Wall clock time and date at job start Mon Mar 30 2020 01:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00109 * 2 1 4 4 H 1.48500 * 109.47080 * 270.00652 * 3 2 1 5 5 H 1.48498 * 109.46531 * 30.00440 * 3 2 1 6 6 H 1.48493 * 109.47183 * 150.00242 * 3 2 1 7 7 C 1.37880 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99878 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00343 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47462 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47023 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00151 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99657 * 180.02562 * 11 10 9 14 14 C 1.47601 * 118.64422 * 359.97438 * 13 11 10 15 15 C 1.53951 * 112.14343 * 137.86785 * 14 13 11 16 16 C 1.50877 * 110.09638 * 319.43566 * 15 14 13 17 17 C 1.52571 * 109.36199 * 91.88238 * 16 15 14 18 18 H 1.08995 * 108.51292 * 36.08547 * 17 16 15 19 19 C 1.52998 * 108.50989 * 153.73783 * 17 16 15 20 20 C 1.52999 * 109.46788 * 187.31115 * 19 17 16 21 21 O 1.42903 * 109.47256 * 180.02562 * 20 19 17 22 22 C 1.47098 * 114.20661 * 274.91159 * 17 16 15 23 23 C 1.44571 * 118.64045 * 180.02562 * 13 11 10 24 24 H 0.96996 * 120.00449 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47282 * 60.00053 * 9 7 2 26 26 H 1.09001 * 109.47653 * 300.00613 * 9 7 2 27 27 H 1.08998 * 109.46783 * 60.00207 * 10 9 7 28 28 H 1.09005 * 109.46972 * 299.99991 * 10 9 7 29 29 H 1.09002 * 108.94870 * 17.18041 * 14 13 11 30 30 H 1.08999 * 108.94362 * 258.55600 * 14 13 11 31 31 H 1.08998 * 109.36618 * 199.23874 * 15 14 13 32 32 H 1.09002 * 109.36616 * 79.62732 * 15 14 13 33 33 H 1.08999 * 109.48732 * 331.91707 * 16 15 14 34 34 H 1.08998 * 109.50487 * 211.86194 * 16 15 14 35 35 H 1.08997 * 109.47384 * 67.30958 * 19 17 16 36 36 H 1.08997 * 109.47329 * 307.30701 * 19 17 16 37 37 H 1.08997 * 109.47286 * 59.99783 * 20 19 17 38 38 H 1.09008 * 109.47201 * 299.99563 * 20 19 17 39 39 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 40 40 H 1.08994 * 109.32472 * 183.14267 * 22 17 16 41 41 H 1.09001 * 109.32479 * 302.61848 * 22 17 16 42 42 H 1.09001 * 109.45171 * 30.77584 * 23 13 11 43 43 H 1.09007 * 109.44966 * 150.69094 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6525 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0011 13 7 2.1658 -6.1344 -0.0008 14 6 3.6414 -6.0994 -0.0003 15 6 4.2462 -7.1427 0.9567 16 6 3.4454 -7.2004 2.2341 17 6 2.3633 -8.2682 2.1049 18 1 2.7640 -9.0984 1.5234 19 6 2.0164 -8.7800 3.5044 20 6 1.0687 -9.9756 3.3897 21 8 0.7442 -10.4533 4.6968 22 6 1.1274 -7.7995 1.4594 23 6 1.4135 -7.3690 -0.0020 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6247 -2.5572 0.8896 27 1 2.8720 -3.6043 0.8895 28 1 2.8721 -3.6043 -0.8906 29 1 3.9718 -5.1063 0.3042 30 1 4.0003 -6.2957 -1.0106 31 1 5.2754 -6.8678 1.1874 32 1 4.2344 -8.1220 0.4781 33 1 2.9803 -6.2315 2.4157 34 1 4.1043 -7.4491 3.0659 35 1 1.5320 -7.9855 4.0721 36 1 2.9288 -9.0873 4.0154 37 1 1.5531 -10.7700 2.8220 38 1 0.1562 -9.6683 2.8787 39 1 0.1457 -11.2129 4.7007 40 1 0.3930 -8.6049 1.4587 41 1 0.7287 -6.9516 2.0163 42 1 0.4711 -7.2193 -0.5289 43 1 1.9905 -8.1452 -0.5047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557070286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:03 Heat of formation + Delta-G solvation = -111.521288 kcal Electronic energy + Delta-G solvation = -21307.647118 eV Core-core repulsion = 18158.796034 eV Total energy + Delta-G solvation = -3148.851084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.21294 -38.21225 -36.81119 -34.61695 -33.53995 -32.63453 -31.13146 -29.71752 -26.93081 -25.82998 -24.63450 -22.93535 -21.56731 -20.83581 -20.22006 -18.17086 -17.66413 -16.94855 -16.16823 -15.77472 -15.70250 -15.23113 -14.70114 -14.42693 -14.23341 -13.93994 -13.61787 -13.27035 -13.16646 -12.55079 -12.47131 -12.15329 -11.95219 -11.77985 -11.58515 -11.29477 -11.09761 -10.95937 -10.91196 -10.65275 -10.59447 -10.57234 -10.47523 -10.10086 -9.92747 -9.57486 -9.13519 -8.93920 -8.35192 -8.28078 -5.94271 -3.98608 3.25171 3.34299 3.37076 3.40847 3.43537 3.91692 4.48029 4.49862 4.60657 4.81578 4.85293 4.96975 5.01518 5.10397 5.19898 5.26487 5.39947 5.40609 5.53159 5.54405 5.59485 5.64822 5.78764 5.81123 5.88460 5.95282 6.00680 6.09135 6.17130 6.19480 6.25477 6.27093 6.39506 6.88323 7.00656 7.35527 7.75430 7.76967 7.88910 8.09448 8.40923 8.80657 9.10073 9.64798 11.16700 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027037 B = 0.003725 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.369896 B = 7515.074256 C = 7724.977889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.507 3.493 12 O -0.533 6.533 13 N -0.618 5.618 14 C 0.107 3.893 15 C -0.130 4.130 16 C -0.112 4.112 17 C -0.077 4.077 18 H 0.065 0.935 19 C -0.119 4.119 20 C 0.072 3.928 21 O -0.577 6.577 22 C -0.136 4.136 23 C 0.120 3.880 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.022 0.978 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.043 0.957 38 H 0.050 0.950 39 H 0.377 0.623 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.728 -21.381 3.308 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.408 6.408 13 N -0.354 5.354 14 C -0.016 4.016 15 C -0.168 4.168 16 C -0.150 4.150 17 C -0.096 4.096 18 H 0.083 0.917 19 C -0.156 4.156 20 C -0.006 4.006 21 O -0.382 6.382 22 C -0.174 4.174 23 C -0.004 4.004 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.224 0.776 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.315 -20.774 3.471 22.296 hybrid contribution 0.156 0.367 -0.196 0.445 sum 7.471 -20.407 3.275 21.977 Atomic orbital electron populations 1.69997 1.06051 1.26546 1.50240 1.25026 0.94817 0.99203 0.95340 0.86599 0.79785 0.83569 0.78046 1.20692 1.21234 1.19887 1.21222 0.92891 0.91046 1.51311 0.92657 1.18897 0.93180 0.89419 0.98533 1.21894 1.00692 0.92264 1.02108 1.21598 0.88456 0.85823 0.74454 1.90655 1.14409 1.87343 1.48391 1.47881 1.06125 1.06056 1.75314 1.21964 0.79501 1.00978 0.99138 1.21747 0.99530 0.99488 0.96018 1.21120 0.96761 0.99801 0.97272 1.20036 0.96254 0.98129 0.95173 0.91683 1.21719 0.99294 0.96987 0.97636 1.22362 0.98268 0.96015 0.83933 1.86483 1.70095 1.52508 1.29156 1.21399 0.97126 1.01742 0.97167 1.21299 0.97090 0.86118 0.95925 0.92972 0.95904 0.95909 0.90353 0.90416 0.89293 0.92186 0.90633 0.91777 0.91082 0.91754 0.91126 0.91409 0.93905 0.93169 0.77598 0.91246 0.91100 0.90104 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.64 13.29 55.43 0.74 -26.91 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -15.03 9.11 -34.44 -0.31 -15.35 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.67 3.96 -27.88 -0.11 -2.78 16 11 C 0.51 9.93 7.61 -10.98 -0.08 9.84 16 12 O -0.53 -12.66 15.42 5.56 0.09 -12.57 16 13 N -0.62 -8.98 2.23 -172.45 -0.39 -9.37 16 14 C 0.11 1.20 5.95 -2.94 -0.02 1.18 16 15 C -0.13 -1.14 5.71 -27.30 -0.16 -1.30 16 16 C -0.11 -1.12 4.93 -28.02 -0.14 -1.26 16 17 C -0.08 -0.75 1.69 -93.67 -0.16 -0.90 16 18 H 0.06 0.55 7.35 -51.93 -0.38 0.17 16 19 C -0.12 -1.18 4.90 -26.73 -0.13 -1.31 16 20 C 0.07 0.64 6.71 37.16 0.25 0.88 16 21 O -0.58 -5.60 13.66 -35.23 -0.48 -6.08 16 22 C -0.14 -1.57 4.78 -28.51 -0.14 -1.71 16 23 C 0.12 1.51 5.40 -4.01 -0.02 1.49 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.08 1.48 7.41 -51.93 -0.38 1.10 16 28 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 29 H 0.09 1.04 5.82 -51.93 -0.30 0.73 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.50 7.32 -51.93 -0.38 0.12 16 33 H 0.07 0.89 7.48 -51.93 -0.39 0.50 16 34 H 0.06 0.58 7.68 -51.93 -0.40 0.18 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 37 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.05 0.43 6.32 -51.92 -0.33 0.10 16 39 H 0.38 1.88 9.12 45.56 0.42 2.30 16 40 H 0.07 0.70 6.05 -51.93 -0.31 0.38 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.19 7.30 -51.93 -0.38 0.81 16 43 H 0.07 0.68 8.06 -51.92 -0.42 0.26 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -34.94 334.72 -7.84 -42.78 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.58 Total: -0.93 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -1.23 Total: -8.72 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.35 Total: -36.27 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.40 Total: -18.66 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.94 -7.84 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557070286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.739 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds