Wall clock time and date at job start Mon Mar 30 2020 01:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00109 * 2 1 4 4 H 1.48500 * 109.47080 * 270.00652 * 3 2 1 5 5 H 1.48498 * 109.46531 * 30.00440 * 3 2 1 6 6 H 1.48493 * 109.47183 * 150.00242 * 3 2 1 7 7 C 1.37880 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99878 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00343 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47462 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47023 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00151 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99657 * 180.02562 * 11 10 9 14 14 C 1.47601 * 118.64422 * 359.97438 * 13 11 10 15 15 C 1.53951 * 112.14343 * 137.86785 * 14 13 11 16 16 C 1.50877 * 110.09638 * 319.43566 * 15 14 13 17 17 C 1.52571 * 109.36199 * 91.88238 * 16 15 14 18 18 H 1.08995 * 108.51292 * 36.08547 * 17 16 15 19 19 C 1.52998 * 108.50989 * 153.73783 * 17 16 15 20 20 C 1.52999 * 109.46788 * 187.31115 * 19 17 16 21 21 O 1.42903 * 109.47256 * 180.02562 * 20 19 17 22 22 C 1.47098 * 114.20661 * 274.91159 * 17 16 15 23 23 C 1.44571 * 118.64045 * 180.02562 * 13 11 10 24 24 H 0.96996 * 120.00449 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47282 * 60.00053 * 9 7 2 26 26 H 1.09001 * 109.47653 * 300.00613 * 9 7 2 27 27 H 1.08998 * 109.46783 * 60.00207 * 10 9 7 28 28 H 1.09005 * 109.46972 * 299.99991 * 10 9 7 29 29 H 1.09002 * 108.94870 * 17.18041 * 14 13 11 30 30 H 1.08999 * 108.94362 * 258.55600 * 14 13 11 31 31 H 1.08998 * 109.36618 * 199.23874 * 15 14 13 32 32 H 1.09002 * 109.36616 * 79.62732 * 15 14 13 33 33 H 1.08999 * 109.48732 * 331.91707 * 16 15 14 34 34 H 1.08998 * 109.50487 * 211.86194 * 16 15 14 35 35 H 1.08997 * 109.47384 * 67.30958 * 19 17 16 36 36 H 1.08997 * 109.47329 * 307.30701 * 19 17 16 37 37 H 1.08997 * 109.47286 * 59.99783 * 20 19 17 38 38 H 1.09008 * 109.47201 * 299.99563 * 20 19 17 39 39 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 40 40 H 1.08994 * 109.32472 * 183.14267 * 22 17 16 41 41 H 1.09001 * 109.32479 * 302.61848 * 22 17 16 42 42 H 1.09001 * 109.45171 * 30.77584 * 23 13 11 43 43 H 1.09007 * 109.44966 * 150.69094 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6525 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0011 13 7 2.1658 -6.1344 -0.0008 14 6 3.6414 -6.0994 -0.0003 15 6 4.2462 -7.1427 0.9567 16 6 3.4454 -7.2004 2.2341 17 6 2.3633 -8.2682 2.1049 18 1 2.7640 -9.0984 1.5234 19 6 2.0164 -8.7800 3.5044 20 6 1.0687 -9.9756 3.3897 21 8 0.7442 -10.4533 4.6968 22 6 1.1274 -7.7995 1.4594 23 6 1.4135 -7.3690 -0.0020 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6247 -2.5572 0.8896 27 1 2.8720 -3.6043 0.8895 28 1 2.8721 -3.6043 -0.8906 29 1 3.9718 -5.1063 0.3042 30 1 4.0003 -6.2957 -1.0106 31 1 5.2754 -6.8678 1.1874 32 1 4.2344 -8.1220 0.4781 33 1 2.9803 -6.2315 2.4157 34 1 4.1043 -7.4491 3.0659 35 1 1.5320 -7.9855 4.0721 36 1 2.9288 -9.0873 4.0154 37 1 1.5531 -10.7700 2.8220 38 1 0.1562 -9.6683 2.8787 39 1 0.1457 -11.2129 4.7007 40 1 0.3930 -8.6049 1.4587 41 1 0.7287 -6.9516 2.0163 42 1 0.4711 -7.2193 -0.5289 43 1 1.9905 -8.1452 -0.5047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557070286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:02 Heat of formation + Delta-G solvation = -136.397551 kcal Electronic energy + Delta-G solvation = -21308.725834 eV Core-core repulsion = 18158.796034 eV Total energy + Delta-G solvation = -3149.929800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.43221 -39.33439 -37.68054 -35.71879 -35.60323 -33.67002 -32.96799 -30.81074 -28.19506 -27.35462 -25.74568 -24.24628 -22.90294 -22.07141 -21.07028 -19.52016 -18.81379 -18.33959 -17.59948 -17.20140 -16.87543 -16.46547 -16.13137 -15.57723 -15.44164 -15.07351 -14.62038 -14.47270 -14.22287 -14.08781 -13.95087 -13.46528 -13.29994 -13.01735 -12.81545 -12.65049 -12.54860 -12.40402 -12.08401 -11.99063 -11.87355 -11.52988 -11.48363 -11.37787 -11.31140 -11.25599 -10.81151 -10.59017 -10.57469 -9.54101 -8.18563 -6.33087 1.41343 1.44556 1.55474 1.71325 2.15432 2.43057 3.14177 3.28338 3.65114 3.73836 3.88492 4.05804 4.07442 4.19656 4.26487 4.36451 4.42617 4.48944 4.50407 4.53864 4.57912 4.71621 4.74070 4.81842 4.92993 4.96305 5.04711 5.11292 5.15191 5.18935 5.29752 5.35086 5.39389 5.47225 5.53565 5.61036 5.81740 5.86820 6.16749 6.41004 6.85402 6.89163 7.32343 7.37572 8.94275 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027037 B = 0.003725 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.369896 B = 7515.074256 C = 7724.977889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.044 3.956 10 C -0.117 4.117 11 C 0.502 3.498 12 O -0.590 6.590 13 N -0.602 5.602 14 C 0.095 3.905 15 C -0.120 4.120 16 C -0.114 4.114 17 C -0.072 4.072 18 H 0.095 0.905 19 C -0.117 4.117 20 C 0.071 3.929 21 O -0.600 6.600 22 C -0.127 4.127 23 C 0.115 3.885 24 H 0.263 0.737 25 H -0.020 1.020 26 H -0.022 1.022 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.396 0.604 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.054 0.946 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.228 -22.979 2.921 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.007 3.993 10 C -0.156 4.156 11 C 0.292 3.708 12 O -0.471 6.471 13 N -0.335 5.335 14 C -0.026 4.026 15 C -0.158 4.158 16 C -0.152 4.152 17 C -0.090 4.090 18 H 0.113 0.887 19 C -0.155 4.155 20 C -0.006 4.006 21 O -0.409 6.409 22 C -0.166 4.166 23 C -0.008 4.008 24 H 0.071 0.929 25 H -0.001 1.001 26 H -0.004 1.004 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.246 0.754 40 H 0.104 0.896 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.874 -22.435 3.086 25.121 hybrid contribution -0.963 0.780 -0.048 1.240 sum 9.912 -21.655 3.038 24.008 Atomic orbital electron populations 1.70185 1.08382 1.27819 1.51457 1.26169 0.95734 1.04036 0.94585 0.85300 0.78673 0.77567 0.78584 1.19584 1.21202 1.17801 1.21707 0.93977 0.91560 1.50823 0.90571 1.18673 0.93653 0.92622 0.94391 1.21643 0.99245 0.90615 1.04122 1.21402 0.87677 0.87145 0.74560 1.90631 1.16689 1.88203 1.51544 1.47860 1.07841 1.05004 1.72767 1.22334 0.76812 1.01991 1.01445 1.21737 0.99942 0.99716 0.94414 1.21150 0.97107 0.98116 0.98833 1.20000 0.95112 0.98787 0.95119 0.88680 1.21689 0.99637 0.96700 0.97479 1.22386 0.98128 0.96217 0.83898 1.86432 1.70886 1.53764 1.29792 1.21331 0.98682 1.00607 0.95963 1.21510 0.96561 0.86019 0.96758 0.92858 1.00129 1.00382 0.88365 0.88051 0.89868 0.89734 0.88407 0.89466 0.94512 0.90393 0.93979 0.90780 0.91502 0.93405 0.75398 0.89592 0.95430 0.92731 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.63 13.29 21.45 0.28 -60.35 16 2 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 3 Si 0.98 44.82 29.54 68.60 2.03 46.84 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.25 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.54 -31.52 9.11 25.60 0.23 -31.28 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.55 4.26 29.85 0.13 2.67 16 10 C -0.12 -4.90 3.96 29.85 0.12 -4.78 16 11 C 0.50 20.44 7.61 87.66 0.67 21.10 16 12 O -0.59 -30.21 15.42 -3.02 -0.05 -30.25 16 13 N -0.60 -17.01 2.23 -817.89 -1.83 -18.84 16 14 C 0.10 1.84 5.95 86.49 0.51 2.35 16 15 C -0.12 -1.60 5.71 30.23 0.17 -1.43 16 16 C -0.11 -2.04 4.93 29.76 0.15 -1.89 16 17 C -0.07 -1.22 1.69 -12.77 -0.02 -1.24 16 18 H 0.10 1.13 7.35 -2.39 -0.02 1.12 16 19 C -0.12 -2.17 4.90 30.59 0.15 -2.02 16 20 C 0.07 1.12 6.71 71.98 0.48 1.61 16 21 O -0.60 -10.84 13.66 -148.98 -2.04 -12.87 16 22 C -0.13 -2.89 4.78 29.44 0.14 -2.75 16 23 C 0.11 2.77 5.40 87.42 0.47 3.25 16 24 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 25 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 26 H -0.02 -1.46 8.10 -2.39 -0.02 -1.48 16 27 H 0.10 3.70 7.41 -2.39 -0.02 3.68 16 28 H 0.10 3.74 8.03 -2.38 -0.02 3.72 16 29 H 0.08 1.72 5.82 -2.39 -0.01 1.71 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 0.84 7.32 -2.39 -0.02 0.82 16 33 H 0.04 0.91 7.48 -2.39 -0.02 0.89 16 34 H 0.08 1.19 7.68 -2.39 -0.02 1.17 16 35 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.28 7.89 -2.39 -0.02 1.26 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 0.76 6.32 -2.38 -0.02 0.75 16 39 H 0.40 3.34 9.12 -74.06 -0.68 2.66 16 40 H 0.09 1.65 6.05 -2.39 -0.01 1.63 16 41 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 1.64 7.30 -2.39 -0.02 1.62 16 43 H 0.11 1.77 8.06 -2.38 -0.02 1.75 16 Total: -1.00 -82.05 334.72 2.38 -79.67 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.31 Total: 10.22 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 3.67 Total: -14.42 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -1.54 Total: -79.19 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -2.08 Total: -43.13 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -82.05 2.38 -79.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557070286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.724 kcal (2) G-P(sol) polarization free energy of solvation -82.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds