Wall clock time and date at job start Mon Mar 30 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00113 * 2 1 4 4 H 1.48505 * 109.47241 * 239.99852 * 3 2 1 5 5 H 1.48497 * 109.47144 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47085 * 120.00117 * 3 2 1 7 7 C 1.37878 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00279 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47156 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47049 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99883 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99874 * 179.97438 * 11 10 9 14 14 C 1.47601 * 118.64432 * 359.97438 * 13 11 10 15 15 C 1.53943 * 112.14529 * 222.15713 * 14 13 11 16 16 C 1.50872 * 110.09376 * 40.56228 * 15 14 13 17 17 C 1.52585 * 109.19758 * 268.09472 * 16 15 14 18 18 H 1.08997 * 108.66404 * 323.91781 * 17 16 15 19 19 C 1.53002 * 108.37386 * 206.42016 * 17 16 15 20 20 C 1.53000 * 109.47175 * 170.33195 * 19 17 16 21 21 O 1.42891 * 109.47207 * 180.02562 * 20 19 17 22 22 C 1.47097 * 114.31848 * 85.27354 * 17 16 15 23 23 C 1.44583 * 118.64152 * 179.97438 * 13 11 10 24 24 H 0.96991 * 119.99799 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46646 * 60.00831 * 9 7 2 26 26 H 1.08992 * 109.47504 * 300.00314 * 9 7 2 27 27 H 1.08998 * 109.47148 * 60.00516 * 10 9 7 28 28 H 1.09001 * 109.47214 * 300.00264 * 10 9 7 29 29 H 1.08997 * 108.94828 * 342.84726 * 14 13 11 30 30 H 1.09006 * 108.94708 * 101.55782 * 14 13 11 31 31 H 1.09001 * 109.36511 * 160.75473 * 15 14 13 32 32 H 1.09005 * 109.36735 * 280.49365 * 15 14 13 33 33 H 1.08998 * 109.49228 * 28.07710 * 16 15 14 34 34 H 1.09007 * 109.49483 * 148.12203 * 16 15 14 35 35 H 1.09003 * 109.47139 * 290.33376 * 19 17 16 36 36 H 1.08993 * 109.47269 * 50.33283 * 19 17 16 37 37 H 1.09003 * 109.47235 * 300.00122 * 20 19 17 38 38 H 1.09001 * 109.46800 * 59.99632 * 20 19 17 39 39 H 0.96700 * 113.99967 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.32967 * 176.74829 * 22 17 16 41 41 H 1.08996 * 109.32582 * 57.09972 * 22 17 16 42 42 H 1.09004 * 109.44981 * 329.21730 * 23 13 11 43 43 H 1.09001 * 109.44696 * 209.30225 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1657 -6.1344 -0.0018 14 6 3.6413 -6.0994 -0.0024 15 6 4.2460 -7.1421 -0.9600 16 6 3.4450 -7.1990 -2.2372 17 6 2.3645 -8.2683 -2.1047 18 1 2.7651 -9.0988 -1.5234 19 6 2.0207 -8.7825 -3.5041 20 6 1.1223 -10.0155 -3.3878 21 8 0.8016 -10.4961 -4.6947 22 6 1.1267 -7.8021 -1.4612 23 6 1.4133 -7.3690 -0.0018 24 1 -0.4849 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6044 0.8895 28 1 2.8720 -3.6044 -0.8905 29 1 3.9716 -5.1062 -0.3063 30 1 4.0004 -6.2978 1.0075 31 1 5.2752 -6.8670 -1.1907 32 1 4.2322 -8.1221 -0.4828 33 1 2.9798 -6.2301 -2.4182 34 1 4.1041 -7.4470 -3.0693 35 1 1.4983 -8.0034 -4.0593 36 1 2.9380 -9.0496 -4.0286 37 1 1.6446 -10.7947 -2.8326 38 1 0.2049 -9.7484 -2.8632 39 1 0.2329 -11.2783 -4.6976 40 1 0.3942 -8.6094 -1.4606 41 1 0.7281 -6.9539 -2.0177 42 1 0.4706 -7.2196 0.5246 43 1 1.9900 -8.1455 0.5007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557070287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:04 Heat of formation + Delta-G solvation = -136.554403 kcal Electronic energy + Delta-G solvation = -21303.659747 eV Core-core repulsion = 18153.723145 eV Total energy + Delta-G solvation = -3149.936601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.43387 -39.33313 -37.68243 -35.71809 -35.60245 -33.67319 -32.96675 -30.82335 -28.19162 -27.34928 -25.75498 -24.22872 -22.88750 -22.07547 -21.08984 -19.52068 -18.81298 -18.33084 -17.59774 -17.20225 -16.87231 -16.46933 -16.14085 -15.57439 -15.44285 -15.07057 -14.61145 -14.48184 -14.22074 -14.08680 -13.94865 -13.46396 -13.30765 -13.02564 -12.78217 -12.63120 -12.56563 -12.42019 -12.08002 -11.98849 -11.87064 -11.53087 -11.48540 -11.38871 -11.32132 -11.25820 -10.81243 -10.59093 -10.56732 -9.54299 -8.18401 -6.33073 1.41275 1.46258 1.53973 1.71267 2.15313 2.43168 3.14204 3.28395 3.65138 3.73919 3.88574 4.05721 4.07523 4.19642 4.26846 4.36182 4.42793 4.48898 4.50482 4.54000 4.58122 4.71571 4.73932 4.81632 4.92975 4.96132 5.05073 5.11249 5.15333 5.18917 5.29649 5.35118 5.39213 5.47023 5.53457 5.61086 5.81679 5.86759 6.16713 6.40964 6.85237 6.89380 7.32299 7.37576 8.94250 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027278 B = 0.003712 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.219688 B = 7542.191663 C = 7741.436698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.045 3.955 10 C -0.117 4.117 11 C 0.502 3.498 12 O -0.590 6.590 13 N -0.602 5.602 14 C 0.095 3.905 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.072 4.072 18 H 0.095 0.905 19 C -0.118 4.118 20 C 0.071 3.929 21 O -0.600 6.600 22 C -0.127 4.127 23 C 0.114 3.886 24 H 0.263 0.737 25 H -0.022 1.022 26 H -0.020 1.020 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.396 0.604 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.054 0.946 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.303 -23.014 -2.915 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.007 3.993 10 C -0.156 4.156 11 C 0.292 3.708 12 O -0.471 6.471 13 N -0.335 5.335 14 C -0.026 4.026 15 C -0.158 4.158 16 C -0.152 4.152 17 C -0.090 4.090 18 H 0.113 0.887 19 C -0.156 4.156 20 C -0.006 4.006 21 O -0.409 6.409 22 C -0.165 4.165 23 C -0.009 4.009 24 H 0.072 0.928 25 H -0.004 1.004 26 H -0.001 1.001 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.246 0.754 40 H 0.104 0.896 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.923 -22.453 -3.077 25.158 hybrid contribution -0.934 0.756 0.034 1.202 sum 9.990 -21.697 -3.043 24.079 Atomic orbital electron populations 1.70179 1.08388 1.27892 1.51384 1.26169 0.95731 1.04034 0.94557 0.85356 0.78051 0.77186 0.79547 1.18638 1.21327 1.18533 1.21684 0.93980 0.91579 1.50964 0.90565 1.18667 0.93647 0.92608 0.94381 1.21643 0.99246 0.90612 1.04123 1.21401 0.87679 0.87146 0.74559 1.90632 1.16690 1.88204 1.51546 1.47857 1.07843 1.04995 1.72760 1.22335 0.76803 1.01995 1.01451 1.21748 0.99955 0.99719 0.94419 1.21161 0.97105 0.98107 0.98841 1.20012 0.95128 0.98757 0.95132 0.88664 1.21708 0.99890 0.96453 0.97508 1.22375 0.98303 0.96013 0.83892 1.86431 1.73400 1.51278 1.29771 1.21308 0.98654 1.00584 0.95990 1.21484 0.96566 0.86023 0.96791 0.92848 1.00390 1.00137 0.88045 0.88365 0.89852 0.89728 0.88397 0.89464 0.94504 0.90369 0.94001 0.90824 0.91516 0.93376 0.75394 0.89576 0.95431 0.92746 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.68 13.29 21.45 0.28 -60.40 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.02 16 3 Si 0.98 44.80 29.54 68.60 2.03 46.83 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.57 4.26 29.85 0.13 2.70 16 10 C -0.12 -4.90 3.96 29.85 0.12 -4.78 16 11 C 0.50 20.45 7.62 87.66 0.67 21.12 16 12 O -0.59 -30.23 15.42 -3.03 -0.05 -30.28 16 13 N -0.60 -17.02 2.24 -818.11 -1.83 -18.85 16 14 C 0.10 1.84 5.95 86.49 0.51 2.35 16 15 C -0.12 -1.61 5.71 30.22 0.17 -1.44 16 16 C -0.11 -2.04 4.94 29.76 0.15 -1.89 16 17 C -0.07 -1.22 1.66 -12.77 -0.02 -1.25 16 18 H 0.10 1.13 7.32 -2.39 -0.02 1.12 16 19 C -0.12 -2.18 4.91 30.59 0.15 -2.03 16 20 C 0.07 1.12 6.75 71.98 0.49 1.61 16 21 O -0.60 -10.78 13.66 -148.98 -2.03 -12.82 16 22 C -0.13 -2.88 4.82 29.41 0.14 -2.74 16 23 C 0.11 2.77 5.38 87.39 0.47 3.24 16 24 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 25 H -0.02 -1.46 8.10 -2.39 -0.02 -1.48 16 26 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 27 H 0.10 3.75 8.03 -2.39 -0.02 3.73 16 28 H 0.10 3.70 7.41 -2.39 -0.02 3.68 16 29 H 0.08 1.72 5.82 -2.39 -0.01 1.71 16 30 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 0.84 7.30 -2.38 -0.02 0.82 16 33 H 0.04 0.91 7.48 -2.39 -0.02 0.90 16 34 H 0.08 1.19 7.64 -2.38 -0.02 1.18 16 35 H 0.04 1.00 8.13 -2.39 -0.02 0.98 16 36 H 0.07 1.28 7.82 -2.39 -0.02 1.26 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.05 0.75 6.38 -2.39 -0.02 0.74 16 39 H 0.40 3.29 9.12 -74.06 -0.68 2.61 16 40 H 0.09 1.65 6.13 -2.39 -0.01 1.64 16 41 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 1.63 7.30 -2.39 -0.02 1.62 16 43 H 0.11 1.77 8.06 -2.39 -0.02 1.75 16 Total: -1.00 -82.09 334.75 2.38 -79.71 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.31 Total: 10.28 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 3.67 Total: -14.48 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -1.55 Total: -79.24 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -2.08 Total: -43.09 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -82.09 2.38 -79.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557070287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.842 kcal (2) G-P(sol) polarization free energy of solvation -82.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds