Wall clock time and date at job start Mon Mar 30 2020 01:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99960 * 2 1 4 4 H 1.48504 * 109.46985 * 269.99600 * 3 2 1 5 5 H 1.48502 * 109.47121 * 29.99696 * 3 2 1 6 6 H 1.48504 * 109.47079 * 149.99734 * 3 2 1 7 7 C 1.37872 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00758 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47345 * 300.00238 * 9 7 2 11 11 O 1.42903 * 109.46442 * 60.00168 * 9 7 2 12 12 C 1.53001 * 109.47316 * 179.97438 * 9 7 2 13 13 N 1.46898 * 109.46893 * 180.02562 * 12 9 7 14 14 C 1.46900 * 110.99589 * 180.02562 * 13 12 9 15 15 H 1.09000 * 109.54519 * 34.99954 * 14 13 12 16 16 C 1.53254 * 109.54263 * 274.82090 * 14 13 12 17 17 C 1.53109 * 109.10866 * 183.85674 * 16 14 13 18 18 O 1.42898 * 109.57841 * 57.81691 * 17 16 14 19 19 C 1.42986 * 114.05346 * 298.57057 * 18 17 16 20 20 C 1.52712 * 109.43246 * 60.48311 * 19 18 17 21 21 C 1.53963 * 109.82672 * 64.39854 * 20 19 18 22 22 C 1.54960 * 104.11094 * 95.99953 * 21 20 19 23 23 C 1.54917 * 102.78970 * 37.67539 * 22 21 20 24 24 C 1.53546 * 110.07855 * 181.87477 * 20 19 18 25 25 H 0.96998 * 119.99752 * 0.02562 * 1 2 3 26 26 H 0.96700 * 114.00311 * 60.00230 * 11 9 7 27 27 H 1.08999 * 109.47164 * 300.00418 * 12 9 7 28 28 H 1.08997 * 109.47124 * 60.00119 * 12 9 7 29 29 H 1.00893 * 111.00468 * 56.04908 * 13 12 9 30 30 H 1.09001 * 109.52761 * 303.66261 * 16 14 13 31 31 H 1.08997 * 109.52737 * 63.87257 * 16 14 13 32 32 H 1.08993 * 109.39041 * 297.80439 * 17 16 14 33 33 H 1.08999 * 109.45584 * 177.86503 * 17 16 14 34 34 H 1.09000 * 109.47534 * 300.49546 * 19 18 17 35 35 H 1.09001 * 109.47506 * 180.47361 * 19 18 17 36 36 H 1.08994 * 110.50500 * 214.65739 * 21 20 19 37 37 H 1.09002 * 110.49603 * 337.34641 * 21 20 19 38 38 H 1.09007 * 110.75103 * 279.35152 * 22 21 20 39 39 H 1.08997 * 110.75224 * 156.00460 * 22 21 20 40 40 H 1.09004 * 110.48457 * 203.55431 * 23 22 21 41 41 H 1.08996 * 110.48227 * 80.91683 * 23 22 21 42 42 H 1.08998 * 110.05648 * 359.92636 * 24 20 19 43 43 H 1.09004 * 110.05518 * 121.41580 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6247 -2.5563 0.8919 11 8 0.4291 -2.5755 -1.1648 12 6 2.2453 -3.6621 0.0015 13 7 1.5107 -4.9342 0.0020 14 6 2.4352 -6.0759 0.0024 15 1 3.3186 -5.8295 0.5914 16 6 2.8521 -6.3984 -1.4367 17 6 3.7376 -7.6474 -1.4340 18 8 3.0276 -8.7365 -0.8409 19 6 2.6548 -8.5160 0.5218 20 6 1.7412 -7.2954 0.6075 21 6 0.4266 -7.5732 -0.1442 22 6 -0.5515 -8.0379 0.9643 23 6 -0.1672 -7.1335 2.1619 24 6 1.3693 -7.0170 2.0710 25 1 -0.4850 0.8401 -0.0004 26 1 0.9209 -2.5307 -1.9962 27 1 2.8713 -3.6047 -0.8890 28 1 2.8726 -3.6040 0.8909 29 1 0.8740 -4.9845 -0.7791 30 1 1.9637 -6.5843 -2.0404 31 1 3.4070 -5.5574 -1.8524 32 1 4.6425 -7.4482 -0.8601 33 1 4.0064 -7.9041 -2.4586 34 1 3.5495 -8.3431 1.1199 35 1 2.1279 -9.3918 0.9007 36 1 0.0596 -6.6642 -0.6205 37 1 0.5688 -8.3619 -0.8830 38 1 -0.3900 -9.0884 1.2064 39 1 -1.5851 -7.8641 0.6651 40 1 -0.4594 -7.6010 3.1023 41 1 -0.6307 -6.1519 2.0627 42 1 1.8392 -7.7536 2.7227 43 1 1.6854 -6.0125 2.3525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473894256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:42 Heat of formation + Delta-G solvation = -114.473656 kcal Electronic energy + Delta-G solvation = -22185.156313 eV Core-core repulsion = 19036.177204 eV Total energy + Delta-G solvation = -3148.979108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.43056 -36.89872 -36.42317 -34.48526 -32.12301 -31.00225 -30.36995 -28.53567 -27.77354 -24.95886 -24.62500 -22.87463 -21.84044 -20.66131 -20.13000 -18.41772 -16.96773 -16.28198 -16.02056 -15.63683 -15.18330 -14.81513 -14.57785 -14.25201 -14.15545 -13.75320 -13.30699 -13.03240 -12.96509 -12.39049 -12.25769 -12.12216 -11.42161 -11.29346 -11.17273 -11.05076 -10.89934 -10.83995 -10.80516 -10.78046 -10.54912 -10.35001 -10.24380 -10.12512 -9.98507 -9.43049 -9.01314 -8.58462 -8.17235 -7.71439 -6.01087 -4.19521 3.26392 3.33740 3.36160 3.86426 4.34644 4.55079 4.68793 4.78534 4.90194 4.99601 5.12564 5.24805 5.26154 5.32334 5.43651 5.48827 5.62193 5.65323 5.72696 5.73643 5.88101 5.91852 5.95228 6.05415 6.13720 6.14726 6.21354 6.27234 6.31610 6.39389 6.44141 6.50352 6.62910 6.67943 6.88381 7.18065 7.57106 7.75745 7.86616 8.00879 8.23073 8.84081 9.37235 9.57712 11.03083 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026165 B = 0.004808 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.872424 B = 5822.691827 C = 6353.302134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.573 4.573 8 H 0.054 0.946 9 C 0.233 3.767 10 H 0.063 0.937 11 O -0.565 6.565 12 C 0.037 3.963 13 N -0.672 5.672 14 C 0.097 3.903 15 H 0.070 0.930 16 C -0.186 4.186 17 C 0.066 3.934 18 O -0.383 6.383 19 C 0.073 3.927 20 C -0.082 4.082 21 C -0.106 4.106 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.102 4.102 25 H 0.260 0.740 26 H 0.340 0.660 27 H 0.015 0.985 28 H 0.062 0.938 29 H 0.344 0.656 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.278 -16.406 0.244 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.612 4.612 8 H 0.072 0.928 9 C 0.175 3.825 10 H 0.081 0.919 11 O -0.367 6.367 12 C -0.092 4.092 13 N -0.303 5.303 14 C -0.013 4.013 15 H 0.089 0.911 16 C -0.226 4.226 17 C -0.012 4.012 18 O -0.301 6.301 19 C -0.004 4.004 20 C -0.083 4.083 21 C -0.144 4.144 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.139 4.139 25 H 0.070 0.930 26 H 0.183 0.817 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.164 0.836 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.486 -16.486 1.311 16.901 hybrid contribution 1.493 1.422 -1.157 2.365 sum 4.979 -15.064 0.153 15.866 Atomic orbital electron populations 1.70082 1.05904 1.26385 1.46966 1.25025 0.94674 0.99070 0.93849 0.86688 0.79980 0.83619 0.78155 1.20593 1.21082 1.19880 1.21631 0.93080 0.91636 1.54828 0.92821 1.19408 0.88102 0.88857 0.86116 0.91942 1.86594 1.38521 1.96246 1.15291 1.22856 0.97318 0.90129 0.98917 1.60546 1.18551 1.00894 1.50338 1.21528 0.94861 0.91430 0.93530 0.91143 1.22986 1.01299 0.98482 0.99803 1.22476 0.93555 0.86849 0.98276 1.87911 1.75713 1.40069 1.26449 1.22675 0.96995 0.97892 0.82824 1.21545 0.96136 0.94134 0.96500 1.22317 0.93648 1.01162 0.97274 1.22476 0.98987 0.98588 0.95982 1.22291 0.95799 1.00285 0.97122 1.21961 0.96083 1.01918 0.93972 0.93005 0.81714 0.96676 0.91976 0.83596 0.90834 0.91051 0.93534 0.89340 0.93571 0.89034 0.90798 0.91847 0.92419 0.92009 0.92749 0.90774 0.93080 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.34 12.84 55.43 0.71 -24.63 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.57 -15.60 8.76 -34.44 -0.30 -15.90 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.23 5.78 3.10 -27.88 -0.09 5.70 16 10 H 0.06 1.76 8.14 -51.93 -0.42 1.34 16 11 O -0.56 -14.09 12.06 -35.23 -0.43 -14.52 16 12 C 0.04 0.73 5.13 -3.82 -0.02 0.71 16 13 N -0.67 -11.33 5.28 -106.69 -0.56 -11.90 16 14 C 0.10 1.36 1.49 -67.68 -0.10 1.26 16 15 H 0.07 1.03 7.80 -51.93 -0.41 0.63 16 16 C -0.19 -2.37 5.18 -26.54 -0.14 -2.51 16 17 C 0.07 0.75 6.82 37.21 0.25 1.01 16 18 O -0.38 -4.84 10.15 -35.23 -0.36 -5.20 16 19 C 0.07 0.84 5.23 37.01 0.19 1.03 16 20 C -0.08 -1.03 0.47 -153.97 -0.07 -1.10 16 21 C -0.11 -1.36 4.75 -25.19 -0.12 -1.48 16 22 C -0.12 -1.45 6.91 -24.69 -0.17 -1.62 16 23 C -0.12 -1.48 6.84 -25.01 -0.17 -1.65 16 24 C -0.10 -1.29 5.88 -25.74 -0.15 -1.44 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.34 7.56 9.04 45.56 0.41 7.98 16 27 H 0.01 0.29 7.53 -51.93 -0.39 -0.10 16 28 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16 29 H 0.34 6.02 6.36 -39.30 -0.25 5.77 16 30 H 0.07 0.97 7.42 -51.93 -0.39 0.59 16 31 H 0.07 0.94 7.58 -51.93 -0.39 0.54 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.06 6.05 -51.93 -0.31 0.75 16 37 H 0.06 0.81 7.38 -51.93 -0.38 0.43 16 38 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 43 H 0.08 1.14 7.46 -51.93 -0.39 0.75 16 LS Contribution 328.80 15.07 4.95 4.95 Total: -1.00 -29.13 328.80 -8.34 -37.47 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -6.66 Total: 11.61 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -0.98 Total: -13.85 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.15 Total: -36.53 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.78 Total: -19.72 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.13 -8.34 -37.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473894256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.008 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds