Wall clock time and date at job start Mon Mar 30 2020 01:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99737 * 2 1 4 4 H 1.48494 * 109.46916 * 270.00131 * 3 2 1 5 5 H 1.48498 * 109.46984 * 30.00104 * 3 2 1 6 6 H 1.48498 * 109.46794 * 149.99890 * 3 2 1 7 7 C 1.37869 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99882 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00433 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47296 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47002 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47002 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47064 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99787 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99961 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00256 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47359 * 180.02562 * 16 15 13 18 18 H 1.08998 * 109.47226 * 304.99800 * 17 16 15 19 19 O 1.42900 * 109.47323 * 65.00025 * 17 16 15 20 20 C 1.53003 * 109.46913 * 184.99785 * 17 16 15 21 21 C 1.53786 * 113.61503 * 80.86227 * 20 17 16 22 22 C 1.54049 * 86.98426 * 140.01654 * 21 20 17 23 23 C 1.53781 * 113.61337 * 178.47021 * 20 17 16 24 24 H 0.97004 * 120.00240 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46608 * 59.99729 * 9 7 2 26 26 H 1.09001 * 109.46560 * 300.00097 * 9 7 2 27 27 H 1.08997 * 109.47067 * 59.99825 * 10 9 7 28 28 H 1.09000 * 109.46926 * 299.99935 * 10 9 7 29 29 H 1.08997 * 109.47497 * 59.99911 * 11 10 9 30 30 H 1.09009 * 109.47156 * 299.99775 * 11 10 9 31 31 H 1.09001 * 109.47700 * 59.99992 * 12 11 10 32 32 H 1.08999 * 109.47649 * 299.99578 * 12 11 10 33 33 H 0.96997 * 120.00251 * 0.02562 * 15 13 12 34 34 H 1.09005 * 109.47098 * 59.99932 * 16 15 13 35 35 H 1.09007 * 109.47021 * 300.00734 * 16 15 13 36 36 H 0.96698 * 114.00069 * 60.00040 * 19 17 16 37 37 H 1.09002 * 112.85017 * 309.66610 * 20 17 16 38 38 H 1.08992 * 113.61675 * 254.61398 * 21 20 17 39 39 H 1.09000 * 113.60973 * 25.51686 * 21 20 17 40 40 H 1.09005 * 113.62125 * 220.02158 * 22 21 20 41 41 H 1.08996 * 113.68970 * 89.12734 * 22 21 20 42 42 H 1.08999 * 113.61567 * 334.48261 * 23 20 17 43 43 H 1.08998 * 113.61196 * 105.38615 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 6 2.4746 -6.1499 -0.0005 13 6 1.7211 -7.4551 -0.0005 14 8 0.5082 -7.4550 -0.0015 15 7 2.3949 -8.6222 -0.0005 16 6 1.6625 -9.8910 -0.0011 17 6 2.6568 -11.0539 -0.0003 18 1 3.3415 -10.9470 -0.8416 19 8 3.3982 -11.0460 1.2213 20 6 1.8960 -12.3754 -0.1266 21 6 1.4893 -12.7166 -1.5699 22 6 1.8621 -14.1753 -1.2437 23 6 2.8107 -13.6107 -0.1731 24 1 -0.4851 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.8720 -3.6042 0.8894 28 1 2.8719 -3.6042 -0.8905 29 1 0.8540 -5.0446 -0.8913 30 1 0.8533 -5.0451 0.8887 31 1 3.1006 -6.0923 0.8899 32 1 3.1019 -6.0922 -0.8901 33 1 3.3649 -8.6222 -0.0002 34 1 1.0362 -9.9486 -0.8914 35 1 1.0354 -9.9489 0.8886 36 1 2.8516 -11.1374 2.0137 37 1 1.0791 -12.4636 0.5897 38 1 0.4281 -12.5701 -1.7708 39 1 2.1308 -12.2602 -2.3237 40 1 2.3768 -14.6869 -2.0571 41 1 1.0368 -14.7568 -0.8330 42 1 3.8127 -13.3983 -0.5457 43 1 2.8154 -14.1855 0.7530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557032660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:04 Heat of formation + Delta-G solvation = -105.569179 kcal Electronic energy + Delta-G solvation = -19811.218567 eV Core-core repulsion = 16662.625585 eV Total energy + Delta-G solvation = -3148.592981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.17331 -39.29536 -36.85086 -34.93692 -34.34328 -32.59525 -30.46751 -29.29582 -26.28874 -25.96523 -24.84562 -22.50637 -22.02408 -20.36161 -19.93879 -19.87837 -17.41677 -16.88484 -16.43376 -16.13847 -15.84818 -15.37026 -15.26372 -14.79686 -14.41485 -14.01720 -13.73027 -13.37279 -12.90281 -12.83814 -12.59074 -12.38210 -12.03794 -11.81028 -11.65585 -11.57102 -11.37860 -10.96158 -10.95936 -10.71719 -10.50867 -10.48034 -10.37746 -10.24241 -9.73948 -9.58161 -9.18770 -9.16433 -8.95226 -8.28247 -5.93010 -3.95434 2.75947 3.08135 3.35611 3.41479 3.44887 3.79853 4.08392 4.18787 4.32279 4.39915 4.50840 4.59495 4.73929 4.84812 4.98708 5.21469 5.28006 5.30619 5.36417 5.40563 5.42476 5.45723 5.48555 5.53726 5.59181 5.78574 5.91090 6.00646 6.17788 6.31392 6.34970 6.58544 6.87671 7.05591 7.17475 7.23322 7.47347 7.76723 7.92992 8.08628 8.29740 8.50489 9.12311 9.68041 11.18294 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.061204 B = 0.002257 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.380241 B =12404.021004 C =12613.637282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.511 3.489 14 O -0.538 6.538 15 N -0.734 5.734 16 C 0.088 3.912 17 C 0.107 3.893 18 H 0.104 0.896 19 O -0.557 6.557 20 C -0.144 4.144 21 C -0.135 4.135 22 C -0.145 4.145 23 C -0.125 4.125 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.403 0.597 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.377 0.623 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.652 -29.211 -0.626 29.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.178 4.178 13 C 0.298 3.702 14 O -0.414 6.414 15 N -0.388 5.388 16 C -0.037 4.037 17 C 0.047 3.953 18 H 0.122 0.878 19 O -0.362 6.362 20 C -0.163 4.163 21 C -0.173 4.173 22 C -0.182 4.182 23 C -0.162 4.162 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.237 0.763 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.224 0.776 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.105 -29.020 -1.033 29.673 hybrid contribution 0.326 0.847 0.338 0.969 sum 6.431 -28.173 -0.695 28.906 Atomic orbital electron populations 1.69980 1.06036 1.26472 1.51002 1.25051 0.94856 0.99240 0.95509 0.86603 0.79816 0.83591 0.78026 1.20727 1.21272 1.19928 1.21288 0.92988 0.91205 1.50296 0.92751 1.19101 0.94079 0.91289 0.97308 1.21650 0.99072 0.94009 1.00078 1.21447 0.97019 0.92734 1.02901 1.21790 1.00074 0.91972 1.04007 1.21132 0.88427 0.85645 0.74956 1.90703 1.14293 1.87737 1.48686 1.46005 1.10458 1.05299 1.77038 1.22011 0.95103 0.83540 1.03003 1.22215 0.92978 0.91942 0.88152 0.87772 1.86584 1.37766 1.96186 1.15649 1.23234 0.99383 0.94781 0.98926 1.22946 1.01933 0.96615 0.95761 1.22890 0.99716 0.96394 0.99239 1.22791 0.98133 0.95980 0.99323 0.93070 0.96595 0.96589 0.93462 0.93485 0.91848 0.91857 0.89122 0.89167 0.76263 0.90723 0.91453 0.77554 0.88701 0.91051 0.89790 0.91347 0.90176 0.89828 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.29 55.43 0.74 -27.05 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.14 -1.90 5.70 -27.88 -0.16 -2.06 16 13 C 0.51 7.29 7.83 -10.98 -0.09 7.20 16 14 O -0.54 -9.99 15.98 5.55 0.09 -9.90 16 15 N -0.73 -7.54 5.50 -60.29 -0.33 -7.87 16 16 C 0.09 0.78 5.30 -4.04 -0.02 0.76 16 17 C 0.11 0.69 2.75 -26.73 -0.07 0.61 16 18 H 0.10 0.67 7.98 -51.93 -0.41 0.26 16 19 O -0.56 -3.93 13.11 -35.23 -0.46 -4.39 16 20 C -0.14 -0.80 3.31 -89.80 -0.30 -1.10 16 21 C -0.14 -0.75 7.59 -25.77 -0.20 -0.95 16 22 C -0.14 -0.74 8.09 -25.78 -0.21 -0.95 16 23 C -0.12 -0.68 7.47 -25.92 -0.19 -0.87 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.10 -51.92 -0.42 0.82 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.40 3.28 8.47 -40.82 -0.35 2.93 16 34 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 35 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.38 1.71 9.05 45.56 0.41 2.12 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.45 7.99 -51.93 -0.41 0.04 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -34.53 355.60 -8.73 -43.26 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.06 Total: -1.10 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.04 Total: -15.41 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.40 Total: -34.92 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.37 Total: -14.29 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.53 -8.73 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557032660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.307 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds