9 C -0.017 4.017 10 C -0.037 4.037 11 N -0.237 5.237 12 C -0.070 4.070 13 C -0.106 4.106 14 H 0.090 0.910 15 C 0.012 3.988 16 O -0.402 6.402 17 C -0.089 4.089 18 H 0.103 0.897 19 C -0.145 4.145 20 C -0.005 4.005 21 O -0.401 6.401 22 C -0.096 4.096 23 C -0.205 4.205 24 C -0.226 4.226 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.246 0.754 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.246 0.754 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.778 -2.056 -14.040 19.778 hybrid contribution 0.440 1.276 -0.173 1.361 sum 14.218 -0.780 -14.213 20.119 Atomic orbital electron populations 1.70075 1.08307 1.27444 1.53855 1.25645 0.95026 1.02459 0.94345 0.86033 0.81133 0.79134 0.78142 1.20142 1.14848 1.22783 1.20220 0.89303 0.92072 1.47064 0.96153 1.19285 0.92197 1.00392 0.89842 1.21800 0.94916 0.95813 0.91173 1.65182 1.52372 1.04265 1.01880 1.22982 0.95283 0.92167 0.96606 1.21854 0.98301 0.96416 0.93988 0.91014 1.22394 0.95753 0.84636 0.96063 1.86486 1.52175 1.34905 1.66631 1.21704 1.00244 0.92818 0.94133 0.89734 1.21641 0.98712 0.98060 0.96119 1.22217 0.91846 0.97402 0.89027 1.86387 1.53551 1.52030 1.48108 1.23279 0.99919 0.96873 0.89540 1.22764 1.01671 0.91251 1.04843 1.23102 1.01689 0.99272 0.98524 0.93062 0.93317 0.94322 0.93829 0.92459 0.91160 0.92736 0.75435 0.91039 0.89592 0.92689 0.93604 0.75375 0.91578 0.93162 0.91139 0.88724 0.88716 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.45 13.96 21.45 0.30 -61.15 16 2 C 0.02 1.25 5.47 84.66 0.46 1.71 16 3 Si 0.93 44.91 24.84 68.60 1.70 46.61 16 4 H -0.28 -12.82 7.07 99.48 0.70 -12.11 16 5 H -0.23 -9.79 5.81 99.48 0.58 -9.22 16 6 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 7 C -0.45 -26.20 9.19 25.60 0.24 -25.97 16 8 H 0.02 1.36 8.06 -2.91 -0.02 1.33 16 9 C -0.02 -0.74 0.89 -52.93 -0.05 -0.79 16 10 C 0.09 3.76 4.35 86.30 0.38 4.13 16 11 N -0.51 -20.29 5.10 -881.52 -4.49 -24.78 16 12 C 0.06 1.96 5.24 86.45 0.45 2.41 16 13 C -0.09 -2.38 3.32 -9.90 -0.03 -2.42 16 14 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 15 C 0.09 1.84 5.19 71.98 0.37 2.21 16 16 O -0.59 -13.14 13.55 -148.98 -2.02 -15.16 16 17 C -0.07 -1.76 3.09 -9.90 -0.03 -1.79 16 18 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 19 C -0.11 -2.09 3.78 30.59 0.12 -1.98 16 20 C 0.07 1.33 6.89 71.98 0.50 1.83 16 21 O -0.59 -10.58 13.66 -148.98 -2.04 -12.61 16 22 C 0.03 0.99 5.08 86.45 0.44 1.43 16 23 C -0.17 -6.84 9.15 30.62 0.28 -6.56 16 24 C -0.19 -7.69 8.23 30.62 0.25 -7.44 16 25 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 26 H 0.05 2.10 4.74 -2.39 -0.01 2.09 16 27 H 0.04 1.39 7.61 -2.39 -0.02 1.37 16 28 H 0.04 1.37 7.29 -2.39 -0.02 1.35 16 29 H 0.06 2.25 7.80 -2.39 -0.02 2.23 16 30 H 0.07 1.17 6.43 -2.38 -0.02 1.15 16 31 H 0.05 1.03 6.99 -2.39 -0.02 1.02 16 32 H 0.40 4.62 9.12 -74.05 -0.68 3.94 16 33 H 0.07 1.40 6.98 -2.39 -0.02 1.39 16 34 H 0.09 1.49 6.54 -2.38 -0.02 1.47 16 35 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.05 0.86 7.48 -2.39 -0.02 0.85 16 37 H 0.40 3.58 9.12 -74.05 -0.68 2.91 16 38 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.05 1.42 7.65 -2.39 -0.02 1.40 16 40 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.09 3.33 8.07 -2.39 -0.02 3.31 16 42 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 43 H 0.07 3.24 8.14 -2.38 -0.02 3.22 16 Total: -1.00 -74.15 330.16 -3.65 -77.79 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.48 Total: 22.50 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 3.37 Total: -33.21 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -4.19 Total: -85.93 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -4.05 Total: -27.77 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.70 Total: 46.61 kcal Total: -74.15 -3.65 -77.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473893850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.198 kcal (2) G-P(sol) polarization free energy of solvation -74.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds