Wall clock time and date at job start Mon Mar 30 2020 01:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99737 * 2 1 4 4 H 1.48494 * 109.46916 * 270.00131 * 3 2 1 5 5 H 1.48498 * 109.46984 * 30.00104 * 3 2 1 6 6 H 1.48498 * 109.46794 * 149.99890 * 3 2 1 7 7 C 1.37869 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99882 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00433 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47296 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47002 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47002 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47064 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99787 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99961 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00256 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47359 * 180.02562 * 16 15 13 18 18 H 1.08998 * 109.47226 * 304.99800 * 17 16 15 19 19 O 1.42900 * 109.47323 * 65.00025 * 17 16 15 20 20 C 1.53003 * 109.46913 * 184.99785 * 17 16 15 21 21 C 1.53786 * 113.61503 * 80.86227 * 20 17 16 22 22 C 1.54049 * 86.98426 * 140.01654 * 21 20 17 23 23 C 1.53781 * 113.61337 * 178.47021 * 20 17 16 24 24 H 0.97004 * 120.00240 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46608 * 59.99729 * 9 7 2 26 26 H 1.09001 * 109.46560 * 300.00097 * 9 7 2 27 27 H 1.08997 * 109.47067 * 59.99825 * 10 9 7 28 28 H 1.09000 * 109.46926 * 299.99935 * 10 9 7 29 29 H 1.08997 * 109.47497 * 59.99911 * 11 10 9 30 30 H 1.09009 * 109.47156 * 299.99775 * 11 10 9 31 31 H 1.09001 * 109.47700 * 59.99992 * 12 11 10 32 32 H 1.08999 * 109.47649 * 299.99578 * 12 11 10 33 33 H 0.96997 * 120.00251 * 0.02562 * 15 13 12 34 34 H 1.09005 * 109.47098 * 59.99932 * 16 15 13 35 35 H 1.09007 * 109.47021 * 300.00734 * 16 15 13 36 36 H 0.96698 * 114.00069 * 60.00040 * 19 17 16 37 37 H 1.09002 * 112.85017 * 309.66610 * 20 17 16 38 38 H 1.08992 * 113.61675 * 254.61398 * 21 20 17 39 39 H 1.09000 * 113.60973 * 25.51686 * 21 20 17 40 40 H 1.09005 * 113.62125 * 220.02158 * 22 21 20 41 41 H 1.08996 * 113.68970 * 89.12734 * 22 21 20 42 42 H 1.08999 * 113.61567 * 334.48261 * 23 20 17 43 43 H 1.08998 * 113.61196 * 105.38615 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 6 2.4746 -6.1499 -0.0005 13 6 1.7211 -7.4551 -0.0005 14 8 0.5082 -7.4550 -0.0015 15 7 2.3949 -8.6222 -0.0005 16 6 1.6625 -9.8910 -0.0011 17 6 2.6568 -11.0539 -0.0003 18 1 3.3415 -10.9470 -0.8416 19 8 3.3982 -11.0460 1.2213 20 6 1.8960 -12.3754 -0.1266 21 6 1.4893 -12.7166 -1.5699 22 6 1.8621 -14.1753 -1.2437 23 6 2.8107 -13.6107 -0.1731 24 1 -0.4851 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.8720 -3.6042 0.8894 28 1 2.8719 -3.6042 -0.8905 29 1 0.8540 -5.0446 -0.8913 30 1 0.8533 -5.0451 0.8887 31 1 3.1006 -6.0923 0.8899 32 1 3.1019 -6.0922 -0.8901 33 1 3.3649 -8.6222 -0.0002 34 1 1.0362 -9.9486 -0.8914 35 1 1.0354 -9.9489 0.8886 36 1 2.8516 -11.1374 2.0137 37 1 1.0791 -12.4636 0.5897 38 1 0.4281 -12.5701 -1.7708 39 1 2.1308 -12.2602 -2.3237 40 1 2.3768 -14.6869 -2.0571 41 1 1.0368 -14.7568 -0.8330 42 1 3.8127 -13.3983 -0.5457 43 1 2.8154 -14.1855 0.7530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557032660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:04 Heat of formation + Delta-G solvation = -130.121300 kcal Electronic energy + Delta-G solvation = -19812.283227 eV Core-core repulsion = 16662.625585 eV Total energy + Delta-G solvation = -3149.657641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.98347 -40.09631 -37.44803 -36.63325 -35.30366 -34.60234 -31.79500 -30.45141 -27.66345 -26.51327 -25.93406 -23.97539 -22.82802 -21.80413 -21.25920 -20.43396 -18.42772 -18.14982 -17.74562 -17.17225 -16.82142 -16.51838 -16.21998 -16.01484 -15.49734 -15.25560 -14.70388 -14.52578 -14.00568 -13.98026 -13.58042 -13.35183 -13.31363 -13.27118 -12.82813 -12.80573 -12.33942 -12.29179 -12.15604 -12.12618 -11.91233 -11.38142 -11.37692 -11.35789 -11.18114 -11.15546 -10.95336 -10.54863 -10.51464 -10.12239 -8.18474 -6.30707 1.40416 1.42894 1.53992 1.64974 2.18179 2.42269 3.13999 3.30186 3.56956 3.71408 3.83878 3.87816 3.96089 4.06439 4.12414 4.14945 4.18547 4.37267 4.62165 4.67906 4.71550 4.77113 4.85080 4.86654 4.88429 4.89150 5.03311 5.09364 5.12975 5.19578 5.33424 5.34571 5.35541 5.45302 5.57561 5.58781 5.78291 5.88235 6.25542 6.54654 6.76356 6.87674 7.27415 7.38795 8.93732 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.061204 B = 0.002257 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.380241 B =12404.021004 C =12613.637282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.096 4.096 12 C -0.129 4.129 13 C 0.509 3.491 14 O -0.590 6.590 15 N -0.715 5.715 16 C 0.087 3.913 17 C 0.121 3.879 18 H 0.109 0.891 19 O -0.566 6.566 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.122 4.122 24 H 0.263 0.737 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.417 0.583 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.388 0.612 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.236 -29.870 -0.594 31.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.134 4.134 11 C -0.134 4.134 12 C -0.168 4.168 13 C 0.298 3.702 14 O -0.471 6.471 15 N -0.368 5.368 16 C -0.037 4.037 17 C 0.061 3.939 18 H 0.127 0.873 19 O -0.373 6.373 20 C -0.160 4.160 21 C -0.177 4.177 22 C -0.181 4.181 23 C -0.160 4.160 24 H 0.071 0.929 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.254 0.746 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.237 0.763 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.743 -29.723 -0.995 30.999 hybrid contribution -0.518 1.000 0.337 1.176 sum 8.225 -28.723 -0.658 29.885 Atomic orbital electron populations 1.70137 1.08054 1.27741 1.51889 1.26115 0.95824 1.03796 0.94820 0.85363 0.78648 0.77992 0.78522 1.19695 1.20927 1.18327 1.21754 0.93751 0.92213 1.50206 0.91570 1.19065 0.94710 0.93823 0.94322 1.21452 0.97824 0.92753 1.01325 1.21242 0.97489 0.93664 1.00991 1.21671 0.98940 0.89595 1.06630 1.21200 0.87737 0.86806 0.74496 1.90693 1.16466 1.88446 1.51481 1.45842 1.11176 1.04754 1.74988 1.22125 0.95647 0.83617 1.02329 1.22091 0.92351 0.91146 0.88280 0.87318 1.86561 1.38357 1.96129 1.16234 1.23215 0.99468 0.94332 0.99034 1.22987 1.01765 0.97099 0.95811 1.22895 0.99770 0.96136 0.99277 1.22771 0.97968 0.95741 0.99512 0.92860 0.99698 0.99709 0.92088 0.92050 0.93870 0.93920 0.86488 0.86396 0.74580 0.91571 0.92083 0.76294 0.88426 0.91467 0.89596 0.90983 0.89853 0.90007 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.50 13.29 21.44 0.28 -59.21 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 3 Si 0.97 45.17 29.54 68.60 2.03 47.19 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.54 -31.73 9.11 25.60 0.23 -31.49 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.02 1.00 4.97 29.85 0.15 1.15 16 10 C -0.10 -3.99 5.15 30.59 0.16 -3.83 16 11 C -0.10 -3.53 4.50 30.59 0.14 -3.39 16 12 C -0.13 -3.26 5.70 29.85 0.17 -3.09 16 13 C 0.51 14.01 7.83 87.66 0.69 14.69 16 14 O -0.59 -22.28 15.98 -3.04 -0.05 -22.33 16 15 N -0.71 -13.37 5.50 -463.04 -2.55 -15.91 16 16 C 0.09 1.44 5.30 86.38 0.46 1.90 16 17 C 0.12 1.34 2.75 30.59 0.08 1.43 16 18 H 0.11 1.15 7.98 -2.39 -0.02 1.14 16 19 O -0.57 -6.73 13.11 -148.98 -1.95 -8.69 16 20 C -0.14 -1.37 3.31 -10.26 -0.03 -1.40 16 21 C -0.14 -1.39 7.59 31.21 0.24 -1.15 16 22 C -0.14 -1.27 8.09 31.21 0.25 -1.01 16 23 C -0.12 -1.12 7.47 31.12 0.23 -0.89 16 24 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 25 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 26 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 30 H 0.04 1.72 8.10 -2.38 -0.02 1.70 16 31 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.42 5.56 8.47 -92.71 -0.79 4.78 16 34 H 0.07 1.25 8.09 -2.38 -0.02 1.23 16 35 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.39 2.75 9.05 -74.06 -0.67 2.08 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.82 7.99 -2.39 -0.02 0.80 16 40 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.08 0.80 8.10 -2.39 -0.02 0.78 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -76.24 355.60 0.51 -75.73 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -0.48 Total: 10.36 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 3.22 Total: -27.14 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -2.26 Total: -75.13 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -2.00 Total: -31.02 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -76.24 0.51 -75.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557032660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.394 kcal (2) G-P(sol) polarization free energy of solvation -76.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds